RNA–Protein interactions for RNA: ENST00000475873.2

USP4-209, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 536 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-209ENST00000475873 MUC17Q685J3 4493 aa3.08□□□□□ -1.92
USP4-209ENST00000475873 TRAV12-2A0A075B6T6 113 aa3.08□□□□□ -1.92
USP4-209ENST00000475873 A0A0J9YX75 114 aa3.08□□□□□ -1.92
USP4-209ENST00000475873 GAGE12BA1L429 117 aa3.08□□□□□ -1.92
USP4-209ENST00000475873 TSTD3H0UI37 97 aa3.08□□□□□ -1.92
USP4-209ENST00000475873 GAGE7O76087 117 aa3.08□□□□□ -1.92
USP4-209ENST00000475873 TMEM50AO95807 157 aa3.08□□□□□ -1.92
USP4-209ENST00000475873 HRASP01112 189 aa3.08□□□□□ -1.92
USP4-209ENST00000475873 CRYGDP07320 174 aa3.08□□□□□ -1.92
USP4-209ENST00000475873 GAGE12FP0CL80 117 aa3.08□□□□□ -1.92
USP4-209ENST00000475873 GAGE12GP0CL81 117 aa3.08□□□□□ -1.92
USP4-209ENST00000475873 GAGE12IP0CL82 117 aa3.08□□□□□ -1.92
USP4-209ENST00000475873 LIMS3P0CW19 117 aa3.08□□□□□ -1.92
USP4-209ENST00000475873 LIMS4P0CW20 117 aa3.08□□□□□ -1.92
USP4-209ENST00000475873 ANXA3P12429 323 aa3.08□□□□□ -1.92
USP4-209ENST00000475873 CCR6P51684 374 aa3.08□□□□□ -1.92
USP4-209ENST00000475873 RPL19P84098 196 aaKnown RBP3.08□□□□□ -1.92
USP4-209ENST00000475873 RAB31Q13636 194 aa3.08□□□□□ -1.92
USP4-209ENST00000475873 TRAM1Q15629 374 aa3.08□□□□□ -1.92
USP4-209ENST00000475873 VAMP3Q15836 100 aa3.08□□□□□ -1.92
USP4-209ENST00000475873 SPINK13Q1W4C9 94 aa3.08□□□□□ -1.92
USP4-209ENST00000475873 ACOT6Q3I5F7 207 aaPredicted RBP3.08□□□□□ -1.92
USP4-209ENST00000475873 HSD17B12Q53GQ0 312 aa3.08□□□□□ -1.92
USP4-209ENST00000475873 TMEM182Q6ZP80 229 aaPredicted RBP3.08□□□□□ -1.92
USP4-209ENST00000475873 DEFB107AQ8IZN7 70 aa3.08□□□□□ -1.92
USP4-209ENST00000475873 TSPAN14Q8NG11 270 aa3.08□□□□□ -1.92
USP4-209ENST00000475873 OR1P1Q8NH06 330 aa3.08□□□□□ -1.92
USP4-209ENST00000475873 LSM10Q969L4 123 aaKnown RBP3.08□□□□□ -1.92
USP4-209ENST00000475873 MOB3AQ96BX8 217 aa3.08□□□□□ -1.92
USP4-209ENST00000475873 PGLYRP3Q96LB9 341 aa3.08□□□□□ -1.92
USP4-209ENST00000475873 CMSS1Q9BQ75 279 aaKnown RBP3.08□□□□□ -1.92
USP4-209ENST00000475873 VPS25Q9BRG1 176 aa3.08□□□□□ -1.92
USP4-209ENST00000475873 TMEM208Q9BTX3 173 aa3.08□□□□□ -1.92
USP4-209ENST00000475873 PECRQ9BY49 303 aa3.08□□□□□ -1.92
USP4-209ENST00000475873 COMMD5Q9GZQ3 224 aa3.08□□□□□ -1.92
USP4-209ENST00000475873 BABAM2Q9NXR7 383 aa3.08□□□□□ -1.92
USP4-209ENST00000475873 TAS2R8Q9NYW2 309 aa3.08□□□□□ -1.92
USP4-209ENST00000475873 TIMM8BQ9Y5J9 83 aaPredicted RBP3.08□□□□□ -1.92
USP4-209ENST00000475873 TRAV9-2A0A087WT02 112 aa3.07□□□□□ -1.92
USP4-209ENST00000475873 TRBV7-9A0A0J9YWB2 115 aa3.07□□□□□ -1.92
USP4-209ENST00000475873 GNGT2O14610 69 aa3.07□□□□□ -1.92
USP4-209ENST00000475873 CTDSPLO15194 276 aa3.07□□□□□ -1.92
USP4-209ENST00000475873 CYB5BO43169 146 aa3.07□□□□□ -1.92
USP4-209ENST00000475873 TNFSF12O43508 249 aa3.07□□□□□ -1.92
USP4-209ENST00000475873 HLA-DQB1P01920 261 aa3.07□□□□□ -1.92
USP4-209ENST00000475873 TCRBP04435 133 aa3.07□□□□□ -1.92
USP4-209ENST00000475873 FGF2P09038 288 aa3.07□□□□□ -1.92
USP4-209ENST00000475873 NBEAP1P0C6P0 100 aa3.07□□□□□ -1.92
USP4-209ENST00000475873 SCGB1A1P11684 91 aa3.07□□□□□ -1.92
USP4-209ENST00000475873 ZNF25P17030 456 aaPredicted RBP3.07□□□□□ -1.92
USP4-209ENST00000475873 NFYAP23511 347 aaPredicted RBP3.07□□□□□ -1.92
USP4-209ENST00000475873 CAMPP49913 170 aa3.07□□□□□ -1.92
USP4-209ENST00000475873 SEC61GP60059 68 aa3.07□□□□□ -1.92
USP4-209ENST00000475873 RAB2AP61019 212 aa3.07□□□□□ -1.92
USP4-209ENST00000475873 NHLH2Q02577 135 aa3.07□□□□□ -1.92
USP4-209ENST00000475873 MLANAQ16655 118 aa3.07□□□□□ -1.92
USP4-209ENST00000475873 Q499Y3 187 aa3.07□□□□□ -1.92
USP4-209ENST00000475873 RNASE10Q5GAN6 216 aaKnown RBP3.07□□□□□ -1.92
USP4-209ENST00000475873 LPCAT3Q6P1A2 487 aa3.07□□□□□ -1.92
USP4-209ENST00000475873 KCNIP4Q6PIL6 250 aa3.07□□□□□ -1.92
USP4-209ENST00000475873 TMEM144Q7Z5S9 345 aa3.07□□□□□ -1.92
USP4-209ENST00000475873 CMTM1Q8IZ96 169 aa3.07□□□□□ -1.92
USP4-209ENST00000475873 OR4C5Q8NGB2 326 aa3.07□□□□□ -1.92
USP4-209ENST00000475873 OR11H7Q8NGC8 314 aa3.07□□□□□ -1.92
USP4-209ENST00000475873 OR1L8Q8NGR8 309 aa3.07□□□□□ -1.92
USP4-209ENST00000475873 OR10J6PQ8NGY7 276 aa3.07□□□□□ -1.92
USP4-209ENST00000475873 COQ8AQ8NI60 647 aa3.07□□□□□ -1.92
USP4-209ENST00000475873 IL22RA2Q969J5 263 aa3.07□□□□□ -1.92
USP4-209ENST00000475873 TMEM203Q969S6 136 aa3.07□□□□□ -1.92
USP4-209ENST00000475873 PINX1Q96BK5 328 aaKnown RBP3.07□□□□□ -1.92
USP4-209ENST00000475873 GPR146Q96CH1 333 aa3.07□□□□□ -1.92
USP4-209ENST00000475873 C14orf144Q96I85 54 aa3.07□□□□□ -1.92
USP4-209ENST00000475873 LINC00052Q96N35 136 aa3.07□□□□□ -1.92
USP4-209ENST00000475873 DERL3Q96Q80 235 aa3.07□□□□□ -1.92
USP4-209ENST00000475873 HSD17B10Q99714 261 aaKnown RBP3.07□□□□□ -1.92
USP4-209ENST00000475873 GGACTQ9BVM4 153 aa3.07□□□□□ -1.92
USP4-209ENST00000475873 Q9HAA7 133 aa3.07□□□□□ -1.92
USP4-209ENST00000475873 RSL24D1Q9UHA3 163 aaKnown RBP3.07□□□□□ -1.92
USP4-209ENST00000475873 A0A0U1RRA0 63 aa3.06□□□□□ -1.92
USP4-209ENST00000475873 GAGE10A6NGK3 116 aa3.06□□□□□ -1.92
USP4-209ENST00000475873 C5orf52A6NGY3 159 aa3.06□□□□□ -1.92
USP4-209ENST00000475873 IBA57-AS1B1ANH7 110 aa3.06□□□□□ -1.92
USP4-209ENST00000475873 M0QXV9 152 aa3.06□□□□□ -1.92
USP4-209ENST00000475873 M0R036 132 aa3.06□□□□□ -1.92
USP4-209ENST00000475873 RGS5O15539 181 aa3.06□□□□□ -1.92
USP4-209ENST00000475873 BUB3O43684 328 aa3.06□□□□□ -1.92
USP4-209ENST00000475873 SCO1O75880 301 aa3.06□□□□□ -1.92
USP4-209ENST00000475873 TNFAIP8O95379 198 aa3.06□□□□□ -1.92
USP4-209ENST00000475873 INSP01308 110 aa3.06□□□□□ -1.92
USP4-209ENST00000475873 HTN1P15515 57 aa3.06□□□□□ -1.92
USP4-209ENST00000475873 EVI2AP22794 236 aa3.06□□□□□ -1.92
USP4-209ENST00000475873 CLDN12P56749 244 aa3.06□□□□□ -1.92
USP4-209ENST00000475873 INSL4Q14641 139 aa3.06□□□□□ -1.92
USP4-209ENST00000475873 P2RY14Q15391 338 aa3.06□□□□□ -1.92
USP4-209ENST00000475873 MRPL23Q16540 153 aaKnown RBP3.06□□□□□ -1.92
USP4-209ENST00000475873 RNF151Q2KHN1 245 aa3.06□□□□□ -1.92
USP4-209ENST00000475873 TIGITQ495A1 244 aa3.06□□□□□ -1.92
USP4-209ENST00000475873 C1orf100Q5SVJ3 147 aa3.06□□□□□ -1.92
USP4-209ENST00000475873 IDNKQ5T6J7 187 aa3.06□□□□□ -1.92
USP4-209ENST00000475873 RPL22L1Q6P5R6 122 aaKnown RBP3.06□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms