RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 DSCR4P56555 118 aaPredicted RBP0.62□□□□□ -2.31
CCDC88A-212ENST00000474059 LCN6P62502 163 aa0.62□□□□□ -2.31
CCDC88A-212ENST00000474059 RPL19P84098 196 aaKnown RBP0.62□□□□□ -2.31
CCDC88A-212ENST00000474059 AKR1C8PQ5T2L2 129 aa0.62□□□□□ -2.31
CCDC88A-212ENST00000474059 EIF5AL1Q6IS14 154 aaKnown RBP0.62□□□□□ -2.31
CCDC88A-212ENST00000474059 POP5Q969H6 163 aaKnown RBP0.62□□□□□ -2.31
CCDC88A-212ENST00000474059 AMELYQ99218 206 aa0.62□□□□□ -2.31
CCDC88A-212ENST00000474059 PAIP2Q9BPZ3 127 aaKnown RBP0.62□□□□□ -2.31
CCDC88A-212ENST00000474059 GINS3Q9BRX5 216 aa0.62□□□□□ -2.31
CCDC88A-212ENST00000474059 OR2J1Q9GZK6 312 aa0.62□□□□□ -2.31
CCDC88A-212ENST00000474059 LYRM2Q9NU23 88 aaPredicted RBP0.62□□□□□ -2.31
CCDC88A-212ENST00000474059 ORMDL1Q9P0S3 153 aa0.62□□□□□ -2.31
CCDC88A-212ENST00000474059 TRPM1Q7Z4N2 1603 aa0.62□□□□□ -2.31
CCDC88A-212ENST00000474059 DOCK4Q8N1I0 1966 aa0.62□□□□□ -2.31
CCDC88A-212ENST00000474059 DIDO1Q9BTC0 2240 aaKnown RBP0.62□□□□□ -2.31
CCDC88A-212ENST00000474059 MYO5AQ9Y4I1 1855 aaKnown RBP0.62□□□□□ -2.31
CCDC88A-212ENST00000474059 UHRF1BP1Q6BDS2 1440 aa0.62□□□□□ -2.31
CCDC88A-212ENST00000474059 NCOA6Q14686 2063 aaPredicted RBP0.61□□□□□ -2.31
CCDC88A-212ENST00000474059 COL1A1P02452 1464 aaPredicted RBP0.61□□□□□ -2.31
CCDC88A-212ENST00000474059 NCAPD3P42695 1498 aa0.61□□□□□ -2.31
CCDC88A-212ENST00000474059 PHRF1Q9P1Y6 1649 aaKnown RBP0.61□□□□□ -2.31
CCDC88A-212ENST00000474059 IGHV1-58A0A0C4DH39 117 aa0.61□□□□□ -2.31
CCDC88A-212ENST00000474059 E7EUB6 86 aa0.61□□□□□ -2.31
CCDC88A-212ENST00000474059 IFNA1P01562 189 aa0.61□□□□□ -2.31
CCDC88A-212ENST00000474059 IGLV1-51P01701 117 aa0.61□□□□□ -2.31
CCDC88A-212ENST00000474059 ARPP19P56211 112 aa0.61□□□□□ -2.31
CCDC88A-212ENST00000474059 SNCBQ16143 134 aa0.61□□□□□ -2.31
CCDC88A-212ENST00000474059 C1orf134Q5TEV5 83 aa0.61□□□□□ -2.31
CCDC88A-212ENST00000474059 KRTAP26-1Q6PEX3 210 aa0.61□□□□□ -2.31
CCDC88A-212ENST00000474059 LINC00322Q6ZN03 302 aaPredicted RBP0.61□□□□□ -2.31
CCDC88A-212ENST00000474059 OR5D16Q8NGK9 328 aa0.61□□□□□ -2.31
CCDC88A-212ENST00000474059 OR13C6PQ8NH95 151 aa0.61□□□□□ -2.31
CCDC88A-212ENST00000474059 Q8TAT8 98 aa0.61□□□□□ -2.31
CCDC88A-212ENST00000474059 AP3S1Q92572 193 aa0.61□□□□□ -2.31
CCDC88A-212ENST00000474059 ZHX1-C8orf76Q96EF9 292 aa0.61□□□□□ -2.31
CCDC88A-212ENST00000474059 LYSMD1Q96S90 227 aa0.61□□□□□ -2.31
CCDC88A-212ENST00000474059 GPX7Q96SL4 187 aaPredicted RBP0.61□□□□□ -2.31
CCDC88A-212ENST00000474059 POPDC3Q9HBV1 291 aa0.61□□□□□ -2.31
CCDC88A-212ENST00000474059 SSR3Q9UNL2 185 aa0.61□□□□□ -2.31
CCDC88A-212ENST00000474059 MYLKQ15746 1914 aa0.61□□□□□ -2.31
CCDC88A-212ENST00000474059 SIP14410 1827 aa0.61□□□□□ -2.31
CCDC88A-212ENST00000474059 CASP8AP2Q9UKL3 1982 aa0.61□□□□□ -2.31
CCDC88A-212ENST00000474059 CECR2Q9BXF3 1484 aa0.61□□□□□ -2.31
CCDC88A-212ENST00000474059 RIIAD1A6NNX1 92 aa0.6□□□□□ -2.31
CCDC88A-212ENST00000474059 C17orf112F2Z3M2 114 aa0.6□□□□□ -2.31
CCDC88A-212ENST00000474059 K7ERJ3 54 aa0.6□□□□□ -2.31
CCDC88A-212ENST00000474059 M0R233 179 aa0.6□□□□□ -2.31
CCDC88A-212ENST00000474059 MFSD11O43934 449 aa0.6□□□□□ -2.31
CCDC88A-212ENST00000474059 NUPR1O60356 82 aa0.6□□□□□ -2.31
CCDC88A-212ENST00000474059 KLF7O75840 302 aaPredicted RBP0.6□□□□□ -2.31
CCDC88A-212ENST00000474059 ERC2-IT1O76042 136 aa0.6□□□□□ -2.31
CCDC88A-212ENST00000474059 TRGC2P03986 189 aa0.6□□□□□ -2.31
CCDC88A-212ENST00000474059 CXCL1P09341 107 aa0.6□□□□□ -2.31
CCDC88A-212ENST00000474059 OR10J4P0C629 311 aa0.6□□□□□ -2.31
CCDC88A-212ENST00000474059 GNG3P63215 75 aa0.6□□□□□ -2.31
CCDC88A-212ENST00000474059 CDK6Q00534 326 aa0.6□□□□□ -2.31
CCDC88A-212ENST00000474059 PSG9Q00887 426 aa0.6□□□□□ -2.31
CCDC88A-212ENST00000474059 SCGB2B2Q4G0G5 96 aa0.6□□□□□ -2.31
CCDC88A-212ENST00000474059 LYG2Q86SG7 212 aa0.6□□□□□ -2.31
CCDC88A-212ENST00000474059 IFT20Q8IY31 132 aa0.6□□□□□ -2.31
CCDC88A-212ENST00000474059 SMIM20Q8N5G0 67 aa0.6□□□□□ -2.31
CCDC88A-212ENST00000474059 RAB37Q96AX2 223 aa0.6□□□□□ -2.31
CCDC88A-212ENST00000474059 MUCL1Q96DR8 90 aa0.6□□□□□ -2.31
CCDC88A-212ENST00000474059 PBDC1Q9BVG4 233 aa0.6□□□□□ -2.31
CCDC88A-212ENST00000474059 GGACTQ9BVM4 153 aa0.6□□□□□ -2.31
CCDC88A-212ENST00000474059 SH3BGRL3Q9H299 93 aa0.6□□□□□ -2.31
CCDC88A-212ENST00000474059 TMEM14CQ9P0S9 112 aa0.6□□□□□ -2.31
CCDC88A-212ENST00000474059 CD109Q6YHK3 1445 aa0.6□□□□□ -2.31
CCDC88A-212ENST00000474059 CAMSAP2Q08AD1 1489 aa0.6□□□□□ -2.31
CCDC88A-212ENST00000474059 MGAMO43451 1857 aa0.59□□□□□ -2.31
CCDC88A-212ENST00000474059 COL24A1Q17RW2 1714 aa0.59□□□□□ -2.31
CCDC88A-212ENST00000474059 FRMPD1Q5SYB0 1578 aa0.59□□□□□ -2.31
CCDC88A-212ENST00000474059 A0A087WSZ3 146 aa0.59□□□□□ -2.31
CCDC88A-212ENST00000474059 ODAMA1E959 279 aa0.59□□□□□ -2.31
CCDC88A-212ENST00000474059 NCR3O14931 201 aa0.59□□□□□ -2.31
CCDC88A-212ENST00000474059 IFNA14P01570 189 aa0.59□□□□□ -2.31
CCDC88A-212ENST00000474059 APOA2P02652 100 aa0.59□□□□□ -2.31
CCDC88A-212ENST00000474059 CSN2P05814 226 aa0.59□□□□□ -2.31
CCDC88A-212ENST00000474059 OGNP20774 298 aaKnown RBP0.59□□□□□ -2.31
CCDC88A-212ENST00000474059 TMBIM6P55061 237 aa0.59□□□□□ -2.31
CCDC88A-212ENST00000474059 POU6F1Q14863 301 aa0.59□□□□□ -2.31
CCDC88A-212ENST00000474059 GRINAQ7Z429 371 aa0.59□□□□□ -2.31
CCDC88A-212ENST00000474059 TMED4Q7Z7H5 227 aa0.59□□□□□ -2.31
CCDC88A-212ENST00000474059 Q8N6K4 173 aa0.59□□□□□ -2.31
CCDC88A-212ENST00000474059 PLPP5Q8NEB5 264 aa0.59□□□□□ -2.31
CCDC88A-212ENST00000474059 OR4K15Q8NH41 348 aa0.59□□□□□ -2.31
CCDC88A-212ENST00000474059 PPTC7Q8NI37 304 aa0.59□□□□□ -2.31
CCDC88A-212ENST00000474059 CHCHD1Q96BP2 118 aaKnown RBP0.59□□□□□ -2.31
CCDC88A-212ENST00000474059 ZNF714Q96N38 554 aa0.59□□□□□ -2.31
CCDC88A-212ENST00000474059 PBOV1Q9GZY1 135 aa0.59□□□□□ -2.31
CCDC88A-212ENST00000474059 PIK3C2AO00443 1686 aa0.59□□□□□ -2.32
CCDC88A-212ENST00000474059 ADGBQ8N7X0 1667 aa0.59□□□□□ -2.32
CCDC88A-212ENST00000474059 MYH2Q9UKX2 1941 aa0.58□□□□□ -2.32
CCDC88A-212ENST00000474059 OR2T8A6NH00 312 aa0.58□□□□□ -2.32
CCDC88A-212ENST00000474059 TMEM238C9JI98 176 aa0.58□□□□□ -2.32
CCDC88A-212ENST00000474059 CXCL8P10145 99 aa0.58□□□□□ -2.32
CCDC88A-212ENST00000474059 RAB5CP51148 216 aa0.58□□□□□ -2.32
CCDC88A-212ENST00000474059 EFNA4P52798 201 aa0.58□□□□□ -2.32
CCDC88A-212ENST00000474059 TAS2R41P59536 307 aa0.58□□□□□ -2.32
CCDC88A-212ENST00000474059 KLRD1Q13241 179 aa0.58□□□□□ -2.32
Retrieved 100 of 20,778 RNA–protein pairs in 52.9 ms