RNA–Protein interactions for RNA: ENST00000472880.1

COL9A3-210, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 959 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-210ENST00000472880 DKK2Q9UBU2 259 aa14.11□□□□□ -0.15
COL9A3-210ENST00000472880 LOC102723971A0A1B0GUV8 181 aa14.1□□□□□ -0.15
COL9A3-210ENST00000472880 ZNF98A6NK75 572 aa14.1□□□□□ -0.15
COL9A3-210ENST00000472880 H3BP45 60 aa14.1□□□□□ -0.15
COL9A3-210ENST00000472880 ORM2P19652 201 aa14.1□□□□□ -0.15
COL9A3-210ENST00000472880 UBE2DNLQ8IWF7 75 aa14.1□□□□□ -0.15
COL9A3-210ENST00000472880 FAM210BQ96KR6 192 aa14.1□□□□□ -0.15
COL9A3-210ENST00000472880 C20orf173Q96LM9 149 aa14.1□□□□□ -0.15
COL9A3-210ENST00000472880 RSG1Q9BU20 258 aa14.1□□□□□ -0.15
COL9A3-210ENST00000472880 TMEM147Q9BVK8 224 aa14.1□□□□□ -0.15
COL9A3-210ENST00000472880 KRTAP17-1Q9BYP8 105 aa14.1□□□□□ -0.15
COL9A3-210ENST00000472880 RRN3P1Q2M238 152 aa14.09□□□□□ -0.15
COL9A3-210ENST00000472880 ACOT7LQ6ZUV0 252 aa14.09□□□□□ -0.15
COL9A3-210ENST00000472880 C1orf158Q8N1D5 194 aa14.09□□□□□ -0.15
COL9A3-210ENST00000472880 OR4D5Q8NGN0 318 aa14.09□□□□□ -0.15
COL9A3-210ENST00000472880 OR1B1Q8NGR6 318 aa14.09□□□□□ -0.15
COL9A3-210ENST00000472880 GPR82Q96P67 336 aa14.09□□□□□ -0.15
COL9A3-210ENST00000472880 STRAPQ9Y3F4 350 aaKnown RBP14.09□□□□□ -0.15
COL9A3-210ENST00000472880 YTHDF2Q9Y5A9 579 aaKnown RBP14.09□□□□□ -0.15
COL9A3-210ENST00000472880 M0R2N4 97 aa14.08□□□□□ -0.16
COL9A3-210ENST00000472880 IFNA21P01568 189 aa14.08□□□□□ -0.16
COL9A3-210ENST00000472880 TCRBP04435 133 aa14.08□□□□□ -0.16
COL9A3-210ENST00000472880 HTN3P15516 51 aa14.08□□□□□ -0.16
COL9A3-210ENST00000472880 GATA2P23769 480 aaPredicted RBP14.08□□□□□ -0.16
COL9A3-210ENST00000472880 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa14.08□□□□□ -0.16
COL9A3-210ENST00000472880 TMEM208Q9BTX3 173 aa14.08□□□□□ -0.16
COL9A3-210ENST00000472880 SMCO3A2RU48 225 aa14.07□□□□□ -0.16
COL9A3-210ENST00000472880 MITD1Q8WV92 249 aa14.07□□□□□ -0.16
COL9A3-210ENST00000472880 BATF3Q9NR55 127 aa14.07□□□□□ -0.16
COL9A3-210ENST00000472880 A8MTW9 85 aa14.06□□□□□ -0.16
COL9A3-210ENST00000472880 OXA1LQ15070 435 aa14.06□□□□□ -0.16
COL9A3-210ENST00000472880 TMEM182Q6ZP80 229 aaPredicted RBP14.06□□□□□ -0.16
COL9A3-210ENST00000472880 IGF2BP2-AS1Q96M15 143 aa14.06□□□□□ -0.16
COL9A3-210ENST00000472880 NUDT15Q9NV35 164 aa14.06□□□□□ -0.16
COL9A3-210ENST00000472880 TRAV6A0A075B6T7 132 aa14.05□□□□□ -0.16
COL9A3-210ENST00000472880 DUSP14O95147 198 aaKnown RBP14.05□□□□□ -0.16
COL9A3-210ENST00000472880 DAD1P61803 113 aa14.05□□□□□ -0.16
COL9A3-210ENST00000472880 ID3Q02535 119 aa14.05□□□□□ -0.16
COL9A3-210ENST00000472880 FGL1Q08830 312 aa14.05□□□□□ -0.16
COL9A3-210ENST00000472880 ZNF846Q147U1 533 aa14.05□□□□□ -0.16
COL9A3-210ENST00000472880 AMTNQ6UX39 209 aa14.05□□□□□ -0.16
COL9A3-210ENST00000472880 TMEM144Q7Z5S9 345 aa14.05□□□□□ -0.16
COL9A3-210ENST00000472880 C17orf77Q96MU5 243 aa14.05□□□□□ -0.16
COL9A3-210ENST00000472880 PLA2G2EQ9NZK7 142 aa14.05□□□□□ -0.16
COL9A3-210ENST00000472880 PRSS29PA6NIE9 313 aa14.04□□□□□ -0.16
COL9A3-210ENST00000472880 H3BRN7 92 aa14.04□□□□□ -0.16
COL9A3-210ENST00000472880 INSP01308 110 aa14.04□□□□□ -0.16
COL9A3-210ENST00000472880 IL5P05113 134 aa14.04□□□□□ -0.16
COL9A3-210ENST00000472880 CNN1P51911 297 aaKnown RBP14.04□□□□□ -0.16
COL9A3-210ENST00000472880 RAP2BP61225 183 aa14.04□□□□□ -0.16
COL9A3-210ENST00000472880 POLR2GP62487 172 aaKnown RBP eCLIP14.04□□□□□ -0.16
COL9A3-210ENST00000472880 ASAH1Q13510 395 aa14.04□□□□□ -0.16
COL9A3-210ENST00000472880 LGALS9BQ3B8N2 356 aa14.04□□□□□ -0.16
COL9A3-210ENST00000472880 CYP2G1PQ6ZSU1 146 aa14.04□□□□□ -0.16
COL9A3-210ENST00000472880 PSENENQ9NZ42 101 aa14.04□□□□□ -0.16
COL9A3-210ENST00000472880 HIGD1AQ9Y241 93 aa14.04□□□□□ -0.16
COL9A3-210ENST00000472880 A0A1B0GVY2 172 aa14.03□□□□□ -0.16
COL9A3-210ENST00000472880 FAM240BA0A1B0GVZ2 78 aa14.03□□□□□ -0.16
COL9A3-210ENST00000472880 M0R2Z0 102 aa14.03□□□□□ -0.16
COL9A3-210ENST00000472880 UPK1BO75841 260 aa14.03□□□□□ -0.16
COL9A3-210ENST00000472880 SPINK13Q1W4C9 94 aa14.03□□□□□ -0.16
COL9A3-210ENST00000472880 IGFL4Q6B9Z1 124 aa14.03□□□□□ -0.16
COL9A3-210ENST00000472880 MZT2BQ6NZ67 158 aa14.03□□□□□ -0.16
COL9A3-210ENST00000472880 RNF182Q8N6D2 247 aa14.03□□□□□ -0.16
COL9A3-210ENST00000472880 OR11H7Q8NGC8 314 aa14.03□□□□□ -0.16
COL9A3-210ENST00000472880 SHANK2-AS3Q9BTD1 123 aa14.03□□□□□ -0.16
COL9A3-210ENST00000472880 SLC25A39Q9BZJ4 359 aaPredicted RBP14.03□□□□□ -0.16
COL9A3-210ENST00000472880 KIAA1109Q2LD37 5005 aa14.02□□□□□ -0.16
COL9A3-210ENST00000472880 FAT2Q9NYQ8 4349 aa14.02□□□□□ -0.16
COL9A3-210ENST00000472880 IGLV2-18A0A075B6J9 118 aa14.02□□□□□ -0.17
COL9A3-210ENST00000472880 TRAV8-2A0A0B4J237 113 aa14.02□□□□□ -0.17
COL9A3-210ENST00000472880 RTL8CO15255 209 aa14.02□□□□□ -0.17
COL9A3-210ENST00000472880 SSSCA1O60232 199 aa14.02□□□□□ -0.17
COL9A3-210ENST00000472880 H2AFB2P0C5Z0 115 aa14.02□□□□□ -0.17
COL9A3-210ENST00000472880 LINC00869P0C866 280 aa14.02□□□□□ -0.17
COL9A3-210ENST00000472880 RPL7P18124 248 aaKnown RBP14.02□□□□□ -0.17
COL9A3-210ENST00000472880 IAH1Q2TAA2 248 aaPredicted RBP14.02□□□□□ -0.17
COL9A3-210ENST00000472880 TMEM88Q6PEY1 159 aa14.02□□□□□ -0.17
COL9A3-210ENST00000472880 ZNF738Q8NE65 137 aa14.02□□□□□ -0.17
COL9A3-210ENST00000472880 SEC22CQ9BRL7 303 aa14.02□□□□□ -0.17
COL9A3-210ENST00000472880 HYPMO75409 117 aa14.01□□□□□ -0.17
COL9A3-210ENST00000472880 OR5G3P0C626 314 aa14.01□□□□□ -0.17
COL9A3-210ENST00000472880 S100A7AQ86SG5 101 aa14.01□□□□□ -0.17
COL9A3-210ENST00000472880 ZBTB8BQ8NAP8 495 aaPredicted RBP14.01□□□□□ -0.17
COL9A3-210ENST00000472880 ZNF431Q8TF32 576 aaPredicted RBP14.01□□□□□ -0.17
COL9A3-210ENST00000472880 B2MP61769 119 aa14□□□□□ -0.17
COL9A3-210ENST00000472880 RRAS2P62070 204 aaPredicted RBP14□□□□□ -0.17
COL9A3-210ENST00000472880 SELENOTP62341 195 aa14□□□□□ -0.17
COL9A3-210ENST00000472880 IFITM3Q01628 133 aa14□□□□□ -0.17
COL9A3-210ENST00000472880 RNF212Q495C1 297 aa14□□□□□ -0.17
COL9A3-210ENST00000472880 DNAH2Q9P225 4427 aa14□□□□□ -0.17
COL9A3-210ENST00000472880 LYRM9A8MSI8 78 aa13.99□□□□□ -0.17
COL9A3-210ENST00000472880 ZNF705GA8MUZ8 300 aaPredicted RBP13.99□□□□□ -0.17
COL9A3-210ENST00000472880 BOLA2-SMG1P6H3BVE0 249 aa13.99□□□□□ -0.17
COL9A3-210ENST00000472880 CCSO14618 274 aa13.99□□□□□ -0.17
COL9A3-210ENST00000472880 CRXO43186 299 aaPredicted RBP13.99□□□□□ -0.17
COL9A3-210ENST00000472880 SCGB1D2O95969 90 aa13.99□□□□□ -0.17
COL9A3-210ENST00000472880 PLP1P60201 277 aa13.99□□□□□ -0.17
COL9A3-210ENST00000472880 DLK1P80370 383 aa13.99□□□□□ -0.17
COL9A3-210ENST00000472880 BAP18Q8IXM2 172 aa13.99□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 69.9 ms