RNA–Protein interactions for RNA: ENST00000472308.1

SHH-205, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 504 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-205ENST00000472308 NAA60Q9H7X0 242 aa12.57□□□□□ -0.4
SHH-205ENST00000472308 COMMD3Q9UBI1 195 aa12.57□□□□□ -0.4
SHH-205ENST00000472308 LRP1Q07954 4544 aaKnown RBP12.56□□□□□ -0.4
SHH-205ENST00000472308 A0A087WTM6 91 aa12.56□□□□□ -0.4
SHH-205ENST00000472308 IFNA5P01569 189 aa12.56□□□□□ -0.4
SHH-205ENST00000472308 GPX4P36969 197 aaPredicted RBP12.56□□□□□ -0.4
SHH-205ENST00000472308 ZNF493Q6ZR52 646 aa12.56□□□□□ -0.4
SHH-205ENST00000472308 DTD1Q8TEA8 209 aa12.56□□□□□ -0.4
SHH-205ENST00000472308 TRGV9Q99603 122 aa12.56□□□□□ -0.4
SHH-205ENST00000472308 RTBDNQ9BSG5 229 aaPredicted RBP12.56□□□□□ -0.4
SHH-205ENST00000472308 A0A096LPF7 62 aa12.55□□□□□ -0.4
SHH-205ENST00000472308 SMIM31A0A1B0GVY4 71 aa12.55□□□□□ -0.4
SHH-205ENST00000472308 FABP1P07148 127 aa12.55□□□□□ -0.4
SHH-205ENST00000472308 ZNF182P17025 639 aaPredicted RBP12.55□□□□□ -0.4
SHH-205ENST00000472308 HSPB7Q9UBY9 170 aa12.55□□□□□ -0.4
SHH-205ENST00000472308 GABARAPH6UMI1 98 aa12.54□□□□□ -0.4
SHH-205ENST00000472308 GABARAPO95166 117 aa12.54□□□□□ -0.4
SHH-205ENST00000472308 SULT1A3P0DMM9 295 aa12.54□□□□□ -0.4
SHH-205ENST00000472308 SULT1A4P0DMN0 295 aa12.54□□□□□ -0.4
SHH-205ENST00000472308 PRB4P10163 310 aaPredicted RBP12.54□□□□□ -0.4
SHH-205ENST00000472308 TBPP20226 339 aa12.54□□□□□ -0.4
SHH-205ENST00000472308 LSM3P62310 102 aaKnown RBP12.54□□□□□ -0.4
SHH-205ENST00000472308 HIST1H1AQ02539 215 aaPredicted RBP12.54□□□□□ -0.4
SHH-205ENST00000472308 SCGB2B2Q4G0G5 96 aa12.54□□□□□ -0.4
SHH-205ENST00000472308 THAP8Q8NA92 274 aa12.54□□□□□ -0.4
SHH-205ENST00000472308 ZNF738Q8NE65 137 aa12.54□□□□□ -0.4
SHH-205ENST00000472308 OR4D5Q8NGN0 318 aa12.54□□□□□ -0.4
SHH-205ENST00000472308 OR52I2Q8NH67 350 aa12.54□□□□□ -0.4
SHH-205ENST00000472308 VSIG2Q96IQ7 327 aa12.54□□□□□ -0.4
SHH-205ENST00000472308 RBKSQ9H477 322 aa12.54□□□□□ -0.4
SHH-205ENST00000472308 TMEM56-RWDD3S4R434 201 aa12.54□□□□□ -0.4
SHH-205ENST00000472308 GAGE12BA1L429 117 aa12.53□□□□□ -0.4
SHH-205ENST00000472308 SIVA1O15304 175 aa12.53□□□□□ -0.4
SHH-205ENST00000472308 GAGE7O76087 117 aa12.53□□□□□ -0.4
SHH-205ENST00000472308 GAGE12FP0CL80 117 aa12.53□□□□□ -0.4
SHH-205ENST00000472308 GAGE12GP0CL81 117 aa12.53□□□□□ -0.4
SHH-205ENST00000472308 GAGE12IP0CL82 117 aa12.53□□□□□ -0.4
SHH-205ENST00000472308 OR8A1Q8NGG7 326 aa12.53□□□□□ -0.4
SHH-205ENST00000472308 OR1B1Q8NGR6 318 aa12.53□□□□□ -0.4
SHH-205ENST00000472308 TMPRSS5Q9H3S3 457 aa12.53□□□□□ -0.4
SHH-205ENST00000472308 PRR13Q9NZ81 148 aa12.53□□□□□ -0.4
SHH-205ENST00000472308 CACFD1Q9UGQ2 172 aa12.53□□□□□ -0.4
SHH-205ENST00000472308 SLC45A2Q9UMX9 530 aa12.53□□□□□ -0.4
SHH-205ENST00000472308 HPGDSO60760 199 aa12.52□□□□□ -0.41
SHH-205ENST00000472308 ADAP1O75689 374 aa12.52□□□□□ -0.41
SHH-205ENST00000472308 GCSHP23434 173 aa12.52□□□□□ -0.41
SHH-205ENST00000472308 RHOBP62745 196 aa12.52□□□□□ -0.41
SHH-205ENST00000472308 KIR3DS1Q14943 382 aa12.52□□□□□ -0.41
SHH-205ENST00000472308 MTFP1Q9UDX5 166 aa12.52□□□□□ -0.41
SHH-205ENST00000472308 CRYM-AS1A6NIL9 109 aa12.51□□□□□ -0.41
SHH-205ENST00000472308 H7BYZ3 331 aa12.51□□□□□ -0.41
SHH-205ENST00000472308 TNFAIP8O95379 198 aa12.51□□□□□ -0.41
SHH-205ENST00000472308 FGL1Q08830 312 aa12.51□□□□□ -0.41
SHH-205ENST00000472308 TMEM182Q6ZP80 229 aaPredicted RBP12.51□□□□□ -0.41
SHH-205ENST00000472308 GPR82Q96P67 336 aa12.51□□□□□ -0.41
SHH-205ENST00000472308 KRTAP29-1A8MX34 341 aaPredicted RBP12.5□□□□□ -0.41
SHH-205ENST00000472308 NXPH4O95158 308 aa12.5□□□□□ -0.41
SHH-205ENST00000472308 GATA2P23769 480 aaPredicted RBP12.5□□□□□ -0.41
SHH-205ENST00000472308 CDKN1BP46527 198 aa12.5□□□□□ -0.41
SHH-205ENST00000472308 ATP5IP56385 69 aaPredicted RBP12.5□□□□□ -0.41
SHH-205ENST00000472308 GPR107Q5VW38 600 aa12.5□□□□□ -0.41
SHH-205ENST00000472308 FAAP20Q6NZ36 180 aa12.5□□□□□ -0.41
SHH-205ENST00000472308 C14orf166Q9Y224 244 aaKnown RBP12.5□□□□□ -0.41
SHH-205ENST00000472308 FAT3Q8TDW7 4589 aa12.5□□□□□ -0.41
SHH-205ENST00000472308 RAB3DO95716 219 aa12.49□□□□□ -0.41
SHH-205ENST00000472308 CFDP00746 253 aaPredicted RBP12.49□□□□□ -0.41
SHH-205ENST00000472308 RLN2P04090 185 aa12.49□□□□□ -0.41
SHH-205ENST00000472308 ORM2P19652 201 aa12.49□□□□□ -0.41
SHH-205ENST00000472308 CXCL3P19876 107 aa12.49□□□□□ -0.41
SHH-205ENST00000472308 GGNBP1Q5YKI7 109 aa12.49□□□□□ -0.41
SHH-205ENST00000472308 TMEM229BQ8NBD8 167 aa12.49□□□□□ -0.41
SHH-205ENST00000472308 YIPF6Q96EC8 236 aa12.49□□□□□ -0.41
SHH-205ENST00000472308 PPP1R14DQ9NXH3 145 aa12.49□□□□□ -0.41
SHH-205ENST00000472308 CCR6P51684 374 aa12.48□□□□□ -0.41
SHH-205ENST00000472308 SMCO1Q147U7 214 aa12.48□□□□□ -0.41
SHH-205ENST00000472308 TMED4Q7Z7H5 227 aa12.48□□□□□ -0.41
SHH-205ENST00000472308 NFE4Q86UQ8 179 aa12.48□□□□□ -0.41
SHH-205ENST00000472308 IL22RA2Q969J5 263 aa12.48□□□□□ -0.41
SHH-205ENST00000472308 H3BRN7 92 aa12.47□□□□□ -0.41
SHH-205ENST00000472308 TAS2R19P59542 299 aa12.47□□□□□ -0.41
SHH-205ENST00000472308 STEAP1BQ6NZ63 245 aa12.47□□□□□ -0.41
SHH-205ENST00000472308 Q6ZTI0 123 aa12.47□□□□□ -0.41
SHH-205ENST00000472308 TMEM147Q9BVK8 224 aa12.47□□□□□ -0.41
SHH-205ENST00000472308 PARD6GQ9BYG4 376 aaPredicted RBP12.47□□□□□ -0.41
SHH-205ENST00000472308 PRSS46E5RG02 174 aa12.46□□□□□ -0.41
SHH-205ENST00000472308 SURF2Q15527 256 aaPredicted RBP12.46□□□□□ -0.41
SHH-205ENST00000472308 PSG3Q16557 428 aa12.46□□□□□ -0.41
SHH-205ENST00000472308 GFI1BQ5VTD9 330 aa12.46□□□□□ -0.41
SHH-205ENST00000472308 LYZL2Q7Z4W2 148 aa12.46□□□□□ -0.41
SHH-205ENST00000472308 C20orf144Q9BQM9 153 aa12.46□□□□□ -0.41
SHH-205ENST00000472308 TMEM70Q9BUB7 260 aa12.46□□□□□ -0.41
SHH-205ENST00000472308 GPR132Q9UNW8 380 aa12.46□□□□□ -0.41
SHH-205ENST00000472308 NCS1P62166 190 aa12.45□□□□□ -0.42
SHH-205ENST00000472308 SERTAD4-AS1Q5TG53 156 aa12.45□□□□□ -0.42
SHH-205ENST00000472308 BPIFCQ8NFQ6 507 aa12.45□□□□□ -0.42
SHH-205ENST00000472308 RPUSD4Q96CM3 377 aaKnown RBP12.45□□□□□ -0.42
SHH-205ENST00000472308 SHANK2-AS3Q9BTD1 123 aa12.45□□□□□ -0.42
SHH-205ENST00000472308 A0A087X0K7 114 aa12.44□□□□□ -0.42
SHH-205ENST00000472308 A0A0B4J2A0 478 aa12.44□□□□□ -0.42
SHH-205ENST00000472308 SNURFLB1AK76 121 aa12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 52.6 ms