RNA–Protein interactions for RNA: ENST00000464956.1

USP40-211, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 185 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-211ENST00000464956 ARL2BPQ9Y2Y0 163 aa1.44□□□□□ -2.18
USP40-211ENST00000464956 A0A087WZ39 114 aa1.43□□□□□ -2.18
USP40-211ENST00000464956 TRAV4A0A0B4J268 109 aa1.43□□□□□ -2.18
USP40-211ENST00000464956 MEIS3P1A6NDR6 274 aa1.43□□□□□ -2.18
USP40-211ENST00000464956 CRYM-AS1A6NIL9 109 aa1.43□□□□□ -2.18
USP40-211ENST00000464956 TMEM212A6NML5 194 aa1.43□□□□□ -2.18
USP40-211ENST00000464956 ZAR1LA6NP61 321 aa1.43□□□□□ -2.18
USP40-211ENST00000464956 F5H697 171 aa1.43□□□□□ -2.18
USP40-211ENST00000464956 J3KRW8 73 aa1.43□□□□□ -2.18
USP40-211ENST00000464956 TOMM40O96008 361 aa1.43□□□□□ -2.18
USP40-211ENST00000464956 SLPIP03973 132 aa1.43□□□□□ -2.18
USP40-211ENST00000464956 SHBGP04278 402 aa1.43□□□□□ -2.18
USP40-211ENST00000464956 FABP3P05413 133 aa1.43□□□□□ -2.18
USP40-211ENST00000464956 RD3LP0DJH9 198 aa1.43□□□□□ -2.18
USP40-211ENST00000464956 HLA-DMAP28067 261 aa1.43□□□□□ -2.18
USP40-211ENST00000464956 OR10J1P30954 320 aa1.43□□□□□ -2.18
USP40-211ENST00000464956 LEPP41159 167 aa1.43□□□□□ -2.18
USP40-211ENST00000464956 CBX5P45973 191 aa1.43□□□□□ -2.18
USP40-211ENST00000464956 HSPA13P48723 471 aa1.43□□□□□ -2.18
USP40-211ENST00000464956 HMGA2P52926 109 aa1.43□□□□□ -2.18
USP40-211ENST00000464956 SUB1P53999 127 aaKnown RBP eCLIP1.43□□□□□ -2.18
USP40-211ENST00000464956 TSPAN5P62079 268 aa1.43□□□□□ -2.18
USP40-211ENST00000464956 MS4A2Q01362 244 aa1.43□□□□□ -2.18
USP40-211ENST00000464956 BTN1A1Q13410 526 aa1.43□□□□□ -2.18
USP40-211ENST00000464956 RHOHQ15669 191 aa1.43□□□□□ -2.18
USP40-211ENST00000464956 MIAQ16674 131 aa1.43□□□□□ -2.18
USP40-211ENST00000464956 ZNF674Q2M3X9 581 aa1.43□□□□□ -2.18
USP40-211ENST00000464956 MEDAGQ5VYS4 303 aa1.43□□□□□ -2.18
USP40-211ENST00000464956 OR2T5Q6IEZ7 315 aa1.43□□□□□ -2.18
USP40-211ENST00000464956 EIF5AL1Q6IS14 154 aaKnown RBP1.43□□□□□ -2.18
USP40-211ENST00000464956 KRTAP5-10Q6L8G5 202 aa1.43□□□□□ -2.18
USP40-211ENST00000464956 Q6Q795 121 aa1.43□□□□□ -2.18
USP40-211ENST00000464956 ENHOQ6UWT2 76 aa1.43□□□□□ -2.18
USP40-211ENST00000464956 ZNF546Q86UE3 836 aa1.43□□□□□ -2.18
USP40-211ENST00000464956 LHFPL3Q86UP9 236 aa1.43□□□□□ -2.18
USP40-211ENST00000464956 SPAG16Q8N0X2 631 aa1.43□□□□□ -2.18
USP40-211ENST00000464956 JAGN1Q8N5M9 183 aa1.43□□□□□ -2.18
USP40-211ENST00000464956 EIF4E3Q8N5X7 224 aaKnown RBP1.43□□□□□ -2.18
USP40-211ENST00000464956 RNF182Q8N6D2 247 aa1.43□□□□□ -2.18
USP40-211ENST00000464956 BPIFB6Q8NFQ5 453 aa1.43□□□□□ -2.18
USP40-211ENST00000464956 BPIFCQ8NFQ6 507 aa1.43□□□□□ -2.18
USP40-211ENST00000464956 OR10P1Q8NGE3 313 aa1.43□□□□□ -2.18
USP40-211ENST00000464956 OR51G1Q8NGK1 321 aa1.43□□□□□ -2.18
USP40-211ENST00000464956 OR2T29Q8NH02 315 aa1.43□□□□□ -2.18
USP40-211ENST00000464956 RAB3CQ96E17 227 aa1.43□□□□□ -2.18
USP40-211ENST00000464956 SLC50A1Q9BRV3 221 aa1.43□□□□□ -2.18
USP40-211ENST00000464956 HDHD3Q9BSH5 251 aaPredicted RBP1.43□□□□□ -2.18
USP40-211ENST00000464956 RSG1Q9BU20 258 aa1.43□□□□□ -2.18
USP40-211ENST00000464956 PBDC1Q9BVG4 233 aa1.43□□□□□ -2.18
USP40-211ENST00000464956 PRR34Q9NV39 138 aa1.43□□□□□ -2.18
USP40-211ENST00000464956 GID8Q9NWU2 228 aa1.43□□□□□ -2.18
USP40-211ENST00000464956 TAS2R8Q9NYW2 309 aa1.43□□□□□ -2.18
USP40-211ENST00000464956 CKLFQ9UBR5 152 aa1.43□□□□□ -2.18
USP40-211ENST00000464956 AK3Q9UIJ7 227 aa1.43□□□□□ -2.18
USP40-211ENST00000464956 DAPK2Q9UIK4 370 aa1.43□□□□□ -2.18
USP40-211ENST00000464956 UBE2D4Q9Y2X8 147 aa1.43□□□□□ -2.18
USP40-211ENST00000464956 TMEM56-RWDD3S4R434 201 aa1.43□□□□□ -2.18
USP40-211ENST00000464956 MDN1Q9NU22 5596 aa1.43□□□□□ -2.18
USP40-211ENST00000464956 A0A087X002 238 aa1.42□□□□□ -2.18
USP40-211ENST00000464956 IGHV3-16A0A0C4DH30 117 aa1.42□□□□□ -2.18
USP40-211ENST00000464956 FXYD1O00168 92 aa1.42□□□□□ -2.18
USP40-211ENST00000464956 NDUFAB1O14561 156 aa1.42□□□□□ -2.18
USP40-211ENST00000464956 MRASO14807 208 aa1.42□□□□□ -2.18
USP40-211ENST00000464956 RGS13O14921 159 aa1.42□□□□□ -2.18
USP40-211ENST00000464956 TNFSF12O43508 249 aa1.42□□□□□ -2.18
USP40-211ENST00000464956 ANGP03950 147 aaKnown RBP1.42□□□□□ -2.18
USP40-211ENST00000464956 IGLC1P0CG04 106 aa1.42□□□□□ -2.18
USP40-211ENST00000464956 AMTP48728 403 aa1.42□□□□□ -2.18
USP40-211ENST00000464956 QRFPP83859 136 aa1.42□□□□□ -2.18
USP40-211ENST00000464956 FOXI1Q12951 378 aa1.42□□□□□ -2.18
USP40-211ENST00000464956 CATR1Q13166 79 aa1.42□□□□□ -2.18
USP40-211ENST00000464956 FLOT2Q14254 428 aa1.42□□□□□ -2.18
USP40-211ENST00000464956 RAB11BQ15907 218 aa1.42□□□□□ -2.18
USP40-211ENST00000464956 LCE3BQ5TA77 95 aa1.42□□□□□ -2.18
USP40-211ENST00000464956 IGFL4Q6B9Z1 124 aa1.42□□□□□ -2.18
USP40-211ENST00000464956 EPGNQ6UW88 154 aa1.42□□□□□ -2.18
USP40-211ENST00000464956 DHRS11Q6UWP2 260 aa1.42□□□□□ -2.18
USP40-211ENST00000464956 ARPINQ7Z6K5 226 aa1.42□□□□□ -2.18
USP40-211ENST00000464956 GID4Q8IVV7 300 aa1.42□□□□□ -2.18
USP40-211ENST00000464956 H1FOOQ8IZA3 346 aaPredicted RBP1.42□□□□□ -2.18
USP40-211ENST00000464956 C15orf54Q8N8G6 183 aa1.42□□□□□ -2.18
USP40-211ENST00000464956 CYB561D1Q8N8Q1 229 aa1.42□□□□□ -2.18
USP40-211ENST00000464956 CCDC197Q8NCU1 140 aa1.42□□□□□ -2.18
USP40-211ENST00000464956 OR4D10Q8NGI6 311 aa1.42□□□□□ -2.18
USP40-211ENST00000464956 OR8J1Q8NGP2 316 aa1.42□□□□□ -2.18
USP40-211ENST00000464956 OR4A16Q8NH70 328 aa1.42□□□□□ -2.18
USP40-211ENST00000464956 OR5AK2Q8NH90 309 aa1.42□□□□□ -2.18
USP40-211ENST00000464956 RASL10AQ92737 203 aa1.42□□□□□ -2.18
USP40-211ENST00000464956 TSC22D3Q99576 134 aa1.42□□□□□ -2.18
USP40-211ENST00000464956 NIPSNAP1Q9BPW8 284 aa1.42□□□□□ -2.18
USP40-211ENST00000464956 PAIP2Q9BPZ3 127 aaKnown RBP1.42□□□□□ -2.18
USP40-211ENST00000464956 CMSS1Q9BQ75 279 aaKnown RBP1.42□□□□□ -2.18
USP40-211ENST00000464956 GFRA4Q9GZZ7 299 aa1.42□□□□□ -2.18
USP40-211ENST00000464956 WFDC1Q9HC57 220 aa1.42□□□□□ -2.18
USP40-211ENST00000464956 COMMD9Q9P000 198 aa1.42□□□□□ -2.18
USP40-211ENST00000464956 NDUFA12Q9UI09 145 aa1.42□□□□□ -2.18
USP40-211ENST00000464956 OAZ3Q9UMX2 235 aa1.42□□□□□ -2.18
USP40-211ENST00000464956 TRAV6A0A075B6T7 132 aa1.41□□□□□ -2.18
USP40-211ENST00000464956 TRBV6-4A0A1B0GX49 114 aa1.41□□□□□ -2.18
USP40-211ENST00000464956 ERICH4A6NGS2 130 aa1.41□□□□□ -2.18
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms