RNA–Protein interactions for RNA: ENST00000460912.6

SYNE1-215, Transcript of spectrin repeat containing nuclear envelope protein 1, human

TSL 1 (best)

Gene SYNE1, Length 3,664 nt, Biotype processed transcript, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE1-215	ENST00000460912	C1RL	Q9NZP8	487 aa		6.91	□□□□□ -1.3
SYNE1-215	ENST00000460912	EPDR1	Q9UM22	224 aa		6.91	□□□□□ -1.3
SYNE1-215	ENST00000460912		A0A096LNT2	108 aa		6.91	□□□□□ -1.3
SYNE1-215	ENST00000460912	VSTM5	A8MXK1	200 aa		6.91	□□□□□ -1.3
SYNE1-215	ENST00000460912	EGR2	P11161	476 aa	Predicted RBP	6.91	□□□□□ -1.3
SYNE1-215	ENST00000460912	ERH	P84090	104 aa	Known RBP	6.91	□□□□□ -1.3
SYNE1-215	ENST00000460912	IQCJ	Q1A5X6	159 aa		6.91	□□□□□ -1.3
SYNE1-215	ENST00000460912	OR1L4	Q8NGR5	311 aa		6.91	□□□□□ -1.3
SYNE1-215	ENST00000460912	C18orf32	Q8TCD1	76 aa		6.91	□□□□□ -1.3
SYNE1-215	ENST00000460912	GRAMD2B	Q96HH9	432 aa		6.91	□□□□□ -1.3
SYNE1-215	ENST00000460912	RALY	Q9UKM9	306 aa	Known RBP	6.91	□□□□□ -1.3
SYNE1-215	ENST00000460912	SUMO1	P63165	101 aa	Known RBP	6.9	□□□□□ -1.3
SYNE1-215	ENST00000460912	IBA57	Q5T440	356 aa	Known RBP	6.9	□□□□□ -1.3
SYNE1-215	ENST00000460912	C10orf113	Q5VZT2	155 aa		6.9	□□□□□ -1.3
SYNE1-215	ENST00000460912	ATP5L2	Q7Z4Y8	100 aa		6.9	□□□□□ -1.3
SYNE1-215	ENST00000460912	SPATA12	Q7Z6I5	190 aa		6.9	□□□□□ -1.3
SYNE1-215	ENST00000460912	OR10X1	Q8NGY0	326 aa		6.9	□□□□□ -1.3
SYNE1-215	ENST00000460912	KCNS1	Q96KK3	526 aa		6.9	□□□□□ -1.3
SYNE1-215	ENST00000460912	VAMP8	Q9BV40	100 aa		6.9	□□□□□ -1.3
SYNE1-215	ENST00000460912	GFRA4	Q9GZZ7	299 aa		6.9	□□□□□ -1.3
SYNE1-215	ENST00000460912	ZNF586	Q9NXT0	402 aa		6.9	□□□□□ -1.3
SYNE1-215	ENST00000460912	HIVEP3	Q5T1R4	2406 aa		6.9	□□□□□ -1.3
SYNE1-215	ENST00000460912	COL6A6	A6NMZ7	2263 aa		6.9	□□□□□ -1.3
SYNE1-215	ENST00000460912	FCN1	O00602	326 aa		6.9	□□□□□ -1.3
SYNE1-215	ENST00000460912	SPINK4	O60575	86 aa		6.9	□□□□□ -1.3
SYNE1-215	ENST00000460912	PAX8	Q06710	450 aa		6.9	□□□□□ -1.3
SYNE1-215	ENST00000460912	COL5A1-AS1	Q5SY13	56 aa		6.9	□□□□□ -1.3
SYNE1-215	ENST00000460912	LINC00305	Q7Z4B0	112 aa		6.9	□□□□□ -1.3
SYNE1-215	ENST00000460912	CMTM2	Q8TAZ6	248 aa		6.9	□□□□□ -1.3
SYNE1-215	ENST00000460912	TSKU	Q8WUA8	353 aa		6.9	□□□□□ -1.3
SYNE1-215	ENST00000460912	PAXX	Q9BUH6	204 aa		6.9	□□□□□ -1.3
SYNE1-215	ENST00000460912	APC	P25054	2843 aa		6.9	□□□□□ -1.31
SYNE1-215	ENST00000460912	CR1	P17927	2039 aa		6.9	□□□□□ -1.31
SYNE1-215	ENST00000460912	CORT	O00230	105 aa		6.9	□□□□□ -1.31
SYNE1-215	ENST00000460912	WDR73	Q6P4I2	378 aa		6.9	□□□□□ -1.31
SYNE1-215	ENST00000460912	LINC01560	Q8TB33	94 aa		6.9	□□□□□ -1.31
SYNE1-215	ENST00000460912	SPTAN1	Q13813	2472 aa	Known RBP	6.9	□□□□□ -1.31
SYNE1-215	ENST00000460912	C2orf70	A6NJV1	201 aa		6.89	□□□□□ -1.31
SYNE1-215	ENST00000460912	IGHG4	P01861	327 aa		6.89	□□□□□ -1.31
SYNE1-215	ENST00000460912	IER3	P46695	156 aa		6.89	□□□□□ -1.31
SYNE1-215	ENST00000460912	FXYD3	Q14802	87 aa		6.89	□□□□□ -1.31
SYNE1-215	ENST00000460912	PPP1R27	Q86WC6	154 aa		6.89	□□□□□ -1.31
SYNE1-215	ENST00000460912	KRTAP1-3	Q8IUG1	177 aa		6.89	□□□□□ -1.31
SYNE1-215	ENST00000460912	FAM231B	A6NCW3	169 aa		6.89	□□□□□ -1.31
SYNE1-215	ENST00000460912		H3BRN7	92 aa		6.89	□□□□□ -1.31
SYNE1-215	ENST00000460912	CCL17	Q92583	94 aa		6.89	□□□□□ -1.31
SYNE1-215	ENST00000460912	FANCD2OS	Q96PS1	177 aa		6.89	□□□□□ -1.31
SYNE1-215	ENST00000460912	LPAR2	Q9HBW0	351 aa		6.89	□□□□□ -1.31
SYNE1-215	ENST00000460912	MOS	P00540	346 aa		6.89	□□□□□ -1.31
SYNE1-215	ENST00000460912	CA1	P00915	261 aa	Predicted RBP	6.89	□□□□□ -1.31
SYNE1-215	ENST00000460912	FCGR2B	P31994	310 aa	Predicted RBP	6.89	□□□□□ -1.31
SYNE1-215	ENST00000460912	UBE2L3	P68036	154 aa	Known RBP	6.89	□□□□□ -1.31
SYNE1-215	ENST00000460912	PLXNB1	O43157	2135 aa		6.89	□□□□□ -1.31
SYNE1-215	ENST00000460912	USP9X	Q93008	2570 aa	Predicted RBP	6.89	□□□□□ -1.31
SYNE1-215	ENST00000460912	SNURFL	B1AK76	121 aa		6.88	□□□□□ -1.31
SYNE1-215	ENST00000460912	HLA-DQA1	P01909	254 aa		6.88	□□□□□ -1.31
SYNE1-215	ENST00000460912	CRISP2	P16562	243 aa		6.88	□□□□□ -1.31
SYNE1-215	ENST00000460912	RAN	P62826	216 aa	Known RBP	6.88	□□□□□ -1.31
SYNE1-215	ENST00000460912	NHLRC2	Q8NBF2	726 aa		6.88	□□□□□ -1.31
SYNE1-215	ENST00000460912	FMC1	Q96HJ9	113 aa		6.88	□□□□□ -1.31
SYNE1-215	ENST00000460912	CLEC7A	Q9BXN2	247 aa		6.88	□□□□□ -1.31
SYNE1-215	ENST00000460912	IGLV11-55	A0A075B6I3	123 aa		6.88	□□□□□ -1.31
SYNE1-215	ENST00000460912		A0A1B0GW15	77 aa		6.88	□□□□□ -1.31
SYNE1-215	ENST00000460912		K7ERU9	68 aa		6.88	□□□□□ -1.31
SYNE1-215	ENST00000460912	ENSA	O43768	121 aa	Known RBP	6.88	□□□□□ -1.31
SYNE1-215	ENST00000460912	TCRA	P04437	139 aa		6.88	□□□□□ -1.31
SYNE1-215	ENST00000460912	CRIP1	P50238	77 aa		6.88	□□□□□ -1.31
SYNE1-215	ENST00000460912	GNG5	P63218	68 aa		6.88	□□□□□ -1.31
SYNE1-215	ENST00000460912	VMA21	Q3ZAQ7	101 aa		6.88	□□□□□ -1.31
SYNE1-215	ENST00000460912	C19orf54	Q5BKX5	351 aa		6.88	□□□□□ -1.31
SYNE1-215	ENST00000460912	SIGLEC15	Q6ZMC9	328 aa		6.88	□□□□□ -1.31
SYNE1-215	ENST00000460912	C1orf122	Q6ZSJ8	110 aa		6.88	□□□□□ -1.31
SYNE1-215	ENST00000460912	BAGE3	Q86Y29	109 aa		6.88	□□□□□ -1.31
SYNE1-215	ENST00000460912	BAGE2	Q86Y30	109 aa		6.88	□□□□□ -1.31
SYNE1-215	ENST00000460912	BOD1L2	Q8IYS8	172 aa		6.88	□□□□□ -1.31
SYNE1-215	ENST00000460912	TNFRSF19	Q9NS68	423 aa		6.88	□□□□□ -1.31
SYNE1-215	ENST00000460912	OR7C2	O60412	319 aa		6.88	□□□□□ -1.31
SYNE1-215	ENST00000460912		Q86TA4	180 aa		6.88	□□□□□ -1.31
SYNE1-215	ENST00000460912	DYNAP	Q8N1N2	210 aa		6.88	□□□□□ -1.31
SYNE1-215	ENST00000460912	KIR3DL3	Q8N743	410 aa		6.88	□□□□□ -1.31
SYNE1-215	ENST00000460912	STXBP6	Q8NFX7	210 aa		6.88	□□□□□ -1.31
SYNE1-215	ENST00000460912	OR8B3	Q8NGG8	313 aa		6.88	□□□□□ -1.31
SYNE1-215	ENST00000460912	OR8B2	Q96RD0	313 aa		6.88	□□□□□ -1.31
SYNE1-215	ENST00000460912	GCN1	Q92616	2671 aa	Known RBP	6.88	□□□□□ -1.31
SYNE1-215	ENST00000460912	FAM90A27P	A6NNH2	459 aa		6.87	□□□□□ -1.31
SYNE1-215	ENST00000460912	NPIPB5	A8MRT5	1133 aa		6.87	□□□□□ -1.31
SYNE1-215	ENST00000460912	ZNF324	O75467	553 aa	Predicted RBP	6.87	□□□□□ -1.31
SYNE1-215	ENST00000460912	PMCH	P20382	165 aa		6.87	□□□□□ -1.31
SYNE1-215	ENST00000460912	LINC01546	A6NGU7	62 aa		6.87	□□□□□ -1.31
SYNE1-215	ENST00000460912		M0R1W7	72 aa		6.87	□□□□□ -1.31
SYNE1-215	ENST00000460912	MGST1	P10620	155 aa	Known RBP	6.87	□□□□□ -1.31
SYNE1-215	ENST00000460912	SUB1	P53999	127 aa	Known RBP eCLIP	6.87	□□□□□ -1.31
SYNE1-215	ENST00000460912	BCL6B	Q8N143	479 aa	Predicted RBP	6.87	□□□□□ -1.31
SYNE1-215	ENST00000460912	TMEM75	Q8N9X5	138 aa		6.87	□□□□□ -1.31
SYNE1-215	ENST00000460912	PERP	Q96FX8	193 aa		6.87	□□□□□ -1.31
SYNE1-215	ENST00000460912	SHANK2-AS3	Q9BTD1	123 aa		6.87	□□□□□ -1.31
SYNE1-215	ENST00000460912	DOPEY1	Q5JWR5	2465 aa		6.87	□□□□□ -1.31
SYNE1-215	ENST00000460912	RPL27A	P46776	148 aa	Known RBP	6.87	□□□□□ -1.31
SYNE1-215	ENST00000460912	TPPP2	P59282	170 aa		6.87	□□□□□ -1.31
SYNE1-215	ENST00000460912	PRR31	Q5SQ13	230 aa		6.87	□□□□□ -1.31

Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms