RNA–Protein interactions for RNA: ENST00000457055.1

VPS41-209, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 465 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-209ENST00000457055 MEIS3Q99687 375 aa4.18□□□□□ -1.74
VPS41-209ENST00000457055 AGPAT4-IT1Q9H0P7 198 aa4.18□□□□□ -1.74
VPS41-209ENST00000457055 DEPPQ9NTK1 212 aa4.18□□□□□ -1.74
VPS41-209ENST00000457055 TXNL4BQ9NX01 149 aaKnown RBP4.18□□□□□ -1.74
VPS41-209ENST00000457055 NDUFB11Q9NX14 153 aa4.18□□□□□ -1.74
VPS41-209ENST00000457055 OCIAD1Q9NX40 245 aa4.18□□□□□ -1.74
VPS41-209ENST00000457055 TAAR3PQ9P1P4 343 aa4.18□□□□□ -1.74
VPS41-209ENST00000457055 HES2Q9Y543 173 aa4.18□□□□□ -1.74
VPS41-209ENST00000457055 SPCS1Q9Y6A9 102 aa4.18□□□□□ -1.74
VPS41-209ENST00000457055 SELENOKQ9Y6D0 94 aa4.18□□□□□ -1.74
VPS41-209ENST00000457055 TNRC6AQ8NDV7 1962 aaKnown RBP4.18□□□□□ -1.74
VPS41-209ENST00000457055 TRAV12-2A0A075B6T6 113 aa4.17□□□□□ -1.74
VPS41-209ENST00000457055 IGHV1OR21-1A0A087WYE8 117 aa4.17□□□□□ -1.74
VPS41-209ENST00000457055 SMIM26A0A096LP01 95 aa4.17□□□□□ -1.74
VPS41-209ENST00000457055 IGLV1-36A0A0B4J1U3 117 aa4.17□□□□□ -1.74
VPS41-209ENST00000457055 IGHV3OR16-9A0A0B4J2B5 98 aa4.17□□□□□ -1.74
VPS41-209ENST00000457055 KANTRA0A1W2PQU2 76 aa4.17□□□□□ -1.74
VPS41-209ENST00000457055 hDV102S1A0JD36 115 aa4.17□□□□□ -1.74
VPS41-209ENST00000457055 NDUFC2-KCTD14E9PQ53 114 aa4.17□□□□□ -1.74
VPS41-209ENST00000457055 M0R129 80 aa4.17□□□□□ -1.74
VPS41-209ENST00000457055 ZNHIT1O43257 154 aa4.17□□□□□ -1.74
VPS41-209ENST00000457055 YPEL1O60688 119 aa4.17□□□□□ -1.74
VPS41-209ENST00000457055 CDK2AP2O75956 126 aa4.17□□□□□ -1.74
VPS41-209ENST00000457055 SLC25A5P05141 298 aaKnown RBP4.17□□□□□ -1.74
VPS41-209ENST00000457055 TPT1P13693 172 aaKnown RBP4.17□□□□□ -1.74
VPS41-209ENST00000457055 CXCL5P42830 114 aa4.17□□□□□ -1.74
VPS41-209ENST00000457055 RPL34P49207 117 aaKnown RBP4.17□□□□□ -1.74
VPS41-209ENST00000457055 P2RX1P51575 399 aa4.17□□□□□ -1.74
VPS41-209ENST00000457055 NDUFA8P51970 172 aa4.17□□□□□ -1.74
VPS41-209ENST00000457055 RPS23P62266 143 aaKnown RBP4.17□□□□□ -1.74
VPS41-209ENST00000457055 QRFPP83859 136 aa4.17□□□□□ -1.74
VPS41-209ENST00000457055 BVES-AS1Q5T3Y7 98 aa4.17□□□□□ -1.74
VPS41-209ENST00000457055 Q6ZS49 121 aa4.17□□□□□ -1.74
VPS41-209ENST00000457055 RAB42Q8N4Z0 105 aa4.17□□□□□ -1.74
VPS41-209ENST00000457055 RFLNBQ8N5W9 214 aa4.17□□□□□ -1.74
VPS41-209ENST00000457055 OR10G8Q8NGN5 311 aa4.17□□□□□ -1.74
VPS41-209ENST00000457055 OR10AG1Q8NH19 301 aa4.17□□□□□ -1.74
VPS41-209ENST00000457055 OR9G1Q8NH87 305 aa4.17□□□□□ -1.74
VPS41-209ENST00000457055 ZNF689Q96CS4 500 aaPredicted RBP4.17□□□□□ -1.74
VPS41-209ENST00000457055 FXYD5Q96DB9 178 aa4.17□□□□□ -1.74
VPS41-209ENST00000457055 C18orf12Q96KH6 178 aa4.17□□□□□ -1.74
VPS41-209ENST00000457055 YPEL2Q96QA6 119 aa4.17□□□□□ -1.74
VPS41-209ENST00000457055 TM2D3Q9BRN9 247 aa4.17□□□□□ -1.74
VPS41-209ENST00000457055 C11orf68Q9H3H3 251 aaKnown RBP4.17□□□□□ -1.74
VPS41-209ENST00000457055 SMDT1Q9H4I9 107 aa4.17□□□□□ -1.74
VPS41-209ENST00000457055 PLAC1Q9HBJ0 212 aa4.17□□□□□ -1.74
VPS41-209ENST00000457055 LINC00527Q9UJ94 153 aa4.17□□□□□ -1.74
VPS41-209ENST00000457055 URB1O60287 2271 aaKnown RBP4.17□□□□□ -1.74
VPS41-209ENST00000457055 DOPEY2Q9Y3R5 2298 aa4.17□□□□□ -1.74
VPS41-209ENST00000457055 SCN1AP35498 2009 aa4.17□□□□□ -1.74
VPS41-209ENST00000457055 CACNA1DQ01668 2161 aa4.17□□□□□ -1.74
VPS41-209ENST00000457055 LAMA1P25391 3075 aa4.16□□□□□ -1.74
VPS41-209ENST00000457055 TEX15Q9BXT5 2789 aa4.16□□□□□ -1.74
VPS41-209ENST00000457055 ASCC3Q8N3C0 2202 aaKnown RBP4.16□□□□□ -1.74
VPS41-209ENST00000457055 TRAV9-1A0A075B6T8 112 aa4.16□□□□□ -1.74
VPS41-209ENST00000457055 IGHV1-58A0A0C4DH39 117 aa4.16□□□□□ -1.74
VPS41-209ENST00000457055 FAM24AA6NFZ4 105 aa4.16□□□□□ -1.74
VPS41-209ENST00000457055 ZNF727A8MUV8 499 aa4.16□□□□□ -1.74
VPS41-209ENST00000457055 C5orf67F2Z3F1 127 aa4.16□□□□□ -1.74
VPS41-209ENST00000457055 PLA2G10O15496 165 aa4.16□□□□□ -1.74
VPS41-209ENST00000457055 SRSF10O75494 262 aaKnown RBP4.16□□□□□ -1.74
VPS41-209ENST00000457055 CST7O76096 145 aa4.16□□□□□ -1.74
VPS41-209ENST00000457055 PROSCO94903 275 aa4.16□□□□□ -1.74
VPS41-209ENST00000457055 FCGR3AP08637 254 aa4.16□□□□□ -1.74
VPS41-209ENST00000457055 SLC25A4P12235 298 aa4.16□□□□□ -1.74
VPS41-209ENST00000457055 PLA2G2AP14555 144 aa4.16□□□□□ -1.74
VPS41-209ENST00000457055 INSL3P51460 131 aa4.16□□□□□ -1.74
VPS41-209ENST00000457055 MP68P56378 58 aa4.16□□□□□ -1.74
VPS41-209ENST00000457055 ERCC8Q13216 396 aa4.16□□□□□ -1.74
VPS41-209ENST00000457055 PMCHL1Q16048 86 aa4.16□□□□□ -1.74
VPS41-209ENST00000457055 SLC25A42Q86VD7 318 aa4.16□□□□□ -1.74
VPS41-209ENST00000457055 LINC00311Q8N616 119 aa4.16□□□□□ -1.74
VPS41-209ENST00000457055 RNF182Q8N6D2 247 aa4.16□□□□□ -1.74
VPS41-209ENST00000457055 NABP1Q96AH0 204 aa4.16□□□□□ -1.74
VPS41-209ENST00000457055 C2orf50Q96LR7 162 aa4.16□□□□□ -1.74
VPS41-209ENST00000457055 AIG1Q9NVV5 245 aa4.16□□□□□ -1.74
VPS41-209ENST00000457055 V9GYH0 126 aa4.16□□□□□ -1.74
VPS41-209ENST00000457055 COL12A1Q99715 3063 aa4.15□□□□□ -1.74
VPS41-209ENST00000457055 ABCA12Q86UK0 2595 aa4.15□□□□□ -1.74
VPS41-209ENST00000457055 MYO18AQ92614 2054 aaKnown RBP4.15□□□□□ -1.74
VPS41-209ENST00000457055 DENND4CQ5VZ89 1909 aa4.15□□□□□ -1.74
VPS41-209ENST00000457055 PTPN13Q12923 2485 aa4.15□□□□□ -1.74
VPS41-209ENST00000457055 EML5Q05BV3 1969 aa4.15□□□□□ -1.74
VPS41-209ENST00000457055 IGKV1D-13A0A0B4J2D9 117 aa4.15□□□□□ -1.75
VPS41-209ENST00000457055 MUC21A0A0G2JKD1 596 aa4.15□□□□□ -1.75
VPS41-209ENST00000457055 DPRXA6NFQ7 191 aa4.15□□□□□ -1.75
VPS41-209ENST00000457055 OOSP1A8MZH6 123 aa4.15□□□□□ -1.75
VPS41-209ENST00000457055 E9PLD3 99 aa4.15□□□□□ -1.75
VPS41-209ENST00000457055 H3BMG7 143 aa4.15□□□□□ -1.75
VPS41-209ENST00000457055 CD3DP04234 171 aa4.15□□□□□ -1.75
VPS41-209ENST00000457055 IGKV1-13P0DP09 117 aa4.15□□□□□ -1.75
VPS41-209ENST00000457055 LGALS3P17931 250 aaKnown RBP4.15□□□□□ -1.75
VPS41-209ENST00000457055 CD70P32970 193 aa4.15□□□□□ -1.75
VPS41-209ENST00000457055 POLR2IP36954 125 aaKnown RBP4.15□□□□□ -1.75
VPS41-209ENST00000457055 EBI3Q14213 229 aa4.15□□□□□ -1.75
VPS41-209ENST00000457055 ZNF345Q14585 488 aa4.15□□□□□ -1.75
VPS41-209ENST00000457055 ELOBQ15370 118 aa4.15□□□□□ -1.75
VPS41-209ENST00000457055 LINC01545Q5VT33 79 aa4.15□□□□□ -1.75
VPS41-209ENST00000457055 GTSCR1Q86UQ5 136 aa4.15□□□□□ -1.75
VPS41-209ENST00000457055 DRAM1Q8N682 238 aa4.15□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms