RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 TRAV13-1A0A0B4J241 112 aa3.78□□□□□ -1.8
CCDC88A-209ENST00000456975 SYS1-DBNDD2H3BUS1 97 aa3.78□□□□□ -1.8
CCDC88A-209ENST00000456975 PAX4O43316 350 aa3.78□□□□□ -1.8
CCDC88A-209ENST00000456975 LYPD3O95274 346 aa3.78□□□□□ -1.8
CCDC88A-209ENST00000456975 HSPB1P04792 205 aaKnown RBP3.78□□□□□ -1.8
CCDC88A-209ENST00000456975 CCL1P22362 96 aa3.78□□□□□ -1.8
CCDC88A-209ENST00000456975 GNLYP22749 145 aa3.78□□□□□ -1.8
CCDC88A-209ENST00000456975 CBLN1P23435 193 aa3.78□□□□□ -1.8
CCDC88A-209ENST00000456975 FUT5Q11128 374 aa3.78□□□□□ -1.8
CCDC88A-209ENST00000456975 NMSQ5H8A3 153 aa3.78□□□□□ -1.8
CCDC88A-209ENST00000456975 OR4C11Q6IEV9 310 aa3.78□□□□□ -1.8
CCDC88A-209ENST00000456975 MORN3Q6PF18 240 aaPredicted RBP3.78□□□□□ -1.8
CCDC88A-209ENST00000456975 ACP7Q6ZNF0 438 aa3.78□□□□□ -1.8
CCDC88A-209ENST00000456975 TIFABQ6ZNK6 161 aa3.78□□□□□ -1.8
CCDC88A-209ENST00000456975 AAED1Q7RTV5 226 aa3.78□□□□□ -1.8
CCDC88A-209ENST00000456975 OR51H1Q8NH63 302 aa3.78□□□□□ -1.8
CCDC88A-209ENST00000456975 BRK1Q8WUW1 75 aa3.78□□□□□ -1.8
CCDC88A-209ENST00000456975 FGF11Q92914 225 aa3.78□□□□□ -1.8
CCDC88A-209ENST00000456975 COX14Q96I36 57 aa3.78□□□□□ -1.8
CCDC88A-209ENST00000456975 IGF2BP2-AS1Q96M15 143 aa3.78□□□□□ -1.8
CCDC88A-209ENST00000456975 RBM12B-AS1Q9P1G2 102 aa3.78□□□□□ -1.8
CCDC88A-209ENST00000456975 PRO0461Q9UI25 63 aa3.78□□□□□ -1.8
CCDC88A-209ENST00000456975 OARD1Q9Y530 152 aa3.78□□□□□ -1.8
CCDC88A-209ENST00000456975 LRRK1Q38SD2 2015 aa3.77□□□□□ -1.81
CCDC88A-209ENST00000456975 TRPM6Q9BX84 2022 aa3.77□□□□□ -1.81
CCDC88A-209ENST00000456975 ATMQ13315 3056 aa3.77□□□□□ -1.81
CCDC88A-209ENST00000456975 DOCK9Q9BZ29 2069 aa3.77□□□□□ -1.81
CCDC88A-209ENST00000456975 KNCNA6PVL3 124 aa3.77□□□□□ -1.81
CCDC88A-209ENST00000456975 H3BMG7 143 aa3.77□□□□□ -1.81
CCDC88A-209ENST00000456975 K7ESM1 405 aa3.77□□□□□ -1.81
CCDC88A-209ENST00000456975 MRPS12O15235 138 aaKnown RBP3.77□□□□□ -1.81
CCDC88A-209ENST00000456975 PIRTP0C851 137 aa3.77□□□□□ -1.81
CCDC88A-209ENST00000456975 CA7P43166 264 aa3.77□□□□□ -1.81
CCDC88A-209ENST00000456975 RTL8BQ17RB0 113 aa3.77□□□□□ -1.81
CCDC88A-209ENST00000456975 HES3Q5TGS1 186 aa3.77□□□□□ -1.81
CCDC88A-209ENST00000456975 IGFL4Q6B9Z1 124 aa3.77□□□□□ -1.81
CCDC88A-209ENST00000456975 COX8CQ7Z4L0 72 aa3.77□□□□□ -1.81
CCDC88A-209ENST00000456975 PCP2Q8IVA1 136 aa3.77□□□□□ -1.81
CCDC88A-209ENST00000456975 ODF3L1Q8IXM7 274 aa3.77□□□□□ -1.81
CCDC88A-209ENST00000456975 WFDC11Q8NEX6 87 aa3.77□□□□□ -1.81
CCDC88A-209ENST00000456975 FAM213BQ8TBF2 198 aa3.77□□□□□ -1.81
CCDC88A-209ENST00000456975 AQP3Q92482 292 aa3.77□□□□□ -1.81
CCDC88A-209ENST00000456975 CHCHD5Q9BSY4 110 aa3.77□□□□□ -1.81
CCDC88A-209ENST00000456975 RTL8AQ9BWD3 113 aa3.77□□□□□ -1.81
CCDC88A-209ENST00000456975 AGPAT4-IT1Q9H0P7 198 aa3.77□□□□□ -1.81
CCDC88A-209ENST00000456975 CST11Q9H112 138 aa3.77□□□□□ -1.81
CCDC88A-209ENST00000456975 C16orf95Q9H693 158 aa3.77□□□□□ -1.81
CCDC88A-209ENST00000456975 NAA60Q9H7X0 242 aa3.77□□□□□ -1.81
CCDC88A-209ENST00000456975 RABAC1Q9UI14 185 aa3.77□□□□□ -1.81
CCDC88A-209ENST00000456975 AMMECR1Q9Y4X0 333 aaPredicted RBP3.77□□□□□ -1.81
CCDC88A-209ENST00000456975 CABIN1Q9Y6J0 2220 aa3.77□□□□□ -1.81
CCDC88A-209ENST00000456975 C3orf85A0A1B0GTC6 90 aa3.76□□□□□ -1.81
CCDC88A-209ENST00000456975 TEX50A0A1B0GTY4 177 aa3.76□□□□□ -1.81
CCDC88A-209ENST00000456975 RBAKDNA6NC62 111 aa3.76□□□□□ -1.81
CCDC88A-209ENST00000456975 C8orf87E5RJ46 101 aa3.76□□□□□ -1.81
CCDC88A-209ENST00000456975 TRACP01848 142 aa3.76□□□□□ -1.81
CCDC88A-209ENST00000456975 SFTPDP35247 375 aa3.76□□□□□ -1.81
CCDC88A-209ENST00000456975 CLDN17P56750 224 aa3.76□□□□□ -1.81
CCDC88A-209ENST00000456975 Q56UQ5 140 aa3.76□□□□□ -1.81
CCDC88A-209ENST00000456975 ZNF493Q6ZR52 646 aa3.76□□□□□ -1.81
CCDC88A-209ENST00000456975 CYB561D1Q8N8Q1 229 aa3.76□□□□□ -1.81
CCDC88A-209ENST00000456975 PPP1R1CQ8WVI7 109 aa3.76□□□□□ -1.81
CCDC88A-209ENST00000456975 GTSF1Q8WW33 167 aa3.76□□□□□ -1.81
CCDC88A-209ENST00000456975 NABP1Q96AH0 204 aa3.76□□□□□ -1.81
CCDC88A-209ENST00000456975 ZNF799Q96GE5 643 aa3.76□□□□□ -1.81
CCDC88A-209ENST00000456975 GPX7Q96SL4 187 aaPredicted RBP3.76□□□□□ -1.81
CCDC88A-209ENST00000456975 PMCHL2Q9BQD1 86 aa3.76□□□□□ -1.81
CCDC88A-209ENST00000456975 AICDAQ9GZX7 198 aa3.76□□□□□ -1.81
CCDC88A-209ENST00000456975 TP53TG3Q9ULZ0 132 aa3.76□□□□□ -1.81
CCDC88A-209ENST00000456975 PXMP4Q9Y6I8 212 aa3.76□□□□□ -1.81
CCDC88A-209ENST00000456975 KNTC1P50748 2209 aa3.76□□□□□ -1.81
CCDC88A-209ENST00000456975 MYO9AB2RTY4 2548 aa3.76□□□□□ -1.81
CCDC88A-209ENST00000456975 PLAC8L1A1L4L8 177 aa3.76□□□□□ -1.81
CCDC88A-209ENST00000456975 LYRM9A8MSI8 78 aa3.76□□□□□ -1.81
CCDC88A-209ENST00000456975 EPM2AB3EWF7 344 aa3.76□□□□□ -1.81
CCDC88A-209ENST00000456975 IGHG2P01859 326 aa3.76□□□□□ -1.81
CCDC88A-209ENST00000456975 RBP4P02753 201 aa3.76□□□□□ -1.81
CCDC88A-209ENST00000456975 SRP19P09132 144 aaKnown RBP3.76□□□□□ -1.81
CCDC88A-209ENST00000456975 ZNF688P0C7X2 276 aa3.76□□□□□ -1.81
CCDC88A-209ENST00000456975 C3orf79P0CE67 100 aa3.76□□□□□ -1.81
CCDC88A-209ENST00000456975 PIPP12273 146 aaPredicted RBP3.76□□□□□ -1.81
CCDC88A-209ENST00000456975 CRYGSP22914 178 aa3.76□□□□□ -1.81
CCDC88A-209ENST00000456975 DAPP51397 102 aa3.76□□□□□ -1.81
CCDC88A-209ENST00000456975 SUB1P53999 127 aaKnown RBP eCLIP3.76□□□□□ -1.81
CCDC88A-209ENST00000456975 CAV3P56539 151 aa3.76□□□□□ -1.81
CCDC88A-209ENST00000456975 SEC61BP60468 96 aaKnown RBP3.76□□□□□ -1.81
CCDC88A-209ENST00000456975 MRPL2Q5T653 305 aaKnown RBP3.76□□□□□ -1.81
CCDC88A-209ENST00000456975 TMEM207Q6UWW9 146 aa3.76□□□□□ -1.81
CCDC88A-209ENST00000456975 TMEM179BQ7Z7N9 219 aa3.76□□□□□ -1.81
CCDC88A-209ENST00000456975 TRAPPC6BQ86SZ2 158 aa3.76□□□□□ -1.81
CCDC88A-209ENST00000456975 NR2C2APQ86WQ0 139 aa3.76□□□□□ -1.81
CCDC88A-209ENST00000456975 LY6G5BQ8NDX9 201 aa3.76□□□□□ -1.81
CCDC88A-209ENST00000456975 OR9G1Q8NH87 305 aa3.76□□□□□ -1.81
CCDC88A-209ENST00000456975 STAG3L4Q8TBR4 150 aa3.76□□□□□ -1.81
CCDC88A-209ENST00000456975 SMIM4Q8WVI0 70 aa3.76□□□□□ -1.81
CCDC88A-209ENST00000456975 PPDPFLQ8WWR9 84 aa3.76□□□□□ -1.81
CCDC88A-209ENST00000456975 LSM10Q969L4 123 aaKnown RBP3.76□□□□□ -1.81
CCDC88A-209ENST00000456975 MRPL24Q96A35 216 aaKnown RBP3.76□□□□□ -1.81
CCDC88A-209ENST00000456975 SPACA5Q96QH8 159 aa3.76□□□□□ -1.81
CCDC88A-209ENST00000456975 POLR2J2Q9GZM3 115 aaKnown RBP3.76□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms