RNA–Protein interactions for RNA: ENST00000444040.6

SHQ1-202, Transcript of SHQ1, H/ACA ribonucleoprotein assembly factor, humanhuman

TSL 2

Gene SHQ1, Length 2,844 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHQ1-202ENST00000444040 GFRA4Q9GZZ7 299 aa12.62□□□□□ -0.39
SHQ1-202ENST00000444040 A0A1W2PRD5 423 aa12.61□□□□□ -0.39
SHQ1-202ENST00000444040 A0A1W2PRF3 423 aa12.61□□□□□ -0.39
SHQ1-202ENST00000444040 A0A1W2PRM7 423 aa12.61□□□□□ -0.39
SHQ1-202ENST00000444040 MRPS12O15235 138 aaKnown RBP12.61□□□□□ -0.39
SHQ1-202ENST00000444040 C3orf79P0CE67 100 aa12.61□□□□□ -0.39
SHQ1-202ENST00000444040 GOLT1AQ6ZVE7 132 aa12.61□□□□□ -0.39
SHQ1-202ENST00000444040 CIARTQ8N365 385 aaPredicted RBP12.61□□□□□ -0.39
SHQ1-202ENST00000444040 FANCD2OSQ96PS1 177 aa12.61□□□□□ -0.39
SHQ1-202ENST00000444040 MIEN1Q9BRT3 115 aa12.61□□□□□ -0.39
SHQ1-202ENST00000444040 TRBV6-1A0A0K0K1D8 114 aa12.61□□□□□ -0.39
SHQ1-202ENST00000444040 ZNF785A8K8V0 405 aa12.61□□□□□ -0.39
SHQ1-202ENST00000444040 RNF125Q96EQ8 232 aa12.61□□□□□ -0.39
SHQ1-202ENST00000444040 SOX21Q9Y651 276 aaPredicted RBP12.61□□□□□ -0.39
SHQ1-202ENST00000444040 SPTA1P02549 2419 aa12.61□□□□□ -0.39
SHQ1-202ENST00000444040 WI2-2373I1.2A0A1W2PRP0 233 aa12.61□□□□□ -0.39
SHQ1-202ENST00000444040 M0R143 59 aa12.61□□□□□ -0.39
SHQ1-202ENST00000444040 HES1Q14469 280 aa12.61□□□□□ -0.39
SHQ1-202ENST00000444040 C16orf54Q6UWD8 224 aa12.61□□□□□ -0.39
SHQ1-202ENST00000444040 SIGLEC15Q6ZMC9 328 aa12.61□□□□□ -0.39
SHQ1-202ENST00000444040 DYNAPQ8N1N2 210 aa12.61□□□□□ -0.39
SHQ1-202ENST00000444040 OR2D3Q8NGH3 330 aa12.61□□□□□ -0.39
SHQ1-202ENST00000444040 DAZAP1Q96EP5 407 aaKnown RBP12.61□□□□□ -0.39
SHQ1-202ENST00000444040 IGLV11-55A0A075B6I3 123 aa12.6□□□□□ -0.39
SHQ1-202ENST00000444040 FAM231BA6NCW3 169 aa12.6□□□□□ -0.39
SHQ1-202ENST00000444040 TOX4O94842 621 aa12.6□□□□□ -0.39
SHQ1-202ENST00000444040 IL4P05112 153 aa12.6□□□□□ -0.39
SHQ1-202ENST00000444040 NPIPB5A8MRT5 1133 aa12.6□□□□□ -0.39
SHQ1-202ENST00000444040 SSTP61278 116 aa12.6□□□□□ -0.39
SHQ1-202ENST00000444040 ZNF562Q6V9R5 426 aa12.6□□□□□ -0.39
SHQ1-202ENST00000444040 ZNF705AQ6ZN79 300 aaPredicted RBP12.6□□□□□ -0.39
SHQ1-202ENST00000444040 C1orf122Q6ZSJ8 110 aa12.6□□□□□ -0.39
SHQ1-202ENST00000444040 PRNTQ86SH4 94 aa12.6□□□□□ -0.39
SHQ1-202ENST00000444040 DTX2Q86UW9 622 aa12.6□□□□□ -0.39
SHQ1-202ENST00000444040 OR4F17Q8NGA8 305 aa12.6□□□□□ -0.39
SHQ1-202ENST00000444040 PGLYRP4Q96LB8 373 aa12.6□□□□□ -0.39
SHQ1-202ENST00000444040 RNF24Q9Y225 148 aa12.6□□□□□ -0.39
SHQ1-202ENST00000444040 S4R3C0 116 aa12.6□□□□□ -0.39
SHQ1-202ENST00000444040 NTF3P20783 257 aa12.59□□□□□ -0.39
SHQ1-202ENST00000444040 CTRLP40313 264 aa12.59□□□□□ -0.39
SHQ1-202ENST00000444040 NUTF2P61970 127 aaKnown RBP12.59□□□□□ -0.39
SHQ1-202ENST00000444040 NDPQ00604 133 aa12.59□□□□□ -0.39
SHQ1-202ENST00000444040 PRR31Q5SQ13 230 aa12.59□□□□□ -0.39
SHQ1-202ENST00000444040 RBPMS2Q6ZRY4 209 aaKnown RBP12.59□□□□□ -0.39
SHQ1-202ENST00000444040 OR4B1Q8NGF8 309 aa12.59□□□□□ -0.39
SHQ1-202ENST00000444040 TMEM190Q8WZ59 177 aa12.59□□□□□ -0.39
SHQ1-202ENST00000444040 F8W735 103 aaPredicted RBP12.59□□□□□ -0.39
SHQ1-202ENST00000444040 OVOL3O00110 214 aa12.59□□□□□ -0.39
SHQ1-202ENST00000444040 BCL6BQ8N143 479 aaPredicted RBP12.59□□□□□ -0.39
SHQ1-202ENST00000444040 LYPD1Q8N2G4 141 aa12.59□□□□□ -0.39
SHQ1-202ENST00000444040 Q8N6K4 173 aa12.59□□□□□ -0.39
SHQ1-202ENST00000444040 URB1-AS1Q96HZ7 61 aa12.59□□□□□ -0.39
SHQ1-202ENST00000444040 HRNRQ86YZ3 2850 aaPredicted RBP12.58□□□□□ -0.39
SHQ1-202ENST00000444040 A0A1W2PPR1 153 aa12.58□□□□□ -0.4
SHQ1-202ENST00000444040 HLA-DRB1P01911 266 aa12.58□□□□□ -0.4
SHQ1-202ENST00000444040 COL8A1P27658 744 aa12.58□□□□□ -0.4
SHQ1-202ENST00000444040 VMO1Q7Z5L0 202 aa12.58□□□□□ -0.4
SHQ1-202ENST00000444040 TMEM75Q8N9X5 138 aa12.58□□□□□ -0.4
SHQ1-202ENST00000444040 ZNF414Q96IQ9 312 aa12.58□□□□□ -0.4
SHQ1-202ENST00000444040 ZNF48Q96MX3 618 aaPredicted RBP12.58□□□□□ -0.4
SHQ1-202ENST00000444040 HSBP1O75506 76 aa12.58□□□□□ -0.4
SHQ1-202ENST00000444040 TTC9CQ8N5M4 171 aa12.58□□□□□ -0.4
SHQ1-202ENST00000444040 COL25A1Q9BXS0 654 aaPredicted RBP12.58□□□□□ -0.4
SHQ1-202ENST00000444040 TRAV30A0A087WSZ9 112 aa12.57□□□□□ -0.4
SHQ1-202ENST00000444040 GNG7O60262 68 aa12.57□□□□□ -0.4
SHQ1-202ENST00000444040 APOHP02749 345 aaPredicted RBP12.57□□□□□ -0.4
SHQ1-202ENST00000444040 ZFP36P26651 326 aaKnown RBP12.57□□□□□ -0.4
SHQ1-202ENST00000444040 FCGR2BP31994 310 aaPredicted RBP12.57□□□□□ -0.4
SHQ1-202ENST00000444040 EBI3Q14213 229 aa12.57□□□□□ -0.4
SHQ1-202ENST00000444040 ARPC1AQ92747 370 aa12.57□□□□□ -0.4
SHQ1-202ENST00000444040 IGF2RP11717 2491 aa12.57□□□□□ -0.4
SHQ1-202ENST00000444040 FOXA3P55318 350 aaPredicted RBP12.57□□□□□ -0.4
SHQ1-202ENST00000444040 CCDC144NLQ6NUI1 221 aa12.57□□□□□ -0.4
SHQ1-202ENST00000444040 MRPL52Q86TS9 123 aaKnown RBP12.57□□□□□ -0.4
SHQ1-202ENST00000444040 KIR3DL3Q8N743 410 aa12.57□□□□□ -0.4
SHQ1-202ENST00000444040 BORCS7Q96B45 105 aa12.57□□□□□ -0.4
SHQ1-202ENST00000444040 ZC2HC1AQ96GY0 325 aa12.57□□□□□ -0.4
SHQ1-202ENST00000444040 MFAP4P55083 255 aa12.57□□□□□ -0.4
SHQ1-202ENST00000444040 OOSP1A8MZH6 123 aa12.56□□□□□ -0.4
SHQ1-202ENST00000444040 ZFP30Q9Y2G7 519 aa12.56□□□□□ -0.4
SHQ1-202ENST00000444040 RNASEKQ6P5S7 137 aaKnown RBP12.56□□□□□ -0.4
SHQ1-202ENST00000444040 FAM181BA6NEQ2 426 aa12.55□□□□□ -0.4
SHQ1-202ENST00000444040 NCBP2LA6PVI3 153 aaKnown RBP12.55□□□□□ -0.4
SHQ1-202ENST00000444040 M0R2Z0 102 aa12.55□□□□□ -0.4
SHQ1-202ENST00000444040 PSG3Q16557 428 aa12.55□□□□□ -0.4
SHQ1-202ENST00000444040 MINOS1Q5TGZ0 78 aa12.55□□□□□ -0.4
SHQ1-202ENST00000444040 EBLN2Q6P2I7 272 aa12.55□□□□□ -0.4
SHQ1-202ENST00000444040 PSG8Q9UQ74 426 aa12.55□□□□□ -0.4
SHQ1-202ENST00000444040 MINOS1-NBL1R4GNA1 71 aa12.55□□□□□ -0.4
SHQ1-202ENST00000444040 HAX1O00165 279 aa12.55□□□□□ -0.4
SHQ1-202ENST00000444040 NDUFS7O75251 213 aa12.55□□□□□ -0.4
SHQ1-202ENST00000444040 SPATA45Q537H7 98 aa12.55□□□□□ -0.4
SHQ1-202ENST00000444040 ASCL2Q99929 193 aa12.55□□□□□ -0.4
SHQ1-202ENST00000444040 M0R3E3 92 aa12.54□□□□□ -0.4
SHQ1-202ENST00000444040 PRB4P10163 310 aaPredicted RBP12.54□□□□□ -0.4
SHQ1-202ENST00000444040 C21orf62Q9NYP8 219 aa12.54□□□□□ -0.4
SHQ1-202ENST00000444040 C2orf70A6NJV1 201 aa12.54□□□□□ -0.4
SHQ1-202ENST00000444040 NDUFB8O95169 186 aa12.54□□□□□ -0.4
SHQ1-202ENST00000444040 EGR2P11161 476 aaPredicted RBP12.54□□□□□ -0.4
SHQ1-202ENST00000444040 CRIP1P50238 77 aa12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms