RNA–Protein interactions for RNA: ENST00000409766.7

USP39-204, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,033 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-204ENST00000409766 VN1R17PQ8TDU5 208 aa15.73■□□□□ 0.11
USP39-204ENST00000409766 PACRGQ96M98 296 aaPredicted RBP15.73■□□□□ 0.11
USP39-204ENST00000409766 C17orf77Q96MU5 243 aa15.73■□□□□ 0.11
USP39-204ENST00000409766 GNB1LQ9BYB4 327 aa15.73■□□□□ 0.11
USP39-204ENST00000409766 MRPL18Q9H0U6 180 aaKnown RBP15.73■□□□□ 0.11
USP39-204ENST00000409766 TRBV9A0A0B4J1U6 114 aa15.72■□□□□ 0.11
USP39-204ENST00000409766 AMBPP02760 352 aa15.72■□□□□ 0.11
USP39-204ENST00000409766 RPL19P84098 196 aaKnown RBP15.72■□□□□ 0.11
USP39-204ENST00000409766 TRAV40A0A0B4J280 105 aa15.72■□□□□ 0.11
USP39-204ENST00000409766 LINC01548A6NM66 108 aa15.72■□□□□ 0.11
USP39-204ENST00000409766 GATCO43716 136 aaKnown RBP15.72■□□□□ 0.11
USP39-204ENST00000409766 S100A12P80511 92 aa15.72■□□□□ 0.11
USP39-204ENST00000409766 PRR27Q6MZM9 219 aa15.72■□□□□ 0.11
USP39-204ENST00000409766 PIFOQ8TCI5 191 aa15.72■□□□□ 0.11
USP39-204ENST00000409766 TMEM190Q8WZ59 177 aa15.72■□□□□ 0.11
USP39-204ENST00000409766 SH2D7A6NKC9 451 aaPredicted RBP15.71■□□□□ 0.11
USP39-204ENST00000409766 SPINK4O60575 86 aa15.71■□□□□ 0.11
USP39-204ENST00000409766 BRD3OSQ6XYD6 125 aa15.71■□□□□ 0.11
USP39-204ENST00000409766 LYPD1Q8N2G4 141 aa15.71■□□□□ 0.11
USP39-204ENST00000409766 CMTM2Q8TAZ6 248 aa15.71■□□□□ 0.11
USP39-204ENST00000409766 CHRDL1Q9BU40 450 aa15.71■□□□□ 0.11
USP39-204ENST00000409766 SNURFLB1AK76 121 aa15.7■□□□□ 0.1
USP39-204ENST00000409766 SCGB2A1O75556 95 aa15.7■□□□□ 0.1
USP39-204ENST00000409766 SLC35B1P78383 322 aa15.7■□□□□ 0.1
USP39-204ENST00000409766 C15orf32Q32M92 178 aa15.7■□□□□ 0.1
USP39-204ENST00000409766 SIGLEC15Q6ZMC9 328 aa15.7■□□□□ 0.1
USP39-204ENST00000409766 GRAMD2BQ96HH9 432 aa15.7■□□□□ 0.1
USP39-204ENST00000409766 ZNF414Q96IQ9 312 aa15.7■□□□□ 0.1
USP39-204ENST00000409766 MAP1AP78559 2803 aaPredicted RBP15.7■□□□□ 0.1
USP39-204ENST00000409766 IZUMO1RA6ND01 250 aa15.7■□□□□ 0.1
USP39-204ENST00000409766 IGLV2-11P01706 119 aa15.7■□□□□ 0.1
USP39-204ENST00000409766 TMEM219Q86XT9 240 aa15.7■□□□□ 0.1
USP39-204ENST00000409766 ZNF502Q8TBZ5 544 aa15.7■□□□□ 0.1
USP39-204ENST00000409766 MEGF9Q9H1U4 602 aa15.7■□□□□ 0.1
USP39-204ENST00000409766 G3V318 75 aa15.69■□□□□ 0.1
USP39-204ENST00000409766 RHOGP84095 191 aa15.69■□□□□ 0.1
USP39-204ENST00000409766 WDR73Q6P4I2 378 aa15.69■□□□□ 0.1
USP39-204ENST00000409766 UBR5O95071 2799 aaPredicted RBP15.69■□□□□ 0.1
USP39-204ENST00000409766 MT-ND6P03923 174 aa15.68■□□□□ 0.1
USP39-204ENST00000409766 MSMBP08118 114 aa15.68■□□□□ 0.1
USP39-204ENST00000409766 IGHV4-38-2P0DP08 117 aa15.68■□□□□ 0.1
USP39-204ENST00000409766 SRSF1Q07955 248 aaKnown RBP eCLIP15.68■□□□□ 0.13e-6■■■■■ 29.6
USP39-204ENST00000409766 COX19Q49B96 90 aa15.68■□□□□ 0.1
USP39-204ENST00000409766 LINC00322Q6ZN03 302 aaPredicted RBP15.68■□□□□ 0.1
USP39-204ENST00000409766 TMEM136Q6ZRR5 245 aa15.68■□□□□ 0.1
USP39-204ENST00000409766 GOLT1AQ6ZVE7 132 aa15.68■□□□□ 0.1
USP39-204ENST00000409766 Q86TA4 180 aa15.68■□□□□ 0.1
USP39-204ENST00000409766 GSN-AS1Q9NRJ2 163 aa15.68■□□□□ 0.1
USP39-204ENST00000409766 MOB4Q9Y3A3 225 aa15.68■□□□□ 0.1
USP39-204ENST00000409766 TRAV8-1A0A0A6YYK1 113 aa15.68■□□□□ 0.1
USP39-204ENST00000409766 AMY1AP04745 511 aa15.68■□□□□ 0.1
USP39-204ENST00000409766 NRGNQ92686 78 aa15.68■□□□□ 0.1
USP39-204ENST00000409766 PDE6HQ13956 83 aa15.67■□□□□ 0.1
USP39-204ENST00000409766 GBGT1Q8N5D6 347 aa15.67■□□□□ 0.1
USP39-204ENST00000409766 TSKUQ8WUA8 353 aa15.67■□□□□ 0.1
USP39-204ENST00000409766 PRSS22Q9GZN4 317 aa15.67■□□□□ 0.1
USP39-204ENST00000409766 TRBV6-1A0A0K0K1D8 114 aa15.67■□□□□ 0.1
USP39-204ENST00000409766 A0A1B0GUS0 222 aa15.67■□□□□ 0.1
USP39-204ENST00000409766 C19orf71A6NCJ1 209 aa15.67■□□□□ 0.1
USP39-204ENST00000409766 CDPF1Q6NVV7 123 aa15.67■□□□□ 0.1
USP39-204ENST00000409766 MRPL54Q6P161 138 aaKnown RBP15.67■□□□□ 0.1
USP39-204ENST00000409766 TMEM256Q8N2U0 113 aa15.67■□□□□ 0.1
USP39-204ENST00000409766 ZNF492Q9P255 531 aa15.67■□□□□ 0.1
USP39-204ENST00000409766 NAT8BQ9UHF3 227 aa15.67■□□□□ 0.1
USP39-204ENST00000409766 GRIFINA4D1Z8 144 aa15.66■□□□□ 0.1
USP39-204ENST00000409766 PAX1P15863 534 aa15.66■□□□□ 0.1
USP39-204ENST00000409766 GPR183P32249 361 aa15.66■□□□□ 0.1
USP39-204ENST00000409766 NUP35Q8NFH5 326 aa15.66■□□□□ 0.1
USP39-204ENST00000409766 RABAC1Q9UI14 185 aa15.65■□□□□ 0.1
USP39-204ENST00000409766 CLEC3BP05452 202 aa15.65■□□□□ 0.1
USP39-204ENST00000409766 CRISP2P16562 243 aa15.65■□□□□ 0.1
USP39-204ENST00000409766 DSCR9P59020 149 aa15.65■□□□□ 0.1
USP39-204ENST00000409766 TMEM75Q8N9X5 138 aa15.65■□□□□ 0.1
USP39-204ENST00000409766 TMEM18Q96B42 140 aa15.65■□□□□ 0.1
USP39-204ENST00000409766 NEU1Q99519 415 aa15.65■□□□□ 0.1
USP39-204ENST00000409766 RPP21Q9H633 154 aaKnown RBP15.65■□□□□ 0.1
USP39-204ENST00000409766 TP53TG3Q9ULZ0 132 aa15.65■□□□□ 0.1
USP39-204ENST00000409766 RPL7P18124 248 aaKnown RBP15.64■□□□□ 0.09
USP39-204ENST00000409766 C19orf54Q5BKX5 351 aa15.64■□□□□ 0.09
USP39-204ENST00000409766 RASL11AQ6T310 242 aa15.64■□□□□ 0.09
USP39-204ENST00000409766 PRNTQ86SH4 94 aa15.64■□□□□ 0.09
USP39-204ENST00000409766 WIPF2Q8TF74 440 aaPredicted RBP15.64■□□□□ 0.09
USP39-204ENST00000409766 CCDC140Q96MF4 163 aa15.64■□□□□ 0.09
USP39-204ENST00000409766 SOX21Q9Y651 276 aaPredicted RBP15.64■□□□□ 0.09
USP39-204ENST00000409766 HIGD1CA8MV81 97 aa15.63■□□□□ 0.09
USP39-204ENST00000409766 BMPR1BO00238 502 aa15.63■□□□□ 0.09
USP39-204ENST00000409766 NUPR1O60356 82 aa15.63■□□□□ 0.09
USP39-204ENST00000409766 HLA-DQA1P01909 254 aa15.63■□□□□ 0.09
USP39-204ENST00000409766 CT83Q5H943 113 aa15.63■□□□□ 0.09
USP39-204ENST00000409766 DNLZQ5SXM8 178 aa15.63■□□□□ 0.09
USP39-204ENST00000409766 CIARTQ8N365 385 aaPredicted RBP15.63■□□□□ 0.09
USP39-204ENST00000409766 CSMD2Q7Z408 3487 aa15.63■□□□□ 0.09
USP39-204ENST00000409766 IGHV3-35A0A0C4DH35 117 aa15.63■□□□□ 0.09
USP39-204ENST00000409766 B4DSR2 109 aa15.63■□□□□ 0.09
USP39-204ENST00000409766 DIRC3C9JPN6 131 aa15.63■□□□□ 0.09
USP39-204ENST00000409766 P01737 135 aa15.63■□□□□ 0.09
USP39-204ENST00000409766 CRIP2P52943 208 aaPredicted RBP15.63■□□□□ 0.09
USP39-204ENST00000409766 RAB4BP61018 213 aa15.63■□□□□ 0.09
USP39-204ENST00000409766 TOMM20LQ6UXN7 152 aa15.63■□□□□ 0.09
USP39-204ENST00000409766 ZFAND3Q9H8U3 227 aa15.63■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms