RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 COA6Q5JTJ3 125 aaKnown RBP9.74□□□□□ -0.85
HMGB1-206ENST00000405805 ONECUT1Q9UBC0 465 aa9.74□□□□□ -0.85
HMGB1-206ENST00000405805 K7EN84 100 aa9.74□□□□□ -0.85
HMGB1-206ENST00000405805 M0R3E3 92 aa9.74□□□□□ -0.85
HMGB1-206ENST00000405805 TAX1BP3O14907 124 aa9.74□□□□□ -0.85
HMGB1-206ENST00000405805 FOXC1Q12948 553 aa9.74□□□□□ -0.85
HMGB1-206ENST00000405805 MBNL2Q5VZF2 373 aaKnown RBP9.74□□□□□ -0.85
HMGB1-206ENST00000405805 ZNF714Q96N38 554 aa9.74□□□□□ -0.85
HMGB1-206ENST00000405805 CKS2P33552 79 aa9.74□□□□□ -0.85
HMGB1-206ENST00000405805 HBBP68871 147 aa9.74□□□□□ -0.85
HMGB1-206ENST00000405805 TMEM238LA0A1B0GVL6 79 aa9.74□□□□□ -0.85
HMGB1-206ENST00000405805 AHRRA9YTQ3 701 aa9.73□□□□□ -0.85
HMGB1-206ENST00000405805 NPIPB11E5RHQ5 1161 aa9.73□□□□□ -0.85
HMGB1-206ENST00000405805 LYNX1G3V0Z9 82 aa9.73□□□□□ -0.85
HMGB1-206ENST00000405805 J3KRW8 73 aa9.73□□□□□ -0.85
HMGB1-206ENST00000405805 YPEL1O60688 119 aa9.73□□□□□ -0.85
HMGB1-206ENST00000405805 LYNX1P0DP58 116 aa9.73□□□□□ -0.85
HMGB1-206ENST00000405805 SCGB1A1P11684 91 aa9.73□□□□□ -0.85
HMGB1-206ENST00000405805 MRPL23Q16540 153 aaKnown RBP9.73□□□□□ -0.85
HMGB1-206ENST00000405805 SRSF12Q8WXF0 261 aaKnown RBP9.73□□□□□ -0.85
HMGB1-206ENST00000405805 FAM168AQ92567 244 aa9.73□□□□□ -0.85
HMGB1-206ENST00000405805 YPEL2Q96QA6 119 aa9.73□□□□□ -0.85
HMGB1-206ENST00000405805 NBEAP1P0C6P0 100 aa9.73□□□□□ -0.85
HMGB1-206ENST00000405805 VWC2Q2TAL6 325 aa9.73□□□□□ -0.85
HMGB1-206ENST00000405805 DEFB125Q8N687 156 aa9.73□□□□□ -0.85
HMGB1-206ENST00000405805 MDS2Q8NDY4 140 aa9.73□□□□□ -0.85
HMGB1-206ENST00000405805 K7ERJ3 54 aa9.73□□□□□ -0.85
HMGB1-206ENST00000405805 PEX7O00628 323 aa9.73□□□□□ -0.85
HMGB1-206ENST00000405805 TBR1Q16650 682 aa9.73□□□□□ -0.85
HMGB1-206ENST00000405805 GAGE12JA6NER3 117 aa9.72□□□□□ -0.85
HMGB1-206ENST00000405805 A6NJY4 79 aa9.72□□□□□ -0.85
HMGB1-206ENST00000405805 SRRM5B3KS81 715 aa9.72□□□□□ -0.85
HMGB1-206ENST00000405805 DLL1O00548 723 aa9.72□□□□□ -0.85
HMGB1-206ENST00000405805 GAGE7O76087 117 aa9.72□□□□□ -0.85
HMGB1-206ENST00000405805 GAGE12FP0CL80 117 aa9.72□□□□□ -0.85
HMGB1-206ENST00000405805 GAGE12GP0CL81 117 aa9.72□□□□□ -0.85
HMGB1-206ENST00000405805 GAGE12IP0CL82 117 aa9.72□□□□□ -0.85
HMGB1-206ENST00000405805 BRWD1-AS2P59051 145 aa9.72□□□□□ -0.85
HMGB1-206ENST00000405805 GAGE4Q13068 117 aa9.72□□□□□ -0.85
HMGB1-206ENST00000405805 MYOZ3Q8TDC0 251 aa9.72□□□□□ -0.85
HMGB1-206ENST00000405805 SPAG8Q99932 426 aaPredicted RBP9.72□□□□□ -0.85
HMGB1-206ENST00000405805 IGHV3OR16-13A0A075B7E8 117 aa9.72□□□□□ -0.85
HMGB1-206ENST00000405805 IGHV3-74A0A0B4J1X5 117 aa9.72□□□□□ -0.85
HMGB1-206ENST00000405805 TRGV8A0A0C4DH27 118 aa9.72□□□□□ -0.85
HMGB1-206ENST00000405805 G3V4G9 280 aa9.72□□□□□ -0.85
HMGB1-206ENST00000405805 PRSS2P07478 247 aa9.72□□□□□ -0.85
HMGB1-206ENST00000405805 OR4X2Q8NGF9 303 aa9.72□□□□□ -0.85
HMGB1-206ENST00000405805 NCOR2Q9Y618 2525 aa9.72□□□□□ -0.85
HMGB1-206ENST00000405805 LGALS4P56470 323 aa9.72□□□□□ -0.85
HMGB1-206ENST00000405805 GFRALQ6UXV0 394 aa9.72□□□□□ -0.85
HMGB1-206ENST00000405805 WDR31Q8NA23 367 aa9.72□□□□□ -0.85
HMGB1-206ENST00000405805 RNF183Q96D59 192 aa9.72□□□□□ -0.85
HMGB1-206ENST00000405805 GGTLC3B5MD39 225 aa9.71□□□□□ -0.85
HMGB1-206ENST00000405805 UPK2O00526 184 aa9.71□□□□□ -0.85
HMGB1-206ENST00000405805 RPL27AP46776 148 aaKnown RBP9.71□□□□□ -0.85
HMGB1-206ENST00000405805 KRTAP27-1Q3LI81 207 aa9.71□□□□□ -0.85
HMGB1-206ENST00000405805 PYGO2Q9BRQ0 406 aa9.71□□□□□ -0.85
HMGB1-206ENST00000405805 CACNA1AO00555 2505 aa9.71□□□□□ -0.85
HMGB1-206ENST00000405805 IZUMO1RA6ND01 250 aa9.71□□□□□ -0.85
HMGB1-206ENST00000405805 C11orf53Q8IXP5 236 aa9.71□□□□□ -0.85
HMGB1-206ENST00000405805 SLC25A33Q9BSK2 321 aa9.71□□□□□ -0.85
HMGB1-206ENST00000405805 CGB1A6NKQ9 187 aa9.71□□□□□ -0.86
HMGB1-206ENST00000405805 NPIPB5A8MRT5 1133 aa9.71□□□□□ -0.86
HMGB1-206ENST00000405805 K7EMI3 77 aa9.71□□□□□ -0.86
HMGB1-206ENST00000405805 TOMM40O96008 361 aa9.71□□□□□ -0.86
HMGB1-206ENST00000405805 IGLC1P0CG04 106 aa9.71□□□□□ -0.86
HMGB1-206ENST00000405805 RPL15P61313 204 aaKnown RBP9.71□□□□□ -0.86
HMGB1-206ENST00000405805 HERVK_113P61574 105 aa9.71□□□□□ -0.86
HMGB1-206ENST00000405805 WFDC2Q14508 124 aa9.71□□□□□ -0.86
HMGB1-206ENST00000405805 TMEM155Q4W5P6 130 aa9.71□□□□□ -0.86
HMGB1-206ENST00000405805 RASL11BQ9BPW5 248 aa9.71□□□□□ -0.86
HMGB1-206ENST00000405805 PMS2P5A8MQ11 134 aa9.71□□□□□ -0.86
HMGB1-206ENST00000405805 IGHV3-23P01764 117 aa9.71□□□□□ -0.86
HMGB1-206ENST00000405805 GLRXP35754 106 aa9.71□□□□□ -0.86
HMGB1-206ENST00000405805 CSPG4Q6UVK1 2322 aa9.7□□□□□ -0.86
HMGB1-206ENST00000405805 MUC3AQ02505 3323 aa9.7□□□□□ -0.86
HMGB1-206ENST00000405805 SRRM4A7MD48 611 aaKnown RBP9.7□□□□□ -0.86
HMGB1-206ENST00000405805 SS18L1O75177 396 aaPredicted RBP9.7□□□□□ -0.86
HMGB1-206ENST00000405805 PROP1O75360 226 aa9.7□□□□□ -0.86
HMGB1-206ENST00000405805 EVI2AP22794 236 aa9.7□□□□□ -0.86
HMGB1-206ENST00000405805 VDAC2P45880 294 aaPredicted RBP9.7□□□□□ -0.86
HMGB1-206ENST00000405805 TMUB1Q9BVT8 246 aa9.7□□□□□ -0.86
HMGB1-206ENST00000405805 FBXL15Q9H469 300 aa9.7□□□□□ -0.86
HMGB1-206ENST00000405805 A0A1W2PPM0 123 aa9.7□□□□□ -0.86
HMGB1-206ENST00000405805 FAM90A27PA6NNH2 459 aa9.7□□□□□ -0.86
HMGB1-206ENST00000405805 CD69Q07108 199 aa9.7□□□□□ -0.86
HMGB1-206ENST00000405805 OR4F17Q8NGA8 305 aa9.7□□□□□ -0.86
HMGB1-206ENST00000405805 Q8TCH9 128 aa9.7□□□□□ -0.86
HMGB1-206ENST00000405805 FOXC2Q99958 501 aa9.7□□□□□ -0.86
HMGB1-206ENST00000405805 RABAC1Q9UI14 185 aa9.7□□□□□ -0.86
HMGB1-206ENST00000405805 C2CD3Q4AC94 2353 aa9.7□□□□□ -0.86
HMGB1-206ENST00000405805 WDFY3Q8IZQ1 3526 aa9.7□□□□□ -0.86
HMGB1-206ENST00000405805 IGKV3-7A0A075B6H7 116 aa9.7□□□□□ -0.86
HMGB1-206ENST00000405805 A8MWV9 139 aa9.7□□□□□ -0.86
HMGB1-206ENST00000405805 SIVA1O15304 175 aa9.7□□□□□ -0.86
HMGB1-206ENST00000405805 OR4C13Q8NGP0 309 aa9.7□□□□□ -0.86
HMGB1-206ENST00000405805 OR11H12B2RN74 326 aa9.69□□□□□ -0.86
HMGB1-206ENST00000405805 H3BRM9 83 aa9.69□□□□□ -0.86
HMGB1-206ENST00000405805 ORM1P02763 201 aa9.69□□□□□ -0.86
HMGB1-206ENST00000405805 WT1P19544 449 aaPredicted RBP9.69□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms