RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 AMBPP02760 352 aa10.47□□□□□ -0.73
CCDC88C-204ENST00000389857 PRIMA1Q86XR5 153 aa10.47□□□□□ -0.73
CCDC88C-204ENST00000389857 TRAV8-3A0A0A6YYJ7 113 aa10.47□□□□□ -0.73
CCDC88C-204ENST00000389857 GGNQ86UU5 652 aa10.47□□□□□ -0.73
CCDC88C-204ENST00000389857 HIST3H2BBQ8N257 126 aa10.47□□□□□ -0.73
CCDC88C-204ENST00000389857 FGFBP3Q8TAT2 258 aa10.47□□□□□ -0.73
CCDC88C-204ENST00000389857 SELENOKQ9Y6D0 94 aa10.47□□□□□ -0.73
CCDC88C-204ENST00000389857 GAGE2AQ6NT46 116 aa10.47□□□□□ -0.73
CCDC88C-204ENST00000389857 UBE2E2Q96LR5 201 aa10.47□□□□□ -0.73
CCDC88C-204ENST00000389857 SNHG12Q9BXW3 62 aa10.47□□□□□ -0.73
CCDC88C-204ENST00000389857 RFNGQ9Y644 331 aa10.47□□□□□ -0.73
CCDC88C-204ENST00000389857 FREM3P0C091 2139 aa10.46□□□□□ -0.73
CCDC88C-204ENST00000389857 CT83Q5H943 113 aa10.46□□□□□ -0.73
CCDC88C-204ENST00000389857 TMEM158Q8WZ71 300 aa10.46□□□□□ -0.73
CCDC88C-204ENST00000389857 COL4A5P29400 1685 aa10.46□□□□□ -0.73
CCDC88C-204ENST00000389857 NTN3O00634 580 aaPredicted RBP10.46□□□□□ -0.73
CCDC88C-204ENST00000389857 C14orf178Q8N769 122 aaPredicted RBP10.46□□□□□ -0.73
CCDC88C-204ENST00000389857 TRAV13-1A0A0B4J241 112 aa10.46□□□□□ -0.73
CCDC88C-204ENST00000389857 H0YIZ8 118 aa10.46□□□□□ -0.73
CCDC88C-204ENST00000389857 ESDP10768 282 aa10.46□□□□□ -0.73
CCDC88C-204ENST00000389857 CD177Q8N6Q3 437 aa10.46□□□□□ -0.73
CCDC88C-204ENST00000389857 C3orf56Q8N813 242 aa10.46□□□□□ -0.73
CCDC88C-204ENST00000389857 H3BMM0 161 aa10.46□□□□□ -0.74
CCDC88C-204ENST00000389857 ZNF561-AS1K7EIQ3 104 aa10.46□□□□□ -0.74
CCDC88C-204ENST00000389857 HEATR1Q9H583 2144 aaKnown RBP10.46□□□□□ -0.74
CCDC88C-204ENST00000389857 SUMO4Q6EEV6 95 aa10.46□□□□□ -0.74
CCDC88C-204ENST00000389857 DMRTC2Q8IXT2 367 aaPredicted RBP10.46□□□□□ -0.74
CCDC88C-204ENST00000389857 CHAC1Q9BUX1 264 aa10.46□□□□□ -0.74
CCDC88C-204ENST00000389857 DAZ1Q9NQZ3 744 aaKnown RBP10.46□□□□□ -0.74
CCDC88C-204ENST00000389857 C10orf55Q5SWW7 151 aa10.45□□□□□ -0.74
CCDC88C-204ENST00000389857 LYPD3O95274 346 aa10.45□□□□□ -0.74
CCDC88C-204ENST00000389857 MRPL27Q9P0M9 148 aaKnown RBP10.45□□□□□ -0.74
CCDC88C-204ENST00000389857 FNDC10F2Z333 226 aa10.45□□□□□ -0.74
CCDC88C-204ENST00000389857 GNLYP22749 145 aa10.45□□□□□ -0.74
CCDC88C-204ENST00000389857 GAFA1Q96PS6 74 aa10.45□□□□□ -0.74
CCDC88C-204ENST00000389857 GFRA4Q9GZZ7 299 aa10.45□□□□□ -0.74
CCDC88C-204ENST00000389857 DIDO1Q9BTC0 2240 aaKnown RBP10.45□□□□□ -0.74
CCDC88C-204ENST00000389857 BRD3OSQ6XYD6 125 aa10.45□□□□□ -0.74
CCDC88C-204ENST00000389857 SIGLEC9Q9Y336 463 aa10.45□□□□□ -0.74
CCDC88C-204ENST00000389857 KMT2EQ8IZD2 1858 aa10.45□□□□□ -0.74
CCDC88C-204ENST00000389857 EREGO14944 169 aa10.45□□□□□ -0.74
CCDC88C-204ENST00000389857 FLVCR1-AS1Q8TAF5 88 aa10.45□□□□□ -0.74
CCDC88C-204ENST00000389857 FANCMQ8IYD8 2048 aa10.45□□□□□ -0.74
CCDC88C-204ENST00000389857 A0A0G2JNJ9 132 aa10.45□□□□□ -0.74
CCDC88C-204ENST00000389857 LINC01551Q86U37 167 aa10.45□□□□□ -0.74
CCDC88C-204ENST00000389857 Q9UFV3 132 aa10.45□□□□□ -0.74
CCDC88C-204ENST00000389857 IGKV1D-8A0A087WSZ0 117 aa10.44□□□□□ -0.74
CCDC88C-204ENST00000389857 SPXQ9BT56 116 aa10.44□□□□□ -0.74
CCDC88C-204ENST00000389857 ABCA7Q8IZY2 2146 aa10.44□□□□□ -0.74
CCDC88C-204ENST00000389857 CXCL1P09341 107 aa10.44□□□□□ -0.74
CCDC88C-204ENST00000389857 NEGR1Q7Z3B1 354 aa10.44□□□□□ -0.74
CCDC88C-204ENST00000389857 NABP1Q96AH0 204 aa10.44□□□□□ -0.74
CCDC88C-204ENST00000389857 RHPN1-AS1Q9BWJ2 59 aa10.44□□□□□ -0.74
CCDC88C-204ENST00000389857 NKAPP1Q8N9T2 125 aa10.44□□□□□ -0.74
CCDC88C-204ENST00000389857 ZNF625Q96I27 306 aaPredicted RBP10.44□□□□□ -0.74
CCDC88C-204ENST00000389857 CD59P13987 128 aa10.44□□□□□ -0.74
CCDC88C-204ENST00000389857 TMEM126AQ9H061 195 aa10.44□□□□□ -0.74
CCDC88C-204ENST00000389857 LIME1Q9H400 295 aa10.44□□□□□ -0.74
CCDC88C-204ENST00000389857 IGKV1-12A0A0C4DH73 117 aa10.44□□□□□ -0.74
CCDC88C-204ENST00000389857 IGKV1D-12P01611 117 aa10.44□□□□□ -0.74
CCDC88C-204ENST00000389857 PRB4P10163 310 aaPredicted RBP10.44□□□□□ -0.74
CCDC88C-204ENST00000389857 GATA3P23771 443 aa10.44□□□□□ -0.74
CCDC88C-204ENST00000389857 ZNF329Q86UD4 541 aa10.44□□□□□ -0.74
CCDC88C-204ENST00000389857 Q8TAT8 98 aa10.44□□□□□ -0.74
CCDC88C-204ENST00000389857 hDV102S1A0JD36 115 aa10.44□□□□□ -0.74
CCDC88C-204ENST00000389857 SYS1-DBNDD2H3BUS1 97 aa10.44□□□□□ -0.74
CCDC88C-204ENST00000389857 ANK1P16157 1881 aa10.43□□□□□ -0.74
CCDC88C-204ENST00000389857 PDE6HQ13956 83 aa10.43□□□□□ -0.74
CCDC88C-204ENST00000389857 C1orf194Q5T5A4 169 aa10.43□□□□□ -0.74
CCDC88C-204ENST00000389857 DEFB104AQ8WTQ1 72 aa10.43□□□□□ -0.74
CCDC88C-204ENST00000389857 VWCEQ96DN2 955 aa10.43□□□□□ -0.74
CCDC88C-204ENST00000389857 CITED2Q99967 270 aaPredicted RBP10.43□□□□□ -0.74
CCDC88C-204ENST00000389857 A0A087WWL8 130 aa10.43□□□□□ -0.74
CCDC88C-204ENST00000389857 TRBV6-6A0A0A6YYG2 114 aa10.43□□□□□ -0.74
CCDC88C-204ENST00000389857 GLRX5Q86SX6 157 aa10.43□□□□□ -0.74
CCDC88C-204ENST00000389857 A6NNC1 897 aa10.43□□□□□ -0.74
CCDC88C-204ENST00000389857 TMEM14EPQ6UXP3 125 aa10.43□□□□□ -0.74
CCDC88C-204ENST00000389857 TMEM141Q96I45 108 aa10.43□□□□□ -0.74
CCDC88C-204ENST00000389857 TRBV25-1A0A075B6N4 114 aa10.43□□□□□ -0.74
CCDC88C-204ENST00000389857 A0A087X0K7 114 aa10.43□□□□□ -0.74
CCDC88C-204ENST00000389857 DEFB130BP0DP73 79 aa10.43□□□□□ -0.74
CCDC88C-204ENST00000389857 DEFB130AP0DP74 79 aa10.43□□□□□ -0.74
CCDC88C-204ENST00000389857 TMEM75Q8N9X5 138 aa10.43□□□□□ -0.74
CCDC88C-204ENST00000389857 SPANXA1Q9NS26 97 aa10.43□□□□□ -0.74
CCDC88C-204ENST00000389857 MRPL52Q86TS9 123 aaKnown RBP10.42□□□□□ -0.74
CCDC88C-204ENST00000389857 DOCK6Q96HP0 2047 aa10.42□□□□□ -0.74
CCDC88C-204ENST00000389857 SOCS3O14543 225 aa10.42□□□□□ -0.74
CCDC88C-204ENST00000389857 KIR3DS1Q14943 382 aa10.42□□□□□ -0.74
CCDC88C-204ENST00000389857 LHFPL1Q86WI0 220 aa10.42□□□□□ -0.74
CCDC88C-204ENST00000389857 ZNF114Q8NC26 417 aa10.42□□□□□ -0.74
CCDC88C-204ENST00000389857 TRAV3A0A0B4J244 114 aa10.42□□□□□ -0.74
CCDC88C-204ENST00000389857 BMPERQ8N8U9 685 aa10.42□□□□□ -0.74
CCDC88C-204ENST00000389857 FER1L5A0AVI2 2057 aa10.42□□□□□ -0.74
CCDC88C-204ENST00000389857 IGKV1-27A0A075B6S5 117 aa10.42□□□□□ -0.74
CCDC88C-204ENST00000389857 RHODO00212 210 aa10.42□□□□□ -0.74
CCDC88C-204ENST00000389857 DAD1P61803 113 aa10.42□□□□□ -0.74
CCDC88C-204ENST00000389857 GFI1Q99684 422 aa10.42□□□□□ -0.74
CCDC88C-204ENST00000389857 GREB1LQ9C091 1923 aaPredicted RBP10.42□□□□□ -0.74
CCDC88C-204ENST00000389857 MPDZO75970 2070 aa10.41□□□□□ -0.74
CCDC88C-204ENST00000389857 SELLP14151 372 aa10.41□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 66.9 ms