RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 C17orf98A8MV24 154 aa10.45□□□□□ -0.74
COL6A3-203ENST00000353578 EFEMP2O95967 443 aa10.45□□□□□ -0.74
COL6A3-203ENST00000353578 PATE4P0C8F1 98 aa10.45□□□□□ -0.74
COL6A3-203ENST00000353578 LPAL2Q16609 132 aa10.45□□□□□ -0.74
COL6A3-203ENST00000353578 DSCR8Q96T75 97 aa10.45□□□□□ -0.74
COL6A3-203ENST00000353578 TMEM171Q8WVE6 324 aa10.45□□□□□ -0.74
COL6A3-203ENST00000353578 PHF7Q9BWX1 381 aaPredicted RBP10.45□□□□□ -0.74
COL6A3-203ENST00000353578 Q8N8P6 123 aa10.45□□□□□ -0.74
COL6A3-203ENST00000353578 HLA-DRB4P13762 266 aa10.45□□□□□ -0.74
COL6A3-203ENST00000353578 EIF4EBP2Q13542 120 aaPredicted RBP10.45□□□□□ -0.74
COL6A3-203ENST00000353578 HLA-DRB4X5D2U9 266 aa10.45□□□□□ -0.74
COL6A3-203ENST00000353578 CMC4P56277 68 aaPredicted RBP10.44□□□□□ -0.74
COL6A3-203ENST00000353578 TMEM196Q5HYL7 178 aa10.44□□□□□ -0.74
COL6A3-203ENST00000353578 A0A1W2PRD5 423 aa10.44□□□□□ -0.74
COL6A3-203ENST00000353578 A0A1W2PRF3 423 aa10.44□□□□□ -0.74
COL6A3-203ENST00000353578 A0A1W2PRM7 423 aa10.44□□□□□ -0.74
COL6A3-203ENST00000353578 CEACAM8P31997 349 aaPredicted RBP10.44□□□□□ -0.74
COL6A3-203ENST00000353578 EGR2P11161 476 aaPredicted RBP10.44□□□□□ -0.74
COL6A3-203ENST00000353578 GATD1Q8NB37 220 aa10.44□□□□□ -0.74
COL6A3-203ENST00000353578 hADV29S1A0JD25 119 aa10.44□□□□□ -0.74
COL6A3-203ENST00000353578 KLF14Q8TD94 323 aaPredicted RBP10.44□□□□□ -0.74
COL6A3-203ENST00000353578 IGLL1P15814 213 aa10.44□□□□□ -0.74
COL6A3-203ENST00000353578 MST1LQ2TV78 715 aa10.44□□□□□ -0.74
COL6A3-203ENST00000353578 CRYBA2P53672 197 aa10.44□□□□□ -0.74
COL6A3-203ENST00000353578 ATP5EP2Q5VTU8 51 aa10.44□□□□□ -0.74
COL6A3-203ENST00000353578 LINC00477Q96M19 166 aa10.44□□□□□ -0.74
COL6A3-203ENST00000353578 UQCRQO14949 82 aa10.43□□□□□ -0.74
COL6A3-203ENST00000353578 SPEM2Q0P670 501 aa10.43□□□□□ -0.74
COL6A3-203ENST00000353578 C8orf86Q6ZUL3 223 aa10.43□□□□□ -0.74
COL6A3-203ENST00000353578 TMEM158Q8WZ71 300 aa10.43□□□□□ -0.74
COL6A3-203ENST00000353578 NUP210LQ5VU65 1888 aa10.43□□□□□ -0.74
COL6A3-203ENST00000353578 FGF6P10767 208 aa10.43□□□□□ -0.74
COL6A3-203ENST00000353578 CCL7P80098 99 aa10.43□□□□□ -0.74
COL6A3-203ENST00000353578 PLAURQ03405 335 aa10.43□□□□□ -0.74
COL6A3-203ENST00000353578 CARD19Q96LW7 228 aa10.43□□□□□ -0.74
COL6A3-203ENST00000353578 CELA2BP08218 269 aaPredicted RBP10.43□□□□□ -0.74
COL6A3-203ENST00000353578 PRADC1Q9BSG0 188 aa10.43□□□□□ -0.74
COL6A3-203ENST00000353578 PAX4O43316 350 aa10.43□□□□□ -0.74
COL6A3-203ENST00000353578 IGKV1-8A0A0C4DH67 115 aa10.43□□□□□ -0.74
COL6A3-203ENST00000353578 TM4SF4P48230 202 aa10.43□□□□□ -0.74
COL6A3-203ENST00000353578 VSIG2Q96IQ7 327 aa10.43□□□□□ -0.74
COL6A3-203ENST00000353578 MRPS18CQ9Y3D5 142 aaKnown RBP10.43□□□□□ -0.74
COL6A3-203ENST00000353578 KIAA1549LQ6ZVL6 1849 aa10.43□□□□□ -0.74
COL6A3-203ENST00000353578 SPSB3Q6PJ21 355 aa10.43□□□□□ -0.74
COL6A3-203ENST00000353578 C20orf173Q96LM9 149 aa10.43□□□□□ -0.74
COL6A3-203ENST00000353578 NPIPB5A8MRT5 1133 aa10.43□□□□□ -0.74
COL6A3-203ENST00000353578 CXCL5P42830 114 aa10.43□□□□□ -0.74
COL6A3-203ENST00000353578 C11orf52Q96A22 123 aa10.43□□□□□ -0.74
COL6A3-203ENST00000353578 GAS1P54826 345 aa10.42□□□□□ -0.74
COL6A3-203ENST00000353578 GNG5P63218 68 aa10.42□□□□□ -0.74
COL6A3-203ENST00000353578 PPP1R32Q7Z5V6 425 aa10.42□□□□□ -0.74
COL6A3-203ENST00000353578 LYRM9A8MSI8 78 aa10.42□□□□□ -0.74
COL6A3-203ENST00000353578 NRTNQ99748 197 aa10.42□□□□□ -0.74
COL6A3-203ENST00000353578 IGHV3-21A0A0B4J1V1 117 aa10.42□□□□□ -0.74
COL6A3-203ENST00000353578 RNASE4P34096 147 aaKnown RBP10.42□□□□□ -0.74
COL6A3-203ENST00000353578 FAM104BQ5XKR9 115 aa10.42□□□□□ -0.74
COL6A3-203ENST00000353578 IGHV3OR15-7A0A075B7D8 119 aa10.42□□□□□ -0.74
COL6A3-203ENST00000353578 LIME1Q9H400 295 aa10.42□□□□□ -0.74
COL6A3-203ENST00000353578 TOMM7Q9P0U1 55 aa10.42□□□□□ -0.74
COL6A3-203ENST00000353578 TRAV13-1A0A0B4J241 112 aa10.42□□□□□ -0.74
COL6A3-203ENST00000353578 PDE6GP18545 87 aa10.42□□□□□ -0.74
COL6A3-203ENST00000353578 Q86TA4 180 aa10.42□□□□□ -0.74
COL6A3-203ENST00000353578 DUX3Q96PT4 197 aa10.42□□□□□ -0.74
COL6A3-203ENST00000353578 CCL13Q99616 98 aa10.42□□□□□ -0.74
COL6A3-203ENST00000353578 SMRP1Q8NCR6 262 aa10.41□□□□□ -0.74
COL6A3-203ENST00000353578 SPG11Q96JI7 2443 aa10.41□□□□□ -0.74
COL6A3-203ENST00000353578 F6UB75 175 aa10.41□□□□□ -0.74
COL6A3-203ENST00000353578 IL15RAQ13261 267 aa10.41□□□□□ -0.74
COL6A3-203ENST00000353578 APELAP0DMC3 54 aa10.41□□□□□ -0.74
COL6A3-203ENST00000353578 DUX5Q96PT3 197 aa10.41□□□□□ -0.74
COL6A3-203ENST00000353578 CENPVL1A0A0U1RR11 272 aa10.41□□□□□ -0.74
COL6A3-203ENST00000353578 TEX48A0A1B0GUV7 120 aa10.41□□□□□ -0.74
COL6A3-203ENST00000353578 H3BT86 120 aa10.41□□□□□ -0.74
COL6A3-203ENST00000353578 SMIM10L1P0DMW3 83 aa10.41□□□□□ -0.74
COL6A3-203ENST00000353578 SMIM10Q96HG1 83 aa10.41□□□□□ -0.74
COL6A3-203ENST00000353578 PYGO2Q9BRQ0 406 aa10.41□□□□□ -0.74
COL6A3-203ENST00000353578 CGB1A6NKQ9 187 aa10.41□□□□□ -0.74
COL6A3-203ENST00000353578 NDUFC1O43677 76 aa10.41□□□□□ -0.74
COL6A3-203ENST00000353578 LILRA1O75019 489 aa10.41□□□□□ -0.74
COL6A3-203ENST00000353578 IGHG2P01859 326 aa10.41□□□□□ -0.74
COL6A3-203ENST00000353578 CCL3P10147 92 aa10.41□□□□□ -0.74
COL6A3-203ENST00000353578 NAA38Q9BRA0 125 aaKnown RBP10.41□□□□□ -0.74
COL6A3-203ENST00000353578 PRRC2AP48634 2157 aaKnown RBP10.41□□□□□ -0.74
COL6A3-203ENST00000353578 FOXS1O43638 330 aa10.41□□□□□ -0.74
COL6A3-203ENST00000353578 CD7P09564 240 aa10.41□□□□□ -0.74
COL6A3-203ENST00000353578 SAA1P0DJI8 122 aaPredicted RBP10.41□□□□□ -0.74
COL6A3-203ENST00000353578 ZNF138P52744 262 aa10.41□□□□□ -0.74
COL6A3-203ENST00000353578 RPL39P5Q59GN2 51 aa10.41□□□□□ -0.74
COL6A3-203ENST00000353578 Q6ZT83 130 aa10.41□□□□□ -0.74
COL6A3-203ENST00000353578 C20orf78Q9BR46 151 aa10.41□□□□□ -0.74
COL6A3-203ENST00000353578 TAX1BP3O14907 124 aa10.41□□□□□ -0.74
COL6A3-203ENST00000353578 NDUFV3P56181 108 aaKnown RBP10.41□□□□□ -0.74
COL6A3-203ENST00000353578 LINC00158P58513 81 aa10.41□□□□□ -0.74
COL6A3-203ENST00000353578 WFDC3Q8IUB2 231 aa10.41□□□□□ -0.74
COL6A3-203ENST00000353578 HS3ST6Q96QI5 342 aa10.41□□□□□ -0.74
COL6A3-203ENST00000353578 GLRXP35754 106 aa10.4□□□□□ -0.74
COL6A3-203ENST00000353578 TMEM167AQ8TBQ9 72 aa10.4□□□□□ -0.74
COL6A3-203ENST00000353578 SAA2P0DJI9 122 aaPredicted RBP10.4□□□□□ -0.74
COL6A3-203ENST00000353578 TRAV26-1A0A087WT03 109 aa10.4□□□□□ -0.74
COL6A3-203ENST00000353578 HRKO00198 91 aa10.4□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms