RNA–Protein interactions for RNA: ENST00000345005.8

CLK3-201, Transcript of CDC like kinase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLK3, Length 1,846 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-201ENST00000345005 DYNAPQ8N1N2 210 aa10.19□□□□□ -0.78
CLK3-201ENST00000345005 RNASE8Q8TDE3 154 aaKnown RBP10.19□□□□□ -0.78
CLK3-201ENST00000345005 C1orf159Q96HA4 380 aa10.19□□□□□ -0.78
CLK3-201ENST00000345005 A0A1W2PS18 150 aa10.19□□□□□ -0.78
CLK3-201ENST00000345005 IGLC7A0M8Q6 106 aa10.19□□□□□ -0.78
CLK3-201ENST00000345005 C8orf88P0DMB2 117 aa10.19□□□□□ -0.78
CLK3-201ENST00000345005 IBA57Q5T440 356 aaKnown RBP10.19□□□□□ -0.78
CLK3-201ENST00000345005 SMIM12Q96EX1 92 aa10.19□□□□□ -0.78
CLK3-201ENST00000345005 SRSF8Q9BRL6 282 aaKnown RBP10.19□□□□□ -0.78
CLK3-201ENST00000345005 FBXL7Q9UJT9 491 aa10.19□□□□□ -0.78
CLK3-201ENST00000345005 TRAV30A0A087WSZ9 112 aa10.18□□□□□ -0.78
CLK3-201ENST00000345005 TMEM238LA0A1B0GVL6 79 aa10.18□□□□□ -0.78
CLK3-201ENST00000345005 NPFFO15130 113 aa10.18□□□□□ -0.78
CLK3-201ENST00000345005 CNIH1O95406 144 aa10.18□□□□□ -0.78
CLK3-201ENST00000345005 CRYBB3P26998 211 aa10.18□□□□□ -0.78
CLK3-201ENST00000345005 HNRNPA3P51991 378 aaKnown RBP10.18□□□□□ -0.78
CLK3-201ENST00000345005 TXN2Q99757 166 aa10.18□□□□□ -0.78
CLK3-201ENST00000345005 CENPVL3A0A0U1RRI6 287 aa10.17□□□□□ -0.78
CLK3-201ENST00000345005 FAM106CPP0CH98 169 aa10.17□□□□□ -0.78
CLK3-201ENST00000345005 IGLC2P0DOY2 106 aa10.17□□□□□ -0.78
CLK3-201ENST00000345005 IGLC3P0DOY3 106 aa10.17□□□□□ -0.78
CLK3-201ENST00000345005 CD24P25063 80 aa10.17□□□□□ -0.78
CLK3-201ENST00000345005 SAA4P35542 130 aa10.17□□□□□ -0.78
CLK3-201ENST00000345005 C5orf64Q2M2E5 130 aa10.17□□□□□ -0.78
CLK3-201ENST00000345005 TDRG1Q3Y452 100 aa10.17□□□□□ -0.78
CLK3-201ENST00000345005 PVRIGQ6DKI7 326 aa10.17□□□□□ -0.78
CLK3-201ENST00000345005 MIR17HGQ75NE6 70 aa10.17□□□□□ -0.78
CLK3-201ENST00000345005 Q8N6K4 173 aa10.17□□□□□ -0.78
CLK3-201ENST00000345005 SRSF12Q8WXF0 261 aaKnown RBP10.17□□□□□ -0.78
CLK3-201ENST00000345005 TMEM190Q8WZ59 177 aa10.17□□□□□ -0.78
CLK3-201ENST00000345005 AJUBAQ96IF1 538 aa10.17□□□□□ -0.78
CLK3-201ENST00000345005 PSMG3-AS1Q96PY0 264 aa10.17□□□□□ -0.78
CLK3-201ENST00000345005 ALKBH7Q9BT30 221 aaPredicted RBP10.17□□□□□ -0.78
CLK3-201ENST00000345005 B4DSR2 109 aa10.17□□□□□ -0.78
CLK3-201ENST00000345005 CCL25O15444 150 aa10.17□□□□□ -0.78
CLK3-201ENST00000345005 OR7C2O60412 319 aa10.17□□□□□ -0.78
CLK3-201ENST00000345005 MSMBP08118 114 aa10.17□□□□□ -0.78
CLK3-201ENST00000345005 COL8A1P27658 744 aa10.17□□□□□ -0.78
CLK3-201ENST00000345005 KLF5Q13887 457 aaPredicted RBP10.17□□□□□ -0.78
CLK3-201ENST00000345005 SPATA31B1PQ5VZV4 182 aa10.17□□□□□ -0.78
CLK3-201ENST00000345005 ETFRF1Q6IPR1 90 aa10.17□□□□□ -0.78
CLK3-201ENST00000345005 ATP5L2Q7Z4Y8 100 aa10.17□□□□□ -0.78
CLK3-201ENST00000345005 Q8N976 141 aa10.17□□□□□ -0.78
CLK3-201ENST00000345005 NUDT10Q8NFP7 164 aa10.17□□□□□ -0.78
CLK3-201ENST00000345005 OR1L4Q8NGR5 311 aa10.17□□□□□ -0.78
CLK3-201ENST00000345005 GRAMD2BQ96HH9 432 aa10.17□□□□□ -0.78
CLK3-201ENST00000345005 FAM103A1Q9BTL3 118 aaKnown RBP10.17□□□□□ -0.78
CLK3-201ENST00000345005 BEX4Q9NWD9 120 aaPredicted RBP10.17□□□□□ -0.78
CLK3-201ENST00000345005 C1RLQ9NZP8 487 aa10.17□□□□□ -0.78
CLK3-201ENST00000345005 LAMTOR2Q9Y2Q5 125 aa10.17□□□□□ -0.78
CLK3-201ENST00000345005 COX11Q9Y6N1 276 aa10.17□□□□□ -0.78
CLK3-201ENST00000345005 MAST4O15021 2626 aa10.16□□□□□ -0.78
CLK3-201ENST00000345005 TEX22C9J3V5 150 aa10.16□□□□□ -0.78
CLK3-201ENST00000345005 TMEM11P17152 192 aa10.16□□□□□ -0.78
CLK3-201ENST00000345005 SRIP30626 198 aa10.16□□□□□ -0.78
CLK3-201ENST00000345005 MLANAQ16655 118 aa10.16□□□□□ -0.78
CLK3-201ENST00000345005 Q6ZN92 141 aa10.16□□□□□ -0.78
CLK3-201ENST00000345005 SLC25A33Q9BSK2 321 aa10.16□□□□□ -0.78
CLK3-201ENST00000345005 IGHV1-69DA0A0B4J2H0 117 aa10.15□□□□□ -0.78
CLK3-201ENST00000345005 NCBP2LA6PVI3 153 aaKnown RBP10.15□□□□□ -0.78
CLK3-201ENST00000345005 CORTO00230 105 aa10.15□□□□□ -0.78
CLK3-201ENST00000345005 BMPR1BO00238 502 aa10.15□□□□□ -0.78
CLK3-201ENST00000345005 IGHV1-69P01742 117 aa10.15□□□□□ -0.78
CLK3-201ENST00000345005 GATA3P23771 443 aa10.15□□□□□ -0.78
CLK3-201ENST00000345005 SSBP2P81877 361 aaPredicted RBP10.15□□□□□ -0.78
CLK3-201ENST00000345005 BATFQ16520 125 aa10.15□□□□□ -0.78
CLK3-201ENST00000345005 STXBP6Q8NFX7 210 aa10.15□□□□□ -0.78
CLK3-201ENST00000345005 TSKUQ8WUA8 353 aa10.15□□□□□ -0.78
CLK3-201ENST00000345005 IGF2BP2-AS1Q96M15 143 aa10.15□□□□□ -0.78
CLK3-201ENST00000345005 SOX21Q9Y651 276 aaPredicted RBP10.15□□□□□ -0.78
CLK3-201ENST00000345005 CENPEQ02224 2701 aa10.15□□□□□ -0.78
CLK3-201ENST00000345005 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP10.15□□□□□ -0.786e-7■■■□□ 16.8
CLK3-201ENST00000345005 HYPMO75409 117 aa10.14□□□□□ -0.79
CLK3-201ENST00000345005 NDUFB8O95169 186 aa10.14□□□□□ -0.79
CLK3-201ENST00000345005 C3orf79P0CE67 100 aa10.14□□□□□ -0.79
CLK3-201ENST00000345005 HIST1H1EP10412 219 aaKnown RBP10.14□□□□□ -0.79
CLK3-201ENST00000345005 CD33P20138 364 aa10.14□□□□□ -0.79
CLK3-201ENST00000345005 RHOGP84095 191 aa10.14□□□□□ -0.79
CLK3-201ENST00000345005 FXYD3Q14802 87 aa10.14□□□□□ -0.79
CLK3-201ENST00000345005 HIST2H2BCQ6DN03 193 aa10.14□□□□□ -0.79
CLK3-201ENST00000345005 ZNF562Q6V9R5 426 aa10.14□□□□□ -0.79
CLK3-201ENST00000345005 LRRC75A-AS1Q8N1F1 130 aa10.14□□□□□ -0.79
CLK3-201ENST00000345005 PIP4P2Q8N4L2 257 aa10.14□□□□□ -0.79
CLK3-201ENST00000345005 RNASE7Q9H1E1 156 aaKnown RBP10.14□□□□□ -0.79
CLK3-201ENST00000345005 SERTAD4Q9NUC0 356 aa10.14□□□□□ -0.79
CLK3-201ENST00000345005 F11RQ9Y624 299 aaKnown RBP10.14□□□□□ -0.79
CLK3-201ENST00000345005 TRAV9-2A0A087WT02 112 aa10.14□□□□□ -0.79
CLK3-201ENST00000345005 OR2J3O76001 311 aa10.14□□□□□ -0.79
CLK3-201ENST00000345005 MGST1P10620 155 aaKnown RBP10.14□□□□□ -0.79
CLK3-201ENST00000345005 PMCHP20382 165 aa10.14□□□□□ -0.79
CLK3-201ENST00000345005 OR2T6Q8NHC8 308 aa10.14□□□□□ -0.79
CLK3-201ENST00000345005 FNDC4Q9H6D8 234 aaPredicted RBP10.14□□□□□ -0.79
CLK3-201ENST00000345005 C7orf69Q9H7B7 122 aa10.14□□□□□ -0.79
CLK3-201ENST00000345005 IGKV1OR2-108A0A075B7D4 117 aa10.13□□□□□ -0.79
CLK3-201ENST00000345005 HSBP1O75506 76 aa10.13□□□□□ -0.79
CLK3-201ENST00000345005 IGLV2-8P01709 118 aa10.13□□□□□ -0.79
CLK3-201ENST00000345005 CRYGCP07315 174 aa10.13□□□□□ -0.79
CLK3-201ENST00000345005 APELAP0DMC3 54 aa10.13□□□□□ -0.79
CLK3-201ENST00000345005 KRTAP10-9P60411 292 aa10.13□□□□□ -0.79
CLK3-201ENST00000345005 NIT1Q86X76 327 aa10.13□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 60.6 ms