RNA–Protein interactions for RNA: ENST00000338045.7

LIMS1-202, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,876 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-202ENST00000338045 ZNF727A8MUV8 499 aa11.98□□□□□ -0.49
LIMS1-202ENST00000338045 IGHG4P01861 327 aa11.98□□□□□ -0.49
LIMS1-202ENST00000338045 LEMD1Q68G75 181 aa11.98□□□□□ -0.49
LIMS1-202ENST00000338045 S100A7AQ86SG5 101 aa11.98□□□□□ -0.49
LIMS1-202ENST00000338045 RPUSD4Q96CM3 377 aaKnown RBP11.98□□□□□ -0.49
LIMS1-202ENST00000338045 TVP23CQ96ET8 276 aa11.98□□□□□ -0.49
LIMS1-202ENST00000338045 SMIM7Q9BQ49 75 aa11.98□□□□□ -0.49
LIMS1-202ENST00000338045 KLK15Q9H2R5 256 aa11.98□□□□□ -0.49
LIMS1-202ENST00000338045 YAE1D1Q9NRH1 226 aa11.98□□□□□ -0.49
LIMS1-202ENST00000338045 GGTLC3B5MD39 225 aa11.97□□□□□ -0.49
LIMS1-202ENST00000338045 M0R036 132 aa11.97□□□□□ -0.49
LIMS1-202ENST00000338045 UBE2CO00762 179 aa11.97□□□□□ -0.49
LIMS1-202ENST00000338045 PNRC1Q12796 327 aaPredicted RBP11.97□□□□□ -0.49
LIMS1-202ENST00000338045 RHEBQ15382 184 aa11.97□□□□□ -0.49
LIMS1-202ENST00000338045 Q8N2B8 174 aa11.97□□□□□ -0.49
LIMS1-202ENST00000338045 ZFAND3Q9H8U3 227 aa11.97□□□□□ -0.49
LIMS1-202ENST00000338045 SDF2L1Q9HCN8 221 aa11.97□□□□□ -0.49
LIMS1-202ENST00000338045 ANK3Q12955 4377 aaKnown RBP11.97□□□□□ -0.49
LIMS1-202ENST00000338045 SCO2A0A1W2PP80 73 aa11.97□□□□□ -0.49
LIMS1-202ENST00000338045 TMEM89A2RUT3 159 aa11.97□□□□□ -0.49
LIMS1-202ENST00000338045 C7orf77A4D0Y5 90 aa11.97□□□□□ -0.49
LIMS1-202ENST00000338045 PF4V1P10720 104 aa11.97□□□□□ -0.49
LIMS1-202ENST00000338045 DNLZQ5SXM8 178 aa11.97□□□□□ -0.49
LIMS1-202ENST00000338045 C20orf24Q9BUV8 137 aa11.97□□□□□ -0.49
LIMS1-202ENST00000338045 TMEM160Q9NX00 188 aa11.97□□□□□ -0.49
LIMS1-202ENST00000338045 NDUFB4O95168 129 aa11.96□□□□□ -0.49
LIMS1-202ENST00000338045 NBEAP1P0C6P0 100 aa11.96□□□□□ -0.49
LIMS1-202ENST00000338045 PSMB8P28062 276 aa11.96□□□□□ -0.49
LIMS1-202ENST00000338045 RAB9AP51151 201 aa11.96□□□□□ -0.49
LIMS1-202ENST00000338045 TOMM20LQ6UXN7 152 aa11.96□□□□□ -0.49
LIMS1-202ENST00000338045 NAT8Q9UHE5 227 aa11.96□□□□□ -0.49
LIMS1-202ENST00000338045 MYO9AB2RTY4 2548 aa11.96□□□□□ -0.49
LIMS1-202ENST00000338045 ACANP16112 2415 aa11.96□□□□□ -0.5
LIMS1-202ENST00000338045 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP11.95□□□□□ -0.5
LIMS1-202ENST00000338045 A0A0G2JLM5 398 aa11.95□□□□□ -0.5
LIMS1-202ENST00000338045 BMPR1BO00238 502 aa11.95□□□□□ -0.5
LIMS1-202ENST00000338045 MRPS12O15235 138 aaKnown RBP11.95□□□□□ -0.5
LIMS1-202ENST00000338045 HNF1AP20823 631 aa11.95□□□□□ -0.5
LIMS1-202ENST00000338045 MYCNOSP40205 109 aa11.95□□□□□ -0.5
LIMS1-202ENST00000338045 TMEM241Q24JQ0 296 aa11.95□□□□□ -0.5
LIMS1-202ENST00000338045 ZNF674Q2M3X9 581 aa11.95□□□□□ -0.5
LIMS1-202ENST00000338045 SONP18583 2426 aaKnown RBP11.95□□□□□ -0.5
LIMS1-202ENST00000338045 HIST1H1EP10412 219 aaKnown RBP11.95□□□□□ -0.5
LIMS1-202ENST00000338045 NUTF2P61970 127 aaKnown RBP11.95□□□□□ -0.5
LIMS1-202ENST00000338045 SUMO1P63165 101 aaKnown RBP11.95□□□□□ -0.5
LIMS1-202ENST00000338045 ZNF329Q86UD4 541 aa11.95□□□□□ -0.5
LIMS1-202ENST00000338045 BPIFA4PQ86YQ2 179 aa11.95□□□□□ -0.5
LIMS1-202ENST00000338045 DERL1Q9BUN8 251 aa11.95□□□□□ -0.5
LIMS1-202ENST00000338045 ELOVL1Q9BW60 279 aa11.95□□□□□ -0.5
LIMS1-202ENST00000338045 RPS10P5Q9NQ39 176 aa11.95□□□□□ -0.5
LIMS1-202ENST00000338045 RABAC1Q9UI14 185 aa11.95□□□□□ -0.5
LIMS1-202ENST00000338045 RNF24Q9Y225 148 aa11.95□□□□□ -0.5
LIMS1-202ENST00000338045 DUX5Q96PT3 197 aa11.94□□□□□ -0.5
LIMS1-202ENST00000338045 GNB4Q9HAV0 340 aa11.94□□□□□ -0.5
LIMS1-202ENST00000338045 IGHV3-35A0A0C4DH35 117 aa11.93□□□□□ -0.5
LIMS1-202ENST00000338045 B4DEV8 164 aa11.93□□□□□ -0.5
LIMS1-202ENST00000338045 IGLC2P0DOY2 106 aa11.93□□□□□ -0.5
LIMS1-202ENST00000338045 S100A7P31151 101 aa11.93□□□□□ -0.5
LIMS1-202ENST00000338045 GAGE1Q13065 139 aa11.93□□□□□ -0.5
LIMS1-202ENST00000338045 TMEM88Q6PEY1 159 aa11.93□□□□□ -0.5
LIMS1-202ENST00000338045 CBLN2Q8IUK8 224 aa11.93□□□□□ -0.5
LIMS1-202ENST00000338045 C2CD4CQ8TF44 421 aa11.93□□□□□ -0.5
LIMS1-202ENST00000338045 ZNF586Q9NXT0 402 aa11.93□□□□□ -0.5
LIMS1-202ENST00000338045 A0A087WWC5 75 aa11.93□□□□□ -0.5
LIMS1-202ENST00000338045 CLPSL1A2RUU4 121 aa11.93□□□□□ -0.5
LIMS1-202ENST00000338045 DNAJC9-AS1A6NH13 148 aa11.93□□□□□ -0.5
LIMS1-202ENST00000338045 PPP5D1E7EU14 171 aa11.93□□□□□ -0.5
LIMS1-202ENST00000338045 CRYBB3P26998 211 aa11.93□□□□□ -0.5
LIMS1-202ENST00000338045 ARL3P36405 182 aa11.93□□□□□ -0.5
LIMS1-202ENST00000338045 AKR1C3P42330 323 aa11.93□□□□□ -0.5
LIMS1-202ENST00000338045 LCNL1Q6ZST4 164 aa11.93□□□□□ -0.5
LIMS1-202ENST00000338045 BLNKQ8WV28 456 aa11.93□□□□□ -0.5
LIMS1-202ENST00000338045 TRBV20OR9-2A0A075B6H5 130 aa11.92□□□□□ -0.5
LIMS1-202ENST00000338045 J3KRW8 73 aa11.92□□□□□ -0.5
LIMS1-202ENST00000338045 TRBV12-3P01733 135 aa11.92□□□□□ -0.5
LIMS1-202ENST00000338045 SNRPCP09234 159 aaKnown RBP11.92□□□□□ -0.5
LIMS1-202ENST00000338045 RANP62826 216 aaKnown RBP11.92□□□□□ -0.5
LIMS1-202ENST00000338045 RPL23P62829 140 aaKnown RBP11.92□□□□□ -0.5
LIMS1-202ENST00000338045 NOTCH2Q04721 2471 aa11.91□□□□□ -0.5
LIMS1-202ENST00000338045 TRBV19A0A075B6N1 114 aa11.91□□□□□ -0.5
LIMS1-202ENST00000338045 CLDN34H7C241 214 aa11.91□□□□□ -0.5
LIMS1-202ENST00000338045 ELANEP08246 267 aa11.91□□□□□ -0.5
LIMS1-202ENST00000338045 FOLR2P14207 255 aa11.91□□□□□ -0.5
LIMS1-202ENST00000338045 RAB5BP61020 215 aa11.91□□□□□ -0.5
LIMS1-202ENST00000338045 SLC35B1P78383 322 aa11.91□□□□□ -0.5
LIMS1-202ENST00000338045 SCGB2A2Q13296 93 aa11.91□□□□□ -0.5
LIMS1-202ENST00000338045 FOXE3Q13461 319 aa11.91□□□□□ -0.5
LIMS1-202ENST00000338045 TEX38Q6PEX7 206 aa11.91□□□□□ -0.5
LIMS1-202ENST00000338045 C10orf99Q6UWK7 81 aa11.91□□□□□ -0.5
LIMS1-202ENST00000338045 RNF152Q8N8N0 203 aa11.91□□□□□ -0.5
LIMS1-202ENST00000338045 OR4F17Q8NGA8 305 aa11.91□□□□□ -0.5
LIMS1-202ENST00000338045 OR4X2Q8NGF9 303 aa11.91□□□□□ -0.5
LIMS1-202ENST00000338045 MYOZ3Q8TDC0 251 aa11.91□□□□□ -0.5
LIMS1-202ENST00000338045 TUBA4BQ9H853 241 aa11.91□□□□□ -0.5
LIMS1-202ENST00000338045 SMCO4Q9NRQ5 59 aa11.91□□□□□ -0.5
LIMS1-202ENST00000338045 SERTAD4Q9NUC0 356 aa11.91□□□□□ -0.5
LIMS1-202ENST00000338045 C9JCJ5 164 aa11.91□□□□□ -0.5
LIMS1-202ENST00000338045 IGHV3-11P01762 117 aa11.91□□□□□ -0.5
LIMS1-202ENST00000338045 RPL7P18124 248 aaKnown RBP11.91□□□□□ -0.5
LIMS1-202ENST00000338045 WDR73Q6P4I2 378 aa11.91□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 63.6 ms