RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 RNF5Q99942 180 aa11.86□□□□□ -0.51
COL7A1-201ENST00000328333 ZFYVE26Q68DK2 2539 aa11.86□□□□□ -0.51
COL7A1-201ENST00000328333 COX6B1P14854 86 aa11.86□□□□□ -0.51
COL7A1-201ENST00000328333 RPL32P62910 135 aaKnown RBP11.86□□□□□ -0.51
COL7A1-201ENST00000328333 SMRP1Q8NCR6 262 aa11.86□□□□□ -0.51
COL7A1-201ENST00000328333 GNG5P63218 68 aa11.86□□□□□ -0.51
COL7A1-201ENST00000328333 MORN2Q502X0 79 aa11.86□□□□□ -0.51
COL7A1-201ENST00000328333 LEAP2Q969E1 77 aa11.86□□□□□ -0.51
COL7A1-201ENST00000328333 PLA2G2FQ9BZM2 168 aa11.86□□□□□ -0.51
COL7A1-201ENST00000328333 TTC28Q96AY4 2481 aa11.86□□□□□ -0.51
COL7A1-201ENST00000328333 LY6G5BQ8NDX9 201 aa11.86□□□□□ -0.51
COL7A1-201ENST00000328333 K7EP13 123 aa11.86□□□□□ -0.51
COL7A1-201ENST00000328333 LINC01565O15544 149 aa11.86□□□□□ -0.51
COL7A1-201ENST00000328333 CCL4P13236 92 aa11.86□□□□□ -0.51
COL7A1-201ENST00000328333 TAL2Q16559 108 aa11.86□□□□□ -0.51
COL7A1-201ENST00000328333 DEFB124Q8NES8 71 aa11.86□□□□□ -0.51
COL7A1-201ENST00000328333 C9JAW5 83 aa11.86□□□□□ -0.51
COL7A1-201ENST00000328333 HLA-DMBP28068 263 aa11.86□□□□□ -0.51
COL7A1-201ENST00000328333 SIVA1O15304 175 aa11.85□□□□□ -0.51
COL7A1-201ENST00000328333 IGHV3-48P01763 117 aa11.85□□□□□ -0.51
COL7A1-201ENST00000328333 LINC00477Q96M19 166 aa11.85□□□□□ -0.51
COL7A1-201ENST00000328333 PTPRBP23467 1997 aa11.85□□□□□ -0.51
COL7A1-201ENST00000328333 TMEM133Q9H2Q1 129 aa11.85□□□□□ -0.51
COL7A1-201ENST00000328333 TRBV7-1A0A0A6YYK4 115 aa11.85□□□□□ -0.51
COL7A1-201ENST00000328333 C3orf79P0CE67 100 aa11.85□□□□□ -0.51
COL7A1-201ENST00000328333 GTSCR1Q86UQ5 136 aa11.85□□□□□ -0.51
COL7A1-201ENST00000328333 GAGE12JA6NER3 117 aa11.85□□□□□ -0.51
COL7A1-201ENST00000328333 GAGE7O76087 117 aa11.85□□□□□ -0.51
COL7A1-201ENST00000328333 GAGE12FP0CL80 117 aa11.85□□□□□ -0.51
COL7A1-201ENST00000328333 GAGE12GP0CL81 117 aa11.85□□□□□ -0.51
COL7A1-201ENST00000328333 GAGE12IP0CL82 117 aa11.85□□□□□ -0.51
COL7A1-201ENST00000328333 GAGE4Q13068 117 aa11.85□□□□□ -0.51
COL7A1-201ENST00000328333 GAGE12HA6NDE8 117 aa11.85□□□□□ -0.51
COL7A1-201ENST00000328333 K7EMI3 77 aa11.85□□□□□ -0.51
COL7A1-201ENST00000328333 SLC25A28Q96A46 364 aa11.85□□□□□ -0.51
COL7A1-201ENST00000328333 GPR179Q6PRD1 2367 aa11.85□□□□□ -0.51
COL7A1-201ENST00000328333 FCN3O75636 299 aa11.85□□□□□ -0.51
COL7A1-201ENST00000328333 SLAQ13239 276 aa11.85□□□□□ -0.51
COL7A1-201ENST00000328333 STHQ8IWL8 128 aa11.85□□□□□ -0.51
COL7A1-201ENST00000328333 ZNF664Q8N3J9 261 aa11.85□□□□□ -0.51
COL7A1-201ENST00000328333 SPINK2P20155 84 aa11.84□□□□□ -0.51
COL7A1-201ENST00000328333 EVI2AP22794 236 aa11.84□□□□□ -0.51
COL7A1-201ENST00000328333 Q6ZS49 121 aa11.84□□□□□ -0.51
COL7A1-201ENST00000328333 TMEM126AQ9H061 195 aa11.84□□□□□ -0.51
COL7A1-201ENST00000328333 CRIM1Q9NZV1 1036 aa11.84□□□□□ -0.51
COL7A1-201ENST00000328333 CHCHD2Q9Y6H1 151 aaPredicted RBP11.84□□□□□ -0.51
COL7A1-201ENST00000328333 MRPL14Q6P1L8 145 aaKnown RBP11.84□□□□□ -0.51
COL7A1-201ENST00000328333 IL17RELQ6ZVW7 336 aa11.84□□□□□ -0.51
COL7A1-201ENST00000328333 TMEM75Q8N9X5 138 aa11.84□□□□□ -0.51
COL7A1-201ENST00000328333 NOTCH2Q04721 2471 aa11.84□□□□□ -0.51
COL7A1-201ENST00000328333 H3BQ85 93 aa11.84□□□□□ -0.51
COL7A1-201ENST00000328333 ZNF138P52744 262 aa11.84□□□□□ -0.51
COL7A1-201ENST00000328333 TMEM14EPQ6UXP3 125 aa11.84□□□□□ -0.51
COL7A1-201ENST00000328333 FBXL15Q9H469 300 aa11.84□□□□□ -0.51
COL7A1-201ENST00000328333 IGHV2OR16-5A0A0B4J2B6 119 aa11.84□□□□□ -0.51
COL7A1-201ENST00000328333 C1QL2Q7Z5L3 287 aa11.84□□□□□ -0.51
COL7A1-201ENST00000328333 C1QTNF4Q9BXJ3 329 aa11.84□□□□□ -0.51
COL7A1-201ENST00000328333 RPUSD1Q9UJJ7 312 aaKnown RBP11.83□□□□□ -0.51
COL7A1-201ENST00000328333 CDKN1BP46527 198 aa11.83□□□□□ -0.52
COL7A1-201ENST00000328333 LHFPL1Q86WI0 220 aa11.83□□□□□ -0.52
COL7A1-201ENST00000328333 OOSP1A8MZH6 123 aa11.83□□□□□ -0.52
COL7A1-201ENST00000328333 TRGV4A0A0C4DH28 118 aa11.83□□□□□ -0.52
COL7A1-201ENST00000328333 RPL36AP83881 106 aaKnown RBP11.83□□□□□ -0.52
COL7A1-201ENST00000328333 C9orf139Q6ZV77 190 aa11.83□□□□□ -0.52
COL7A1-201ENST00000328333 RPL36ALQ969Q0 106 aaKnown RBP11.83□□□□□ -0.52
COL7A1-201ENST00000328333 CHCHD5Q9BSY4 110 aa11.83□□□□□ -0.52
COL7A1-201ENST00000328333 TRBV6-6A0A0A6YYG2 114 aa11.82□□□□□ -0.52
COL7A1-201ENST00000328333 TRAV8-3A0A0A6YYJ7 113 aa11.82□□□□□ -0.52
COL7A1-201ENST00000328333 SHISA3A0PJX4 238 aa11.82□□□□□ -0.52
COL7A1-201ENST00000328333 IGLV3-32A0A0A0MS00 114 aa11.82□□□□□ -0.52
COL7A1-201ENST00000328333 IGKV3-20P01619 116 aa11.82□□□□□ -0.52
COL7A1-201ENST00000328333 TCRAP04437 139 aa11.82□□□□□ -0.52
COL7A1-201ENST00000328333 ZC2HC1BQ5TFG8 222 aa11.82□□□□□ -0.52
COL7A1-201ENST00000328333 CLEC19AQ6UXS0 136 aa11.82□□□□□ -0.52
COL7A1-201ENST00000328333 SLC22A18ASQ8N1D0 253 aa11.82□□□□□ -0.52
COL7A1-201ENST00000328333 PAX8Q06710 450 aa11.82□□□□□ -0.52
COL7A1-201ENST00000328333 NMSQ5H8A3 153 aa11.82□□□□□ -0.52
COL7A1-201ENST00000328333 MRAPQ8TCY5 172 aa11.82□□□□□ -0.52
COL7A1-201ENST00000328333 NABP1Q96AH0 204 aa11.81□□□□□ -0.52
COL7A1-201ENST00000328333 DSCR8Q96T75 97 aa11.81□□□□□ -0.52
COL7A1-201ENST00000328333 A0A1W2PPM0 123 aa11.81□□□□□ -0.52
COL7A1-201ENST00000328333 CECR9P0C854 216 aa11.81□□□□□ -0.52
COL7A1-201ENST00000328333 TLN2Q9Y4G6 2542 aa11.81□□□□□ -0.52
COL7A1-201ENST00000328333 H0YIZ8 118 aa11.81□□□□□ -0.52
COL7A1-201ENST00000328333 MUC6Q6W4X9 2439 aa11.81□□□□□ -0.52
COL7A1-201ENST00000328333 A0A087WX48 190 aa11.81□□□□□ -0.52
COL7A1-201ENST00000328333 hDV102S1A0JD36 115 aa11.81□□□□□ -0.52
COL7A1-201ENST00000328333 CFPP27918 469 aa11.8□□□□□ -0.52
COL7A1-201ENST00000328333 SUMO4Q6EEV6 95 aa11.8□□□□□ -0.52
COL7A1-201ENST00000328333 MBNL3Q9NUK0 354 aaKnown RBP11.8□□□□□ -0.52
COL7A1-201ENST00000328333 TRAV13-2A0A0B4J235 113 aa11.8□□□□□ -0.52
COL7A1-201ENST00000328333 J3KT08 172 aa11.8□□□□□ -0.52
COL7A1-201ENST00000328333 COX8AP10176 69 aa11.8□□□□□ -0.52
COL7A1-201ENST00000328333 BSPH1Q075Z2 132 aa11.8□□□□□ -0.52
COL7A1-201ENST00000328333 INSP01308 110 aa11.8□□□□□ -0.52
COL7A1-201ENST00000328333 RPP25LQ8N5L8 163 aaKnown RBP11.8□□□□□ -0.52
COL7A1-201ENST00000328333 PYYP10082 97 aa11.8□□□□□ -0.52
COL7A1-201ENST00000328333 KLHDC3Q9BQ90 382 aa11.8□□□□□ -0.52
COL7A1-201ENST00000328333 ANAPC10Q9UM13 185 aa11.8□□□□□ -0.52
COL7A1-201ENST00000328333 USMG5Q96IX5 58 aa11.79□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms