RNA–Protein interactions for RNA: ENST00000307340.7

USH2A-201, Transcript of usherin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USH2A, Length 18,883 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-201ENST00000307340 NDUFC1O43677 76 aa3.31□□□□□ -1.88
USH2A-201ENST00000307340 DAZ2Q13117 558 aaKnown RBP3.31□□□□□ -1.88
USH2A-201ENST00000307340 DAZ4Q86SG3 579 aaKnown RBP3.31□□□□□ -1.88
USH2A-201ENST00000307340 DAZ3Q9NR90 486 aaKnown RBP3.31□□□□□ -1.88
USH2A-201ENST00000307340 SYS1-DBNDD2H3BUS1 97 aa3.31□□□□□ -1.88
USH2A-201ENST00000307340 KHDC1LQ5JSQ8 128 aa3.31□□□□□ -1.88
USH2A-201ENST00000307340 C1QL3Q5VWW1 255 aa3.31□□□□□ -1.88
USH2A-201ENST00000307340 MUC22E2RYF6 1773 aaPredicted RBP3.31□□□□□ -1.88
USH2A-201ENST00000307340 JMJD7-PLA2G4BH0Y9G9 81 aa3.31□□□□□ -1.88
USH2A-201ENST00000307340 TSPAN13O95857 204 aa3.31□□□□□ -1.88
USH2A-201ENST00000307340 INSP01308 110 aa3.31□□□□□ -1.88
USH2A-201ENST00000307340 HERVK_113P63121 156 aa3.31□□□□□ -1.88
USH2A-201ENST00000307340 PAX2Q02962 417 aa3.31□□□□□ -1.88
USH2A-201ENST00000307340 IGHV3-15A0A0B4J1V0 119 aa3.31□□□□□ -1.88
USH2A-201ENST00000307340 TRAV25A0A0B4J276 109 aa3.31□□□□□ -1.88
USH2A-201ENST00000307340 PRTN3P24158 256 aa3.31□□□□□ -1.88
USH2A-201ENST00000307340 ZNF124Q15973 351 aa3.31□□□□□ -1.88
USH2A-201ENST00000307340 F11RQ9Y624 299 aaKnown RBP3.31□□□□□ -1.88
USH2A-201ENST00000307340 IGHV1-8P0DP01 117 aa3.3□□□□□ -1.88
USH2A-201ENST00000307340 Q71RC1 249 aaPredicted RBP3.3□□□□□ -1.88
USH2A-201ENST00000307340 BIVMQ86UB2 503 aa3.3□□□□□ -1.88
USH2A-201ENST00000307340 KLHDC2Q9Y2U9 406 aa3.3□□□□□ -1.88
USH2A-201ENST00000307340 SORL1Q92673 2214 aa3.3□□□□□ -1.88
USH2A-201ENST00000307340 LCN12Q6JVE5 192 aa3.3□□□□□ -1.88
USH2A-201ENST00000307340 ANAPC13Q9BS18 74 aa3.3□□□□□ -1.88
USH2A-201ENST00000307340 GVINP1Q7Z2Y8 2422 aa3.3□□□□□ -1.88
USH2A-201ENST00000307340 IGLV3-9A0A075B6K5 115 aa3.3□□□□□ -1.88
USH2A-201ENST00000307340 PSG7Q13046 419 aa3.3□□□□□ -1.88
USH2A-201ENST00000307340 HIST3H2BBQ8N257 126 aa3.3□□□□□ -1.88
USH2A-201ENST00000307340 MEX3AA1L020 520 aaKnown RBP3.3□□□□□ -1.88
USH2A-201ENST00000307340 C9orf172C9J069 976 aa3.3□□□□□ -1.88
USH2A-201ENST00000307340 GAS1P54826 345 aa3.3□□□□□ -1.88
USH2A-201ENST00000307340 TMEM258P61165 79 aa3.3□□□□□ -1.88
USH2A-201ENST00000307340 ZNF56Q15929 161 aa3.3□□□□□ -1.88
USH2A-201ENST00000307340 FLVCR1-AS1Q8TAF5 88 aa3.3□□□□□ -1.88
USH2A-201ENST00000307340 CARD19Q96LW7 228 aa3.3□□□□□ -1.88
USH2A-201ENST00000307340 SAA2P0DJI9 122 aaPredicted RBP3.3□□□□□ -1.88
USH2A-201ENST00000307340 TMEM170BQ5T4T1 132 aa3.3□□□□□ -1.88
USH2A-201ENST00000307340 UNQ5815/PRO19632Q6UWF5 114 aa3.3□□□□□ -1.88
USH2A-201ENST00000307340 TMEM160Q9NX00 188 aa3.3□□□□□ -1.88
USH2A-201ENST00000307340 GNG10P50151 68 aa3.3□□□□□ -1.88
USH2A-201ENST00000307340 KLF5Q13887 457 aaPredicted RBP3.3□□□□□ -1.88
USH2A-201ENST00000307340 CXorf67Q86X51 503 aaPredicted RBP3.3□□□□□ -1.88
USH2A-201ENST00000307340 PARP12Q9H0J9 701 aaKnown RBP3.3□□□□□ -1.88
USH2A-201ENST00000307340 DKK4Q9UBT3 224 aa3.3□□□□□ -1.88
USH2A-201ENST00000307340 UBL5Q9BZL1 73 aa3.3□□□□□ -1.88
USH2A-201ENST00000307340 FOXQ1Q9C009 403 aa3.3□□□□□ -1.88
USH2A-201ENST00000307340 ERG28Q9UKR5 140 aa3.3□□□□□ -1.88
USH2A-201ENST00000307340 APOHP02749 345 aaPredicted RBP3.3□□□□□ -1.88
USH2A-201ENST00000307340 GLI4P10075 376 aa3.3□□□□□ -1.88
USH2A-201ENST00000307340 AJUBAQ96IF1 538 aa3.3□□□□□ -1.88
USH2A-201ENST00000307340 SAA1P0DJI8 122 aaPredicted RBP3.3□□□□□ -1.88
USH2A-201ENST00000307340 IL9P15248 144 aa3.3□□□□□ -1.88
USH2A-201ENST00000307340 RPP25LQ8N5L8 163 aaKnown RBP3.3□□□□□ -1.88
USH2A-201ENST00000307340 F8VRH5 84 aa3.3□□□□□ -1.88
USH2A-201ENST00000307340 H3BVH4 76 aa3.3□□□□□ -1.88
USH2A-201ENST00000307340 ZNF479Q96JC4 524 aa3.3□□□□□ -1.88
USH2A-201ENST00000307340 NEUROG3Q9Y4Z2 214 aa3.3□□□□□ -1.88
USH2A-201ENST00000307340 MIC13Q5XKP0 118 aa3.3□□□□□ -1.88
USH2A-201ENST00000307340 ZNF833PQ6ZTB9 187 aa3.3□□□□□ -1.88
USH2A-201ENST00000307340 COL4A5P29400 1685 aa3.3□□□□□ -1.88
USH2A-201ENST00000307340 GOLT1AQ6ZVE7 132 aa3.3□□□□□ -1.88
USH2A-201ENST00000307340 HIGD1BQ9P298 99 aa3.3□□□□□ -1.88
USH2A-201ENST00000307340 IGHV2-26A0A0B4J1V2 119 aa3.3□□□□□ -1.88
USH2A-201ENST00000307340 GFRA3O60609 400 aa3.3□□□□□ -1.88
USH2A-201ENST00000307340 PPIFP30405 207 aaKnown RBP3.3□□□□□ -1.88
USH2A-201ENST00000307340 CCL8P80075 99 aa3.3□□□□□ -1.88
USH2A-201ENST00000307340 C5orf64Q2M2E5 130 aa3.3□□□□□ -1.88
USH2A-201ENST00000307340 ZFP2Q6ZN57 461 aa3.3□□□□□ -1.88
USH2A-201ENST00000307340 SHISA8B8ZZ34 492 aa3.3□□□□□ -1.88
USH2A-201ENST00000307340 TIAF1O95411 115 aa3.3□□□□□ -1.88
USH2A-201ENST00000307340 IGLV1-44P01699 117 aa3.3□□□□□ -1.88
USH2A-201ENST00000307340 TCRAP04437 139 aa3.3□□□□□ -1.88
USH2A-201ENST00000307340 KIAA1644Q3SXP7 199 aa3.3□□□□□ -1.88
USH2A-201ENST00000307340 SMIM2Q9BVW6 85 aa3.3□□□□□ -1.88
USH2A-201ENST00000307340 BUB1B-PAK6H3BSN5 160 aa3.29□□□□□ -1.88
USH2A-201ENST00000307340 CCL4P13236 92 aa3.29□□□□□ -1.88
USH2A-201ENST00000307340 APOC4P55056 127 aa3.29□□□□□ -1.88
USH2A-201ENST00000307340 PCSK5Q92824 1860 aa3.29□□□□□ -1.88
USH2A-201ENST00000307340 IGHV2-5P01817 119 aa3.29□□□□□ -1.88
USH2A-201ENST00000307340 HOXB3P14651 431 aaPredicted RBP3.29□□□□□ -1.88
USH2A-201ENST00000307340 RNF138Q8WVD3 245 aa3.29□□□□□ -1.88
USH2A-201ENST00000307340 ERVH48-1M5A8F1 160 aa3.29□□□□□ -1.88
USH2A-201ENST00000307340 LYPD3O95274 346 aa3.29□□□□□ -1.88
USH2A-201ENST00000307340 CECR9P0C854 216 aa3.29□□□□□ -1.88
USH2A-201ENST00000307340 PPP1R32Q7Z5V6 425 aa3.29□□□□□ -1.88
USH2A-201ENST00000307340 ATP5EP2Q5VTU8 51 aa3.29□□□□□ -1.88
USH2A-201ENST00000307340 NPIPB3Q92617 1050 aa3.29□□□□□ -1.88
USH2A-201ENST00000307340 TMEM178BH3BS89 294 aa3.29□□□□□ -1.88
USH2A-201ENST00000307340 NDUFA4O00483 81 aa3.29□□□□□ -1.88
USH2A-201ENST00000307340 BSPH1Q075Z2 132 aa3.29□□□□□ -1.88
USH2A-201ENST00000307340 RFESDQ8TAC1 157 aa3.29□□□□□ -1.88
USH2A-201ENST00000307340 ZC2HC1AQ96GY0 325 aa3.29□□□□□ -1.88
USH2A-201ENST00000307340 SIGLEC8Q9NYZ4 499 aa3.29□□□□□ -1.88
USH2A-201ENST00000307340 NDUFB1O75438 58 aa3.29□□□□□ -1.88
USH2A-201ENST00000307340 PRRC2AP48634 2157 aaKnown RBP3.29□□□□□ -1.88
USH2A-201ENST00000307340 PLA2G3Q9NZ20 509 aa3.29□□□□□ -1.88
USH2A-201ENST00000307340 TRAV24A0A0B4J272 114 aa3.29□□□□□ -1.88
USH2A-201ENST00000307340 GATA2P23769 480 aaPredicted RBP3.29□□□□□ -1.88
USH2A-201ENST00000307340 MRPL23Q16540 153 aaKnown RBP3.29□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms