RNA–Protein interactions for RNA: ENST00000297979.9

C9orf3-202, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 1 (best) BASIC

Gene C9orf3, Length 2,820 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-202ENST00000297979 UBE2L3P68036 154 aaKnown RBP11.19□□□□□ -0.62
C9orf3-202ENST00000297979 OR5I1Q13606 314 aa11.19□□□□□ -0.62
C9orf3-202ENST00000297979 TMEM241Q24JQ0 296 aa11.19□□□□□ -0.62
C9orf3-202ENST00000297979 TRAV30A0A087WSZ9 112 aa11.18□□□□□ -0.62
C9orf3-202ENST00000297979 GGCTO75223 188 aaKnown RBP11.18□□□□□ -0.62
C9orf3-202ENST00000297979 OR2J3O76001 311 aa11.18□□□□□ -0.62
C9orf3-202ENST00000297979 Q96MF0 132 aa11.18□□□□□ -0.62
C9orf3-202ENST00000297979 TUBA4BQ9H853 241 aa11.18□□□□□ -0.62
C9orf3-202ENST00000297979 GAR1Q9NY12 217 aaKnown RBP11.18□□□□□ -0.62
C9orf3-202ENST00000297979 C21orf62Q9NYP8 219 aa11.18□□□□□ -0.62
C9orf3-202ENST00000297979 S4R3C0 116 aa11.18□□□□□ -0.62
C9orf3-202ENST00000297979 PTPN13Q12923 2485 aa11.18□□□□□ -0.62
C9orf3-202ENST00000297979 A0A087WWC5 75 aa11.18□□□□□ -0.62
C9orf3-202ENST00000297979 A6NDX4 124 aa11.18□□□□□ -0.62
C9orf3-202ENST00000297979 GNG7O60262 68 aa11.18□□□□□ -0.62
C9orf3-202ENST00000297979 NDUFB8O95169 186 aa11.18□□□□□ -0.62
C9orf3-202ENST00000297979 AMY1AP04745 511 aa11.18□□□□□ -0.62
C9orf3-202ENST00000297979 LYZP61626 148 aa11.18□□□□□ -0.62
C9orf3-202ENST00000297979 PAXXQ9BUH6 204 aa11.18□□□□□ -0.62
C9orf3-202ENST00000297979 CSMD2Q7Z408 3487 aa11.18□□□□□ -0.62
C9orf3-202ENST00000297979 CR1P17927 2039 aa11.18□□□□□ -0.62
C9orf3-202ENST00000297979 LINC01548A6NM66 108 aa11.17□□□□□ -0.62
C9orf3-202ENST00000297979 COLCA2A8K830 154 aa11.17□□□□□ -0.62
C9orf3-202ENST00000297979 LY6EQ16553 131 aa11.17□□□□□ -0.62
C9orf3-202ENST00000297979 HIST2H2BCQ6DN03 193 aa11.17□□□□□ -0.62
C9orf3-202ENST00000297979 FBXL7Q9UJT9 491 aa11.17□□□□□ -0.62
C9orf3-202ENST00000297979 HIGD1AQ9Y241 93 aa11.17□□□□□ -0.62
C9orf3-202ENST00000297979 ZFP30Q9Y2G7 519 aa11.17□□□□□ -0.62
C9orf3-202ENST00000297979 ABCA1O95477 2261 aa11.17□□□□□ -0.62
C9orf3-202ENST00000297979 SCO2A0A1W2PP80 73 aa11.17□□□□□ -0.62
C9orf3-202ENST00000297979 NDUFB4O95168 129 aa11.17□□□□□ -0.62
C9orf3-202ENST00000297979 TOMM40O96008 361 aa11.17□□□□□ -0.62
C9orf3-202ENST00000297979 KLK9Q2XQG4 91 aa11.17□□□□□ -0.62
C9orf3-202ENST00000297979 Q56UQ5 140 aa11.17□□□□□ -0.62
C9orf3-202ENST00000297979 C16orf82Q7Z2V1 217 aa11.17□□□□□ -0.62
C9orf3-202ENST00000297979 KRTAP1-3Q8IUG1 177 aa11.17□□□□□ -0.62
C9orf3-202ENST00000297979 C15orf54Q8N8G6 183 aa11.17□□□□□ -0.62
C9orf3-202ENST00000297979 KLK9Q9UKQ9 250 aa11.17□□□□□ -0.62
C9orf3-202ENST00000297979 PYYP10082 97 aa11.17□□□□□ -0.62
C9orf3-202ENST00000297979 OR10D4PQ8NGN7 298 aa11.17□□□□□ -0.62
C9orf3-202ENST00000297979 PITPNC1Q9UKF7 332 aa11.17□□□□□ -0.62
C9orf3-202ENST00000297979 POLQO75417 2590 aa11.16□□□□□ -0.62
C9orf3-202ENST00000297979 A0A1W2PRE2 83 aa11.16□□□□□ -0.62
C9orf3-202ENST00000297979 F8W735 103 aaPredicted RBP11.16□□□□□ -0.62
C9orf3-202ENST00000297979 G3V318 75 aa11.16□□□□□ -0.62
C9orf3-202ENST00000297979 YPEL3P61236 119 aaPredicted RBP11.16□□□□□ -0.62
C9orf3-202ENST00000297979 ADIRFQ15847 76 aa11.16□□□□□ -0.62
C9orf3-202ENST00000297979 C11orf52Q96A22 123 aa11.16□□□□□ -0.62
C9orf3-202ENST00000297979 ISOC2Q96AB3 205 aa11.16□□□□□ -0.62
C9orf3-202ENST00000297979 DOPEY2Q9Y3R5 2298 aa11.16□□□□□ -0.62
C9orf3-202ENST00000297979 PHOX2AO14813 284 aa11.16□□□□□ -0.62
C9orf3-202ENST00000297979 RIPPLY3P57055 190 aa11.16□□□□□ -0.62
C9orf3-202ENST00000297979 VN1R17PQ8TDU5 208 aa11.16□□□□□ -0.62
C9orf3-202ENST00000297979 RNF125Q96EQ8 232 aa11.16□□□□□ -0.62
C9orf3-202ENST00000297979 DERL1Q9BUN8 251 aa11.16□□□□□ -0.62
C9orf3-202ENST00000297979 SVEP1Q4LDE5 3571 aa11.16□□□□□ -0.62
C9orf3-202ENST00000297979 K7EQM0 130 aa11.15□□□□□ -0.62
C9orf3-202ENST00000297979 OR2C1O95371 312 aa11.15□□□□□ -0.62
C9orf3-202ENST00000297979 RAB9AP51151 201 aa11.15□□□□□ -0.62
C9orf3-202ENST00000297979 CRIP2P52943 208 aaPredicted RBP11.15□□□□□ -0.62
C9orf3-202ENST00000297979 RPL23P62829 140 aaKnown RBP11.15□□□□□ -0.62
C9orf3-202ENST00000297979 ZNF664Q8N3J9 261 aa11.15□□□□□ -0.62
C9orf3-202ENST00000297979 FXYD5Q96DB9 178 aa11.15□□□□□ -0.62
C9orf3-202ENST00000297979 TENM4Q6N022 2769 aa11.15□□□□□ -0.62
C9orf3-202ENST00000297979 MDFIC2A0A1B0GVS7 189 aa11.15□□□□□ -0.62
C9orf3-202ENST00000297979 CDX1P47902 265 aaPredicted RBP11.15□□□□□ -0.62
C9orf3-202ENST00000297979 MRPL27Q9P0M9 148 aaKnown RBP11.15□□□□□ -0.62
C9orf3-202ENST00000297979 TRBV9A0A0B4J1U6 114 aa11.14□□□□□ -0.63
C9orf3-202ENST00000297979 GGTLC3B5MD39 225 aa11.14□□□□□ -0.63
C9orf3-202ENST00000297979 IGHV3-23P01764 117 aa11.14□□□□□ -0.63
C9orf3-202ENST00000297979 HOXA5P20719 270 aa11.14□□□□□ -0.63
C9orf3-202ENST00000297979 FCGR2BP31994 310 aaPredicted RBP11.14□□□□□ -0.63
C9orf3-202ENST00000297979 RHOGP84095 191 aa11.14□□□□□ -0.63
C9orf3-202ENST00000297979 TRAV41A0A0B4J266 112 aa11.14□□□□□ -0.63
C9orf3-202ENST00000297979 C15orf32Q32M92 178 aa11.14□□□□□ -0.63
C9orf3-202ENST00000297979 SAMD13Q5VXD3 122 aa11.14□□□□□ -0.63
C9orf3-202ENST00000297979 ZNF491Q8N8L2 437 aa11.14□□□□□ -0.63
C9orf3-202ENST00000297979 SLC25A39Q9BZJ4 359 aaPredicted RBP11.14□□□□□ -0.63
C9orf3-202ENST00000297979 F8WDY8 70 aa11.13□□□□□ -0.63
C9orf3-202ENST00000297979 IL4P05112 153 aa11.13□□□□□ -0.63
C9orf3-202ENST00000297979 DEFB112Q30KQ8 113 aa11.13□□□□□ -0.63
C9orf3-202ENST00000297979 C19orf54Q5BKX5 351 aa11.13□□□□□ -0.63
C9orf3-202ENST00000297979 BCL6BQ8N143 479 aaPredicted RBP11.13□□□□□ -0.63
C9orf3-202ENST00000297979 NECAP1Q8NC96 275 aa11.13□□□□□ -0.63
C9orf3-202ENST00000297979 CENPEQ02224 2701 aa11.13□□□□□ -0.63
C9orf3-202ENST00000297979 NAV2Q8IVL1 2488 aa11.13□□□□□ -0.63
C9orf3-202ENST00000297979 WI2-2373I1.2A0A1W2PRP0 233 aa11.13□□□□□ -0.63
C9orf3-202ENST00000297979 OR2T8A6NH00 312 aa11.13□□□□□ -0.63
C9orf3-202ENST00000297979 FSHBP01225 129 aa11.13□□□□□ -0.63
C9orf3-202ENST00000297979 GP9P14770 177 aa11.13□□□□□ -0.63
C9orf3-202ENST00000297979 OCIAD2Q56VL3 154 aa11.13□□□□□ -0.63
C9orf3-202ENST00000297979 Q8WTZ3 238 aa11.13□□□□□ -0.63
C9orf3-202ENST00000297979 TMEM242Q9NWH2 141 aa11.13□□□□□ -0.63
C9orf3-202ENST00000297979 SUMO1P63165 101 aaKnown RBP11.13□□□□□ -0.63
C9orf3-202ENST00000297979 OR5R1Q8NH85 324 aa11.13□□□□□ -0.63
C9orf3-202ENST00000297979 ZNF502Q8TBZ5 544 aa11.13□□□□□ -0.63
C9orf3-202ENST00000297979 HIST1H2BAQ96A08 127 aa11.13□□□□□ -0.63
C9orf3-202ENST00000297979 ABCA12Q86UK0 2595 aa11.12□□□□□ -0.63
C9orf3-202ENST00000297979 IGHG2P01859 326 aa11.12□□□□□ -0.63
C9orf3-202ENST00000297979 IGF1P05019 195 aa11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 58.2 ms