RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 PMCHL2Q9BQD1 86 aa13.18□□□□□ -0.3
VPS54-201ENST00000272322 COL25A1Q9BXS0 654 aaPredicted RBP13.18□□□□□ -0.3
VPS54-201ENST00000272322 RAB1BQ9H0U4 201 aa13.18□□□□□ -0.3
VPS54-201ENST00000272322 UBTD1Q9HAC8 227 aa13.18□□□□□ -0.3
VPS54-201ENST00000272322 LINC00527Q9UJ94 153 aa13.18□□□□□ -0.3
VPS54-201ENST00000272322 OR2T8A6NH00 312 aa13.18□□□□□ -0.3
VPS54-201ENST00000272322 TCRAP04437 139 aa13.18□□□□□ -0.3
VPS54-201ENST00000272322 WDR73Q6P4I2 378 aa13.18□□□□□ -0.3
VPS54-201ENST00000272322 THAP8Q8NA92 274 aa13.18□□□□□ -0.3
VPS54-201ENST00000272322 TSKUQ8WUA8 353 aa13.18□□□□□ -0.3
VPS54-201ENST00000272322 DPM3Q9P2X0 92 aa13.18□□□□□ -0.3
VPS54-201ENST00000272322 ZANQ9Y493 2812 aa13.17□□□□□ -0.3
VPS54-201ENST00000272322 LOC105371242A0A075B767 164 aa13.17□□□□□ -0.3
VPS54-201ENST00000272322 CA7P43166 264 aa13.17□□□□□ -0.3
VPS54-201ENST00000272322 TAS2R60P59551 318 aa13.17□□□□□ -0.3
VPS54-201ENST00000272322 C18orf32Q8TCD1 76 aa13.17□□□□□ -0.3
VPS54-201ENST00000272322 RNF2Q99496 336 aa13.17□□□□□ -0.3
VPS54-201ENST00000272322 C3orf79P0CE67 100 aa13.17□□□□□ -0.3
VPS54-201ENST00000272322 TMEM116Q8NCL8 245 aa13.17□□□□□ -0.3
VPS54-201ENST00000272322 C8orf46Q8TAG6 207 aa13.17□□□□□ -0.3
VPS54-201ENST00000272322 GTSF1Q8WW33 167 aa13.17□□□□□ -0.3
VPS54-201ENST00000272322 BORCS7Q96B45 105 aa13.17□□□□□ -0.3
VPS54-201ENST00000272322 TIMD4Q96H15 378 aa13.17□□□□□ -0.3
VPS54-201ENST00000272322 LY96Q9Y6Y9 160 aa13.17□□□□□ -0.3
VPS54-201ENST00000272322 M0R2Z0 102 aa13.16□□□□□ -0.3
VPS54-201ENST00000272322 HLA-DQA1P01909 254 aa13.16□□□□□ -0.3
VPS54-201ENST00000272322 HIST1H1EP10412 219 aaKnown RBP13.16□□□□□ -0.3
VPS54-201ENST00000272322 TMEM11P17152 192 aa13.16□□□□□ -0.3
VPS54-201ENST00000272322 ATP5IP56385 69 aaPredicted RBP13.16□□□□□ -0.3
VPS54-201ENST00000272322 C1orf194Q5T5A4 169 aa13.16□□□□□ -0.3
VPS54-201ENST00000272322 GP9P14770 177 aa13.16□□□□□ -0.3
VPS54-201ENST00000272322 PAFAH1B2P68402 229 aa13.16□□□□□ -0.3
VPS54-201ENST00000272322 NDPQ00604 133 aa13.16□□□□□ -0.3
VPS54-201ENST00000272322 ECSCRQ19T08 205 aa13.16□□□□□ -0.3
VPS54-201ENST00000272322 PTPN13Q12923 2485 aa13.16□□□□□ -0.3
VPS54-201ENST00000272322 ZNF324O75467 553 aaPredicted RBP13.15□□□□□ -0.3
VPS54-201ENST00000272322 FXYD7P58549 80 aa13.15□□□□□ -0.3
VPS54-201ENST00000272322 TRGV9Q99603 122 aa13.15□□□□□ -0.3
VPS54-201ENST00000272322 TMUB1Q9BVT8 246 aa13.15□□□□□ -0.3
VPS54-201ENST00000272322 NBR2O15453 112 aa13.15□□□□□ -0.3
VPS54-201ENST00000272322 ZFP36P26651 326 aaKnown RBP13.15□□□□□ -0.3
VPS54-201ENST00000272322 K7EIM0 57 aa13.15□□□□□ -0.3
VPS54-201ENST00000272322 ZNF207O43670 478 aaKnown RBP13.15□□□□□ -0.3
VPS54-201ENST00000272322 LINC00173Q6ZV60 143 aa13.15□□□□□ -0.3
VPS54-201ENST00000272322 C5orf17Q8NAS9 161 aa13.15□□□□□ -0.3
VPS54-201ENST00000272322 GRAMD2BQ96HH9 432 aa13.15□□□□□ -0.3
VPS54-201ENST00000272322 HLA-DMBP28068 263 aa13.14□□□□□ -0.31
VPS54-201ENST00000272322 TMEM183BQ1AE95 376 aa13.14□□□□□ -0.31
VPS54-201ENST00000272322 LURAP1LQ8IV03 231 aa13.14□□□□□ -0.31
VPS54-201ENST00000272322 KCNS1Q96KK3 526 aa13.14□□□□□ -0.31
VPS54-201ENST00000272322 SONP18583 2426 aaKnown RBP13.14□□□□□ -0.31
VPS54-201ENST00000272322 I3L2K1 104 aa13.14□□□□□ -0.31
VPS54-201ENST00000272322 TCAPO15273 167 aa13.14□□□□□ -0.31
VPS54-201ENST00000272322 CRYGCP07315 174 aa13.14□□□□□ -0.31
VPS54-201ENST00000272322 SPATA45Q537H7 98 aa13.14□□□□□ -0.31
VPS54-201ENST00000272322 TXN2Q99757 166 aa13.14□□□□□ -0.31
VPS54-201ENST00000272322 CRYGBP07316 175 aa13.14□□□□□ -0.31
VPS54-201ENST00000272322 SSX8Q7RTT4 187 aa13.14□□□□□ -0.31
VPS54-201ENST00000272322 ARL2-SNX15V9GYD0 113 aa13.14□□□□□ -0.31
VPS54-201ENST00000272322 MYO9AB2RTY4 2548 aa13.13□□□□□ -0.31
VPS54-201ENST00000272322 CHEK1O14757 476 aa13.13□□□□□ -0.31
VPS54-201ENST00000272322 MT-ND6P03923 174 aa13.13□□□□□ -0.31
VPS54-201ENST00000272322 Q8TAT8 98 aa13.13□□□□□ -0.31
VPS54-201ENST00000272322 RPP21Q9H633 154 aaKnown RBP13.13□□□□□ -0.31
VPS54-201ENST00000272322 SERTM2A0A1B0GWG4 89 aa13.13□□□□□ -0.31
VPS54-201ENST00000272322 M0R143 59 aa13.13□□□□□ -0.31
VPS54-201ENST00000272322 UQCRFS1P47985 274 aa13.13□□□□□ -0.31
VPS54-201ENST00000272322 Q0VG73 95 aa13.13□□□□□ -0.31
VPS54-201ENST00000272322 FAM120AOSQ5T036 256 aa13.13□□□□□ -0.31
VPS54-201ENST00000272322 Q6ZVH6 145 aa13.13□□□□□ -0.31
VPS54-201ENST00000272322 VMO1Q7Z5L0 202 aa13.13□□□□□ -0.31
VPS54-201ENST00000272322 PAX1P15863 534 aa13.12□□□□□ -0.31
VPS54-201ENST00000272322 NIT1Q86X76 327 aa13.12□□□□□ -0.31
VPS54-201ENST00000272322 STXBP6Q8NFX7 210 aa13.12□□□□□ -0.31
VPS54-201ENST00000272322 RNF125Q96EQ8 232 aa13.12□□□□□ -0.31
VPS54-201ENST00000272322 C8orf49Q96NF6 230 aa13.12□□□□□ -0.31
VPS54-201ENST00000272322 ZNF25P17030 456 aaPredicted RBP13.12□□□□□ -0.31
VPS54-201ENST00000272322 OR4F17Q8NGA8 305 aa13.12□□□□□ -0.31
VPS54-201ENST00000272322 MBD6Q96DN6 1003 aa13.12□□□□□ -0.31
VPS54-201ENST00000272322 IGKV2-40A0A087WW87 121 aaPredicted RBP13.11□□□□□ -0.31
VPS54-201ENST00000272322 LOC389332A0A1B0GUA5 103 aa13.11□□□□□ -0.31
VPS54-201ENST00000272322 IGKV2D-40P01614 121 aaPredicted RBP13.11□□□□□ -0.31
VPS54-201ENST00000272322 FAM71F2Q6NXP2 309 aa13.11□□□□□ -0.31
VPS54-201ENST00000272322 ERASQ7Z444 233 aa13.11□□□□□ -0.31
VPS54-201ENST00000272322 CCDC168Q8NDH2 2452 aa13.11□□□□□ -0.31
VPS54-201ENST00000272322 NDUFB8O95169 186 aa13.11□□□□□ -0.31
VPS54-201ENST00000272322 MYCNOSP40205 109 aa13.11□□□□□ -0.31
VPS54-201ENST00000272322 BPIFA4PQ86YQ2 179 aa13.11□□□□□ -0.31
VPS54-201ENST00000272322 BEND2Q8NDZ0 799 aa13.11□□□□□ -0.31
VPS54-201ENST00000272322 TRAV9-1A0A075B6T8 112 aa13.1□□□□□ -0.31
VPS54-201ENST00000272322 TRBV9A0A0B4J1U6 114 aa13.1□□□□□ -0.31
VPS54-201ENST00000272322 A8MWL6 223 aa13.1□□□□□ -0.31
VPS54-201ENST00000272322 ZNF491Q8N8L2 437 aa13.1□□□□□ -0.31
VPS54-201ENST00000272322 ZC2HC1AQ96GY0 325 aa13.1□□□□□ -0.31
VPS54-201ENST00000272322 LINC01548A6NM66 108 aa13.1□□□□□ -0.31
VPS54-201ENST00000272322 KLRB1Q12918 225 aa13.1□□□□□ -0.31
VPS54-201ENST00000272322 EBLN2Q6P2I7 272 aa13.1□□□□□ -0.31
VPS54-201ENST00000272322 Q6ZN92 141 aa13.1□□□□□ -0.31
VPS54-201ENST00000272322 TMEM219Q86XT9 240 aa13.1□□□□□ -0.31
VPS54-201ENST00000272322 ARMS2P0C7Q2 107 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms