RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 LINC01551Q86U37 167 aa12.76□□□□□ -0.37
USP4-201ENST00000265560 NSD1Q96L73 2696 aaPredicted RBP12.76□□□□□ -0.37
USP4-201ENST00000265560 A0A1W2PRE2 83 aa12.75□□□□□ -0.37
USP4-201ENST00000265560 HELTA6NFD8 242 aa12.75□□□□□ -0.37
USP4-201ENST00000265560 TGOLN2O43493 480 aa12.75□□□□□ -0.37
USP4-201ENST00000265560 H3BRN7 92 aa12.75□□□□□ -0.37
USP4-201ENST00000265560 ZFP82Q8N141 532 aa12.75□□□□□ -0.37
USP4-201ENST00000265560 TMEM68Q96MH6 324 aa12.75□□□□□ -0.37
USP4-201ENST00000265560 FOXC2Q99958 501 aa12.75□□□□□ -0.37
USP4-201ENST00000265560 OR8I2Q8N0Y5 310 aa12.75□□□□□ -0.37
USP4-201ENST00000265560 Q9H3A6 140 aa12.75□□□□□ -0.37
USP4-201ENST00000265560 TGIF2-C20orf24A0A0A6YYL0 155 aa12.74□□□□□ -0.37
USP4-201ENST00000265560 K7EN84 100 aa12.74□□□□□ -0.37
USP4-201ENST00000265560 RAB9AP51151 201 aa12.74□□□□□ -0.37
USP4-201ENST00000265560 CENPWQ5EE01 88 aa12.74□□□□□ -0.37
USP4-201ENST00000265560 TRAV8-1A0A0A6YYK1 113 aa12.74□□□□□ -0.37
USP4-201ENST00000265560 M0R3E3 92 aa12.74□□□□□ -0.37
USP4-201ENST00000265560 UNQ9165/PRO28630Q6UXU0 137 aa12.74□□□□□ -0.37
USP4-201ENST00000265560 HIST1H2BAQ96A08 127 aa12.74□□□□□ -0.37
USP4-201ENST00000265560 ZNF320A2RRD8 509 aa12.73□□□□□ -0.37
USP4-201ENST00000265560 ISLRO14498 428 aa12.73□□□□□ -0.37
USP4-201ENST00000265560 BPIFA4PQ86YQ2 179 aa12.73□□□□□ -0.37
USP4-201ENST00000265560 OR5R1Q8NH85 324 aa12.73□□□□□ -0.37
USP4-201ENST00000265560 CXCL1P09341 107 aa12.73□□□□□ -0.37
USP4-201ENST00000265560 ARL3P36405 182 aa12.73□□□□□ -0.37
USP4-201ENST00000265560 OR4X2Q8NGF9 303 aa12.73□□□□□ -0.37
USP4-201ENST00000265560 C2CD4CQ8TF44 421 aa12.73□□□□□ -0.37
USP4-201ENST00000265560 RABAC1Q9UI14 185 aa12.73□□□□□ -0.37
USP4-201ENST00000265560 CRYBA1P05813 215 aa12.73□□□□□ -0.37
USP4-201ENST00000265560 MGST1P10620 155 aaKnown RBP12.73□□□□□ -0.37
USP4-201ENST00000265560 PNRC1Q12796 327 aaPredicted RBP12.73□□□□□ -0.37
USP4-201ENST00000265560 STXBP6Q8NFX7 210 aa12.73□□□□□ -0.37
USP4-201ENST00000265560 ZFAND3Q9H8U3 227 aa12.73□□□□□ -0.37
USP4-201ENST00000265560 TRBV7-1A0A0A6YYK4 115 aa12.72□□□□□ -0.37
USP4-201ENST00000265560 RPLP1P05386 114 aaKnown RBP12.72□□□□□ -0.37
USP4-201ENST00000265560 C9orf139Q6ZV77 190 aa12.72□□□□□ -0.37
USP4-201ENST00000265560 TXN2Q99757 166 aa12.72□□□□□ -0.37
USP4-201ENST00000265560 CLPSL1A2RUU4 121 aa12.72□□□□□ -0.37
USP4-201ENST00000265560 HLA-DMBP28068 263 aa12.72□□□□□ -0.37
USP4-201ENST00000265560 GNG4P50150 75 aa12.72□□□□□ -0.37
USP4-201ENST00000265560 CRIP2P52943 208 aaPredicted RBP12.72□□□□□ -0.37
USP4-201ENST00000265560 FAM181BA6NEQ2 426 aa12.71□□□□□ -0.37
USP4-201ENST00000265560 HIST1H1EP10412 219 aaKnown RBP12.71□□□□□ -0.37
USP4-201ENST00000265560 EDN2P20800 178 aa12.71□□□□□ -0.37
USP4-201ENST00000265560 OR4F17Q8NGA8 305 aa12.71□□□□□ -0.37
USP4-201ENST00000265560 TXNDC17Q9BRA2 123 aa12.71□□□□□ -0.37
USP4-201ENST00000265560 ZNF702PQ9H963 129 aa12.71□□□□□ -0.37
USP4-201ENST00000265560 F8P00451 2351 aa12.71□□□□□ -0.37
USP4-201ENST00000265560 PEX7O00628 323 aa12.71□□□□□ -0.37
USP4-201ENST00000265560 IGLV1-40P01703 118 aa12.71□□□□□ -0.37
USP4-201ENST00000265560 FAM3BP58499 235 aaPredicted RBP12.71□□□□□ -0.37
USP4-201ENST00000265560 ELOBQ15370 118 aa12.71□□□□□ -0.37
USP4-201ENST00000265560 IGKV3-7A0A075B6H7 116 aa12.71□□□□□ -0.38
USP4-201ENST00000265560 BMPR1BO00238 502 aa12.71□□□□□ -0.38
USP4-201ENST00000265560 C11orf52Q96A22 123 aa12.71□□□□□ -0.38
USP4-201ENST00000265560 PRSS22Q9GZN4 317 aa12.71□□□□□ -0.38
USP4-201ENST00000265560 RNASE7Q9H1E1 156 aaKnown RBP12.71□□□□□ -0.38
USP4-201ENST00000265560 EPDR1Q9UM22 224 aa12.71□□□□□ -0.38
USP4-201ENST00000265560 BAHCC1Q9P281 2608 aa12.7□□□□□ -0.38
USP4-201ENST00000265560 FAM223BA6NKX1 122 aa12.7□□□□□ -0.38
USP4-201ENST00000265560 TSPAN9O75954 239 aa12.7□□□□□ -0.38
USP4-201ENST00000265560 IGLC2P0DOY2 106 aa12.7□□□□□ -0.38
USP4-201ENST00000265560 MYCNOSP40205 109 aa12.7□□□□□ -0.38
USP4-201ENST00000265560 PRR27Q6MZM9 219 aa12.7□□□□□ -0.38
USP4-201ENST00000265560 FAM223AQ8IWN6 122 aa12.7□□□□□ -0.38
USP4-201ENST00000265560 C11orf44Q8N8P7 122 aa12.7□□□□□ -0.38
USP4-201ENST00000265560 ESM1Q9NQ30 184 aa12.7□□□□□ -0.38
USP4-201ENST00000265560 SMAD5-AS1Q9Y6J3 95 aa12.7□□□□□ -0.38
USP4-201ENST00000265560 TRBV19A0A075B6N1 114 aa12.7□□□□□ -0.38
USP4-201ENST00000265560 MRPS12O15235 138 aaKnown RBP12.7□□□□□ -0.38
USP4-201ENST00000265560 MT-ND4LP03901 98 aa12.7□□□□□ -0.38
USP4-201ENST00000265560 CFHR3Q02985 330 aa12.7□□□□□ -0.38
USP4-201ENST00000265560 C2CD3Q4AC94 2353 aa12.7□□□□□ -0.38
USP4-201ENST00000265560 H7BYZ3 331 aa12.69□□□□□ -0.38
USP4-201ENST00000265560 CLDN34H7C241 214 aa12.69□□□□□ -0.38
USP4-201ENST00000265560 SCGB2A1O75556 95 aa12.69□□□□□ -0.38
USP4-201ENST00000265560 SRSF2Q01130 221 aaKnown RBP12.69□□□□□ -0.38
USP4-201ENST00000265560 GOLT1AQ6ZVE7 132 aa12.69□□□□□ -0.38
USP4-201ENST00000265560 NPFFR1Q9GZQ6 430 aa12.69□□□□□ -0.38
USP4-201ENST00000265560 A0A087WWC5 75 aa12.68□□□□□ -0.38
USP4-201ENST00000265560 B4DEV8 164 aa12.68□□□□□ -0.38
USP4-201ENST00000265560 C18orf65Q6ZTR6 163 aa12.68□□□□□ -0.38
USP4-201ENST00000265560 C15orf54Q8N8G6 183 aa12.68□□□□□ -0.38
USP4-201ENST00000265560 SFRP2Q96HF1 295 aa12.68□□□□□ -0.38
USP4-201ENST00000265560 ZNF705FA8MVS1 300 aaPredicted RBP12.68□□□□□ -0.38
USP4-201ENST00000265560 PSMB8P28062 276 aa12.68□□□□□ -0.38
USP4-201ENST00000265560 RPS10P46783 165 aaKnown RBP12.68□□□□□ -0.38
USP4-201ENST00000265560 C1QL4Q86Z23 238 aa12.68□□□□□ -0.38
USP4-201ENST00000265560 A0A1W2PPQ1 181 aa12.67□□□□□ -0.38
USP4-201ENST00000265560 DNAJC9-AS1A6NH13 148 aa12.67□□□□□ -0.38
USP4-201ENST00000265560 BUB3O43684 328 aa12.67□□□□□ -0.38
USP4-201ENST00000265560 CA1P00915 261 aaPredicted RBP12.67□□□□□ -0.38
USP4-201ENST00000265560 IGLV2-8P01709 118 aa12.67□□□□□ -0.38
USP4-201ENST00000265560 CNN1P51911 297 aaKnown RBP12.67□□□□□ -0.38
USP4-201ENST00000265560 ERVFC1-1P60608 527 aa12.67□□□□□ -0.38
USP4-201ENST00000265560 KLK9Q2XQG4 91 aa12.67□□□□□ -0.38
USP4-201ENST00000265560 SIGLEC15Q6ZMC9 328 aa12.67□□□□□ -0.38
USP4-201ENST00000265560 CMTM2Q8TAZ6 248 aa12.67□□□□□ -0.38
USP4-201ENST00000265560 TMEM14CQ9P0S9 112 aa12.67□□□□□ -0.38
USP4-201ENST00000265560 KLK9Q9UKQ9 250 aa12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 132.9 ms