RNA–Protein interactions for RNA: ENST00000264039.6

GPC1-201, Transcript of glypican 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene GPC1, Length 3,713 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC1-201ENST00000264039 CD40P25942 277 aa13.18□□□□□ -0.3
GPC1-201ENST00000264039 C2orf83Q53S99 150 aa13.18□□□□□ -0.3
GPC1-201ENST00000264039 SMRP1Q8NCR6 262 aa13.18□□□□□ -0.3
GPC1-201ENST00000264039 ZNF502Q8TBZ5 544 aa13.18□□□□□ -0.3
GPC1-201ENST00000264039 IGF2BP2-AS1Q96M15 143 aa13.18□□□□□ -0.3
GPC1-201ENST00000264039 SPAARA0A1B0GVQ0 90 aa13.18□□□□□ -0.3
GPC1-201ENST00000264039 SRRM4A7MD48 611 aaKnown RBP13.18□□□□□ -0.3
GPC1-201ENST00000264039 P0C879 139 aa13.18□□□□□ -0.3
GPC1-201ENST00000264039 IGHV1-2P23083 117 aa13.18□□□□□ -0.3
GPC1-201ENST00000264039 KIR2DL2P43627 348 aaPredicted RBP13.18□□□□□ -0.3
GPC1-201ENST00000264039 TNFAIP6P98066 277 aaPredicted RBP13.18□□□□□ -0.3
GPC1-201ENST00000264039 KLF5Q13887 457 aaPredicted RBP13.18□□□□□ -0.3
GPC1-201ENST00000264039 NRN1LQ496H8 165 aa13.18□□□□□ -0.3
GPC1-201ENST00000264039 MRPL16Q9NX20 251 aaKnown RBP13.18□□□□□ -0.3
GPC1-201ENST00000264039 VWC2LB2RUY7 222 aa13.18□□□□□ -0.3
GPC1-201ENST00000264039 CECR9P0C854 216 aa13.18□□□□□ -0.3
GPC1-201ENST00000264039 LEPP41159 167 aa13.18□□□□□ -0.3
GPC1-201ENST00000264039 ZC2HC1BQ5TFG8 222 aa13.18□□□□□ -0.3
GPC1-201ENST00000264039 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP13.17□□□□□ -0.3
GPC1-201ENST00000264039 RNASE2P10153 161 aaKnown RBP13.17□□□□□ -0.3
GPC1-201ENST00000264039 LTBRP36941 435 aa13.17□□□□□ -0.3
GPC1-201ENST00000264039 PSMB2P49721 201 aa13.17□□□□□ -0.3
GPC1-201ENST00000264039 LOXL1Q08397 574 aaPredicted RBP13.17□□□□□ -0.3
GPC1-201ENST00000264039 CD300EQ496F6 205 aaPredicted RBP13.17□□□□□ -0.3
GPC1-201ENST00000264039 FOXA2Q9Y261 457 aaPredicted RBP13.17□□□□□ -0.3
GPC1-201ENST00000264039 SPINK8P0C7L1 97 aa13.17□□□□□ -0.3
GPC1-201ENST00000264039 FXYD2P54710 66 aa13.17□□□□□ -0.3
GPC1-201ENST00000264039 OR5AN1Q8NGI8 311 aa13.17□□□□□ -0.3
GPC1-201ENST00000264039 TRGV8A0A0C4DH27 118 aa13.17□□□□□ -0.3
GPC1-201ENST00000264039 SP9P0CG40 484 aa13.17□□□□□ -0.3
GPC1-201ENST00000264039 LOXL3P58215 753 aa13.17□□□□□ -0.3
GPC1-201ENST00000264039 OR9G4Q8NGQ1 327 aa13.17□□□□□ -0.3
GPC1-201ENST00000264039 TCRBV4S1A1TA0A5B7 111 aa13.16□□□□□ -0.3
GPC1-201ENST00000264039 IQCF6A8MYZ5 107 aa13.16□□□□□ -0.3
GPC1-201ENST00000264039 COX7A1P24310 79 aa13.16□□□□□ -0.3
GPC1-201ENST00000264039 TTC9CQ8N5M4 171 aa13.16□□□□□ -0.3
GPC1-201ENST00000264039 ZNF576Q9H609 170 aa13.16□□□□□ -0.3
GPC1-201ENST00000264039 SIT1Q9Y3P8 196 aa13.16□□□□□ -0.3
GPC1-201ENST00000264039 IGKV1D-17A0A075B6S4 117 aa13.16□□□□□ -0.3
GPC1-201ENST00000264039 F2RL2O00254 374 aa13.16□□□□□ -0.3
GPC1-201ENST00000264039 RPL7P18124 248 aaKnown RBP13.16□□□□□ -0.3
GPC1-201ENST00000264039 RNF138Q8WVD3 245 aa13.16□□□□□ -0.3
GPC1-201ENST00000264039 CHAC1Q9BUX1 264 aa13.16□□□□□ -0.3
GPC1-201ENST00000264039 RPUSD1Q9UJJ7 312 aaKnown RBP13.16□□□□□ -0.3
GPC1-201ENST00000264039 DKK1O94907 266 aa13.16□□□□□ -0.3
GPC1-201ENST00000264039 CRYBA4P53673 196 aa13.16□□□□□ -0.3
GPC1-201ENST00000264039 PIEZO2Q9H5I5 2752 aa13.16□□□□□ -0.3
GPC1-201ENST00000264039 RPS20P60866 119 aaKnown RBP13.15□□□□□ -0.3
GPC1-201ENST00000264039 LYZL1Q6UWQ5 148 aa13.15□□□□□ -0.3
GPC1-201ENST00000264039 FMC1Q96HJ9 113 aa13.15□□□□□ -0.3
GPC1-201ENST00000264039 ZNF714Q96N38 554 aa13.15□□□□□ -0.3
GPC1-201ENST00000264039 TMEM14BQ9NUH8 114 aa13.15□□□□□ -0.3
GPC1-201ENST00000264039 Q1RN00 199 aa13.15□□□□□ -0.3
GPC1-201ENST00000264039 MYOZ3Q8TDC0 251 aa13.15□□□□□ -0.3
GPC1-201ENST00000264039 RPEQ96AT9 228 aa13.15□□□□□ -0.3
GPC1-201ENST00000264039 CYSLTR1Q9Y271 337 aa13.15□□□□□ -0.3
GPC1-201ENST00000264039 NEU4Q8WWR8 484 aaPredicted RBP13.15□□□□□ -0.3
GPC1-201ENST00000264039 VGLL1Q99990 258 aa13.15□□□□□ -0.3
GPC1-201ENST00000264039 IGKV3D-15A0A087WSY6 115 aa13.14□□□□□ -0.31
GPC1-201ENST00000264039 TRIP6Q15654 476 aaKnown RBP13.14□□□□□ -0.31
GPC1-201ENST00000264039 SAP25Q8TEE9 199 aa13.14□□□□□ -0.31
GPC1-201ENST00000264039 URB1-AS1Q96HZ7 61 aa13.14□□□□□ -0.31
GPC1-201ENST00000264039 IGHV3OR16-13A0A075B7E8 117 aa13.14□□□□□ -0.31
GPC1-201ENST00000264039 IGHV3-74A0A0B4J1X5 117 aa13.14□□□□□ -0.31
GPC1-201ENST00000264039 PSMB11A5LHX3 300 aa13.14□□□□□ -0.31
GPC1-201ENST00000264039 NCBP2LA6PVI3 153 aaKnown RBP13.14□□□□□ -0.31
GPC1-201ENST00000264039 NKX2-8O15522 239 aa13.14□□□□□ -0.31
GPC1-201ENST00000264039 LTAP01374 205 aa13.14□□□□□ -0.31
GPC1-201ENST00000264039 CACNG8Q8WXS5 425 aa13.14□□□□□ -0.31
GPC1-201ENST00000264039 MAP1LC3AQ9H492 121 aa13.14□□□□□ -0.31
GPC1-201ENST00000264039 SOX21Q9Y651 276 aaPredicted RBP13.14□□□□□ -0.31
GPC1-201ENST00000264039 RPL27AP46776 148 aaKnown RBP13.14□□□□□ -0.31
GPC1-201ENST00000264039 KRTAP27-1Q3LI81 207 aa13.14□□□□□ -0.31
GPC1-201ENST00000264039 FAM231DQ6ZW35 169 aa13.14□□□□□ -0.31
GPC1-201ENST00000264039 SYT8Q8NBV8 401 aa13.14□□□□□ -0.31
GPC1-201ENST00000264039 ANAPC13Q9BS18 74 aa13.14□□□□□ -0.31
GPC1-201ENST00000264039 SS18L2Q9UHA2 77 aa13.14□□□□□ -0.31
GPC1-201ENST00000264039 C2CD3Q4AC94 2353 aa13.13□□□□□ -0.31
GPC1-201ENST00000264039 NPIPB5A8MRT5 1133 aa13.13□□□□□ -0.31
GPC1-201ENST00000264039 C22orf46C9J442 243 aa13.13□□□□□ -0.31
GPC1-201ENST00000264039 LGALS7P47929 136 aa13.13□□□□□ -0.31
GPC1-201ENST00000264039 TMPRSS3P57727 454 aa13.13□□□□□ -0.31
GPC1-201ENST00000264039 RPRMLQ8N4K4 120 aa13.13□□□□□ -0.31
GPC1-201ENST00000264039 WIPF2Q8TF74 440 aaPredicted RBP13.13□□□□□ -0.31
GPC1-201ENST00000264039 DSPP15924 2871 aaKnown RBP13.13□□□□□ -0.31
GPC1-201ENST00000264039 C15orf65H3BRN8 121 aa13.13□□□□□ -0.31
GPC1-201ENST00000264039 IGFL4Q6B9Z1 124 aa13.13□□□□□ -0.31
GPC1-201ENST00000264039 MBD6Q96DN6 1003 aa13.13□□□□□ -0.31
GPC1-201ENST00000264039 SIGLEC8Q9NYZ4 499 aa13.13□□□□□ -0.31
GPC1-201ENST00000264039 RNF7Q9UBF6 113 aa13.13□□□□□ -0.31
GPC1-201ENST00000264039 LINC01545Q5VT33 79 aa13.13□□□□□ -0.31
GPC1-201ENST00000264039 FXYD5Q96DB9 178 aa13.13□□□□□ -0.31
GPC1-201ENST00000264039 C1orf159Q96HA4 380 aa13.13□□□□□ -0.31
GPC1-201ENST00000264039 FAM120AOSQ5T036 256 aa13.12□□□□□ -0.31
GPC1-201ENST00000264039 C2orf91Q6ZV80 131 aa13.12□□□□□ -0.31
GPC1-201ENST00000264039 GCSAMQ8N6F7 178 aa13.12□□□□□ -0.31
GPC1-201ENST00000264039 TMEM178AQ8NBL3 297 aa13.12□□□□□ -0.31
GPC1-201ENST00000264039 FAM167A-AS1Q96KT0 104 aa13.12□□□□□ -0.31
GPC1-201ENST00000264039 IL4P05112 153 aa13.12□□□□□ -0.31
GPC1-201ENST00000264039 PROCRQ9UNN8 238 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 90.2 ms