RNA–Protein interactions for RNA: ENST00000249440.4

HOXD3-201, Transcript of homeobox D3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXD3, Length 2,303 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3-201ENST00000249440 PGLYRP4Q96LB8 373 aa13.01□□□□□ -0.33
HOXD3-201ENST00000249440 UQCR10Q9UDW1 63 aa13.01□□□□□ -0.33
HOXD3-201ENST00000249440 CACNA1BQ00975 2339 aa13.01□□□□□ -0.33
HOXD3-201ENST00000249440 NPIPB6E9PJ23 425 aa13.01□□□□□ -0.33
HOXD3-201ENST00000249440 BPIFA4PQ86YQ2 179 aa13.01□□□□□ -0.33
HOXD3-201ENST00000249440 EXOC3-AS1Q8N2X6 119 aa13.01□□□□□ -0.33
HOXD3-201ENST00000249440 K7EIM0 57 aa13□□□□□ -0.33
HOXD3-201ENST00000249440 LY6DQ14210 128 aa13□□□□□ -0.33
HOXD3-201ENST00000249440 DPM3Q9P2X0 92 aa13□□□□□ -0.33
HOXD3-201ENST00000249440 TACC2O95359 2948 aa13□□□□□ -0.33
HOXD3-201ENST00000249440 ABCA4P78363 2273 aa13□□□□□ -0.33
HOXD3-201ENST00000249440 TRAV8-1A0A0A6YYK1 113 aa13□□□□□ -0.33
HOXD3-201ENST00000249440 NBR2O15453 112 aa13□□□□□ -0.33
HOXD3-201ENST00000249440 SIAH2O43255 324 aa13□□□□□ -0.33
HOXD3-201ENST00000249440 IGLC2P0DOY2 106 aa13□□□□□ -0.33
HOXD3-201ENST00000249440 IGLC3P0DOY3 106 aa13□□□□□ -0.33
HOXD3-201ENST00000249440 BTF3P20290 206 aaKnown RBP13□□□□□ -0.33
HOXD3-201ENST00000249440 GOLT1AQ6ZVE7 132 aa13□□□□□ -0.33
HOXD3-201ENST00000249440 PRNTQ86SH4 94 aa13□□□□□ -0.33
HOXD3-201ENST00000249440 OR4F17Q8NGA8 305 aa13□□□□□ -0.33
HOXD3-201ENST00000249440 SHANK2-AS3Q9BTD1 123 aa13□□□□□ -0.33
HOXD3-201ENST00000249440 IGLV2-11P01706 119 aa12.99□□□□□ -0.33
HOXD3-201ENST00000249440 HOXB4P17483 251 aaPredicted RBP12.99□□□□□ -0.33
HOXD3-201ENST00000249440 CEACAM3P40198 252 aa12.99□□□□□ -0.33
HOXD3-201ENST00000249440 LDLRAD2Q5SZI1 272 aa12.99□□□□□ -0.33
HOXD3-201ENST00000249440 CIARTQ8N365 385 aaPredicted RBP12.99□□□□□ -0.33
HOXD3-201ENST00000249440 OR11H6Q8NGC7 330 aa12.99□□□□□ -0.33
HOXD3-201ENST00000249440 TRBV19A0A075B6N1 114 aa12.99□□□□□ -0.33
HOXD3-201ENST00000249440 TRBV6-1A0A0K0K1D8 114 aa12.99□□□□□ -0.33
HOXD3-201ENST00000249440 A6NNC1 897 aa12.99□□□□□ -0.33
HOXD3-201ENST00000249440 ZNF25P17030 456 aaPredicted RBP12.99□□□□□ -0.33
HOXD3-201ENST00000249440 GRNP28799 593 aaKnown RBP12.99□□□□□ -0.33
HOXD3-201ENST00000249440 RAB1BQ9H0U4 201 aa12.99□□□□□ -0.33
HOXD3-201ENST00000249440 G0S2P27469 103 aa12.98□□□□□ -0.33
HOXD3-201ENST00000249440 ARF6P62330 175 aa12.98□□□□□ -0.33
HOXD3-201ENST00000249440 BATFQ16520 125 aa12.98□□□□□ -0.33
HOXD3-201ENST00000249440 EBLN2Q6P2I7 272 aa12.98□□□□□ -0.33
HOXD3-201ENST00000249440 LYPD1Q8N2G4 141 aa12.98□□□□□ -0.33
HOXD3-201ENST00000249440 TIMD4Q96H15 378 aa12.98□□□□□ -0.33
HOXD3-201ENST00000249440 TXN2Q99757 166 aa12.98□□□□□ -0.33
HOXD3-201ENST00000249440 HILPDAQ9Y5L2 63 aa12.98□□□□□ -0.33
HOXD3-201ENST00000249440 H3BRN7 92 aa12.97□□□□□ -0.33
HOXD3-201ENST00000249440 K7EQM0 130 aa12.97□□□□□ -0.33
HOXD3-201ENST00000249440 CHEK1O14757 476 aa12.97□□□□□ -0.33
HOXD3-201ENST00000249440 ZNF491Q8N8L2 437 aa12.97□□□□□ -0.33
HOXD3-201ENST00000249440 NPBQ8NG41 125 aa12.97□□□□□ -0.33
HOXD3-201ENST00000249440 RNF125Q96EQ8 232 aa12.97□□□□□ -0.33
HOXD3-201ENST00000249440 TOX4O94842 621 aa12.97□□□□□ -0.33
HOXD3-201ENST00000249440 FOXA3P55318 350 aaPredicted RBP12.97□□□□□ -0.33
HOXD3-201ENST00000249440 LCN12Q6JVE5 192 aa12.97□□□□□ -0.33
HOXD3-201ENST00000249440 TMEM75Q8N9X5 138 aa12.97□□□□□ -0.33
HOXD3-201ENST00000249440 CFHR4Q92496 578 aa12.97□□□□□ -0.33
HOXD3-201ENST00000249440 CHCHD1Q96BP2 118 aaKnown RBP12.97□□□□□ -0.33
HOXD3-201ENST00000249440 URB1-AS1Q96HZ7 61 aa12.97□□□□□ -0.33
HOXD3-201ENST00000249440 ZFP30Q9Y2G7 519 aa12.97□□□□□ -0.33
HOXD3-201ENST00000249440 C2orf70A6NJV1 201 aa12.96□□□□□ -0.33
HOXD3-201ENST00000249440 NDUFA3O95167 84 aa12.96□□□□□ -0.33
HOXD3-201ENST00000249440 ZNF124Q15973 351 aa12.96□□□□□ -0.33
HOXD3-201ENST00000249440 Q6ZN92 141 aa12.96□□□□□ -0.33
HOXD3-201ENST00000249440 S100A7AQ86SG5 101 aa12.96□□□□□ -0.33
HOXD3-201ENST00000249440 ATOH7Q8N100 152 aa12.96□□□□□ -0.33
HOXD3-201ENST00000249440 NDFIP1Q9BT67 221 aa12.96□□□□□ -0.33
HOXD3-201ENST00000249440 ARHGAP32A7KAX9 2087 aa12.96□□□□□ -0.33
HOXD3-201ENST00000249440 LRBAP50851 2863 aa12.96□□□□□ -0.33
HOXD3-201ENST00000249440 TRAV30A0A087WSZ9 112 aa12.96□□□□□ -0.34
HOXD3-201ENST00000249440 HAX1O00165 279 aa12.96□□□□□ -0.34
HOXD3-201ENST00000249440 CCL21O00585 134 aa12.96□□□□□ -0.34
HOXD3-201ENST00000249440 IL4P05112 153 aa12.96□□□□□ -0.34
HOXD3-201ENST00000249440 Q56UQ5 140 aa12.96□□□□□ -0.34
HOXD3-201ENST00000249440 PRORYQ9H606 182 aa12.96□□□□□ -0.34
HOXD3-201ENST00000249440 HNRNPA3P51991 378 aaKnown RBP12.95□□□□□ -0.34
HOXD3-201ENST00000249440 PRR31Q5SQ13 230 aa12.95□□□□□ -0.34
HOXD3-201ENST00000249440 COL5A1-AS1Q5SY13 56 aa12.95□□□□□ -0.34
HOXD3-201ENST00000249440 C16orf54Q6UWD8 224 aa12.95□□□□□ -0.34
HOXD3-201ENST00000249440 SIGLEC15Q6ZMC9 328 aa12.95□□□□□ -0.34
HOXD3-201ENST00000249440 C17orf77Q96MU5 243 aa12.95□□□□□ -0.34
HOXD3-201ENST00000249440 TRAV9-2A0A087WT02 112 aa12.95□□□□□ -0.34
HOXD3-201ENST00000249440 LOC102724200A0A096LPH7 203 aaPredicted RBP12.95□□□□□ -0.34
HOXD3-201ENST00000249440 C20orf202A1L168 122 aa12.95□□□□□ -0.34
HOXD3-201ENST00000249440 M0R1W7 72 aa12.95□□□□□ -0.34
HOXD3-201ENST00000249440 LY6HO94772 140 aa12.95□□□□□ -0.34
HOXD3-201ENST00000249440 HLA-DRB1P01911 266 aa12.95□□□□□ -0.34
HOXD3-201ENST00000249440 HES1Q14469 280 aa12.95□□□□□ -0.34
HOXD3-201ENST00000249440 TMEM70Q9BUB7 260 aa12.95□□□□□ -0.34
HOXD3-201ENST00000249440 LPAR2Q9HBW0 351 aa12.95□□□□□ -0.34
HOXD3-201ENST00000249440 GNG7O60262 68 aa12.94□□□□□ -0.34
HOXD3-201ENST00000249440 CD24P25063 80 aa12.94□□□□□ -0.34
HOXD3-201ENST00000249440 FCGR2BP31994 310 aaPredicted RBP12.94□□□□□ -0.34
HOXD3-201ENST00000249440 UCNP55089 124 aa12.94□□□□□ -0.34
HOXD3-201ENST00000249440 ZC2HC1AQ96GY0 325 aa12.94□□□□□ -0.34
HOXD3-201ENST00000249440 TMEM208Q9BTX3 173 aa12.94□□□□□ -0.34
HOXD3-201ENST00000249440 LOC105371242A0A075B767 164 aa12.94□□□□□ -0.34
HOXD3-201ENST00000249440 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP12.94□□□□□ -0.34
HOXD3-201ENST00000249440 WI2-2373I1.2A0A1W2PRP0 233 aa12.94□□□□□ -0.34
HOXD3-201ENST00000249440 APOHP02749 345 aaPredicted RBP12.94□□□□□ -0.34
HOXD3-201ENST00000249440 LINC00614P0C842 121 aa12.94□□□□□ -0.34
HOXD3-201ENST00000249440 PSG3Q16557 428 aa12.94□□□□□ -0.34
HOXD3-201ENST00000249440 C5orf64Q2M2E5 130 aa12.94□□□□□ -0.34
HOXD3-201ENST00000249440 ZNF414Q96IQ9 312 aa12.94□□□□□ -0.34
HOXD3-201ENST00000249440 PSG8Q9UQ74 426 aa12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms