RNA–Protein interactions for RNA: YLR211C

ATG38, Transcript of Homodimeric subunit of autophagy-specific PtdIns-3-kinase complex I, yeast

Gene ATG38, Length 681 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
ATG38	YLR211C	COQ6	P53318	479 aa		4.26	□□□□□ -1.73
ATG38	YLR211C	CEF1	Q03654	590 aa	Predicted RBP	4.26	□□□□□ -1.73
ATG38	YLR211C	NGL1	Q08213	363 aa	Known RBP	4.26	□□□□□ -1.73
ATG38	YLR211C	PIH1	P38768	344 aa		4.25	□□□□□ -1.73
ATG38	YLR211C	FPR3	P38911	411 aa	Known RBP	4.25	□□□□□ -1.73
ATG38	YLR211C	USA1	Q03714	838 aa		4.25	□□□□□ -1.73
ATG38	YLR211C	YAP7	Q08182	245 aa		4.25	□□□□□ -1.73
ATG38	YLR211C	SEC3	P33332	1336 aa	Known RBP	4.24	□□□□□ -1.73
ATG38	YLR211C	DGR2	P32330	852 aa		4.24	□□□□□ -1.73
ATG38	YLR211C	YEL025C	P39991	1188 aa		4.24	□□□□□ -1.73
ATG38	YLR211C	GPP2	P40106	250 aa	Known RBP	4.24	□□□□□ -1.73
ATG38	YLR211C	LTP1	P40347	161 aa		4.24	□□□□□ -1.73
ATG38	YLR211C	GLO1	P50107	326 aa		4.24	□□□□□ -1.73
ATG38	YLR211C	SAP4	P53036	818 aa		4.24	□□□□□ -1.73
ATG38	YLR211C	MRN1	Q08925	612 aa	Known RBP RIP-Chip data	4.24	□□□□□ -1.73	not detected
ATG38	YLR211C	YPL216W	Q08964	1102 aa		4.24	□□□□□ -1.73
ATG38	YLR211C	AIM41	Q12032	185 aa		4.24	□□□□□ -1.73
ATG38	YLR211C	DHR2	P36009	735 aa	Predicted RBP	4.23	□□□□□ -1.73
ATG38	YLR211C	YFL015C	P43578	164 aa		4.23	□□□□□ -1.73
ATG38	YLR211C	YDL073W	Q07454	984 aa		4.23	□□□□□ -1.73
ATG38	YLR211C	WHI2	P12611	486 aa		4.22	□□□□□ -1.73
ATG38	YLR211C	PTP1	P25044	335 aa		4.22	□□□□□ -1.73
ATG38	YLR211C	CAP1	P28495	268 aa	Known RBP	4.22	□□□□□ -1.73
ATG38	YLR211C	UBP12	P39538	1254 aa		4.22	□□□□□ -1.73
ATG38	YLR211C	EXO1	P39875	702 aa		4.22	□□□□□ -1.73
ATG38	YLR211C	BST1	P43571	1029 aa		4.22	□□□□□ -1.73
ATG38	YLR211C	IRC5	P43610	853 aa		4.22	□□□□□ -1.73
ATG38	YLR211C	NET1	P47035	1189 aa		4.22	□□□□□ -1.73
ATG38	YLR211C	ENP2	P48234	707 aa	Known RBP	4.22	□□□□□ -1.73
ATG38	YLR211C	PCL8	Q08966	492 aa		4.22	□□□□□ -1.73
ATG38	YLR211C	VPS33	P20795	691 aa		4.21	□□□□□ -1.74
ATG38	YLR211C	RNR3	P21672	869 aa	Known RBP	4.21	□□□□□ -1.74
ATG38	YLR211C	CCL1	P37366	393 aa		4.21	□□□□□ -1.74
ATG38	YLR211C	YJL193W	P39542	402 aa		4.21	□□□□□ -1.74
ATG38	YLR211C	GAT1	P43574	510 aa		4.21	□□□□□ -1.74
ATG38	YLR211C	DUG1	P43616	481 aa	Known RBP	4.21	□□□□□ -1.74
ATG38	YLR211C	RNR4	P49723	345 aa	Known RBP	4.21	□□□□□ -1.74
ATG38	YLR211C	PEF1	P53238	335 aa		4.21	□□□□□ -1.74
ATG38	YLR211C	SKY1	Q03656	742 aa		4.21	□□□□□ -1.74
ATG38	YLR211C	YPR027C	Q12079	277 aa		4.21	□□□□□ -1.74
ATG38	YLR211C	HEM1	P09950	548 aa	Predicted RBP	4.2	□□□□□ -1.74
ATG38	YLR211C	YEL076C-A	P0CX16	216 aa		4.2	□□□□□ -1.74
ATG38	YLR211C	YLR464W	P0CX17	216 aa		4.2	□□□□□ -1.74
ATG38	YLR211C	EUG1	P32474	517 aa		4.2	□□□□□ -1.74
ATG38	YLR211C	YEL076C	P39971	216 aa		4.2	□□□□□ -1.74
ATG38	YLR211C	NIT2	P47016	307 aa		4.2	□□□□□ -1.74
ATG38	YLR211C	RPC34	P32910	317 aa		4.19	□□□□□ -1.74
ATG38	YLR211C	EAF5	P39995	279 aa		4.19	□□□□□ -1.74
ATG38	YLR211C	ULP2	P40537	1034 aa	Predicted RBP	4.19	□□□□□ -1.74
ATG38	YLR211C	YOR378W	Q08902	515 aa		4.19	□□□□□ -1.74
ATG38	YLR211C	PCK1	P10963	549 aa		4.18	□□□□□ -1.74
ATG38	YLR211C	ECM32	P32644	1121 aa	Known RBP	4.18	□□□□□ -1.74
ATG38	YLR211C	BRN1	P38170	754 aa		4.18	□□□□□ -1.74
ATG38	YLR211C	SRP68	P38687	599 aa	Known RBP	4.18	□□□□□ -1.74
ATG38	YLR211C	TDA10	P42938	290 aa		4.18	□□□□□ -1.74
ATG38	YLR211C	YJL043W	P47053	257 aa		4.18	□□□□□ -1.74
ATG38	YLR211C	ATP23	P53722	227 aa		4.18	□□□□□ -1.74
ATG38	YLR211C	SQS1	P53866	767 aa	Known RBP	4.18	□□□□□ -1.74
ATG38	YLR211C	YNL092W	P53934	400 aa		4.18	□□□□□ -1.74
ATG38	YLR211C	TGS1	Q12052	315 aa		4.18	□□□□□ -1.74
ATG38	YLR211C	RGT2	Q12300	763 aa		4.18	□□□□□ -1.74
ATG38	YLR211C	RMP1	Q12530	201 aa		4.18	□□□□□ -1.74
ATG38	YLR211C	YJU2	P28320	278 aa	Predicted RBP	4.17	□□□□□ -1.74
ATG38	YLR211C	DSS4	P32601	143 aa		4.17	□□□□□ -1.74
ATG38	YLR211C	BEM3	P32873	1128 aa		4.17	□□□□□ -1.74
ATG38	YLR211C	LOT5	P34234	306 aa		4.17	□□□□□ -1.74
ATG38	YLR211C	MNT2	P53059	558 aa		4.17	□□□□□ -1.74
ATG38	YLR211C	DOS2	P54858	310 aa		4.17	□□□□□ -1.74
ATG38	YLR211C	WAR1	Q03631	944 aa		4.17	□□□□□ -1.74
ATG38	YLR211C	YLR111W	Q12528	110 aa		4.17	□□□□□ -1.74
ATG38	YLR211C	YMR084W	A2P2R3	262 aa		4.16	□□□□□ -1.74
ATG38	YLR211C	TUF1	P02992	437 aa	Known RBP	4.16	□□□□□ -1.74
ATG38	YLR211C	YPK1	P12688	680 aa	Known RBP	4.16	□□□□□ -1.74
ATG38	YLR211C	GSY2	P27472	705 aa		4.16	□□□□□ -1.74
ATG38	YLR211C	SAE2	P46946	345 aa		4.16	□□□□□ -1.74
ATG38	YLR211C	NMD5	P46970	1048 aa		4.16	□□□□□ -1.74
ATG38	YLR211C	SEC5	P89102	971 aa		4.16	□□□□□ -1.74
ATG38	YLR211C	STP1	Q00947	519 aa		4.16	□□□□□ -1.74
ATG38	YLR211C	MTD1	Q02046	320 aa	Known RBP	4.16	□□□□□ -1.74
ATG38	YLR211C	GEP3	Q08622	556 aa		4.16	□□□□□ -1.74
ATG38	YLR211C	CIR2	Q08822	631 aa		4.16	□□□□□ -1.74
ATG38	YLR211C	CWC2	Q12046	339 aa	Predicted RBP	4.16	□□□□□ -1.74
ATG38	YLR211C	RTK1	Q12100	620 aa	Predicted RBP	4.16	□□□□□ -1.74
ATG38	YLR211C	PRS5	Q12265	496 aa	Known RBP	4.16	□□□□□ -1.74
ATG38	YLR211C	VPS5	Q92331	675 aa		4.16	□□□□□ -1.74
ATG38	YLR211C	AAC1	P04710	309 aa		4.15	□□□□□ -1.75
ATG38	YLR211C	ARG1	P22768	420 aa		4.15	□□□□□ -1.75
ATG38	YLR211C	CWH43	P25618	953 aa		4.15	□□□□□ -1.75
ATG38	YLR211C	ENP1	P38333	483 aa	Known RBP	4.15	□□□□□ -1.75
ATG38	YLR211C	YEN1	P40028	759 aa		4.15	□□□□□ -1.75
ATG38	YLR211C	PEA2	P40091	420 aa		4.15	□□□□□ -1.75
ATG38	YLR211C	PSA1	P41940	361 aa	Known RBP	4.15	□□□□□ -1.75
ATG38	YLR211C	RSC9	Q03124	581 aa		4.15	□□□□□ -1.75
ATG38	YLR211C	ECM38	Q05902	660 aa	Predicted RBP	4.15	□□□□□ -1.75
ATG38	YLR211C	DIN7	Q12086	430 aa		4.15	□□□□□ -1.75
ATG38	YLR211C	URA3	P03962	267 aa		4.14	□□□□□ -1.75
ATG38	YLR211C	AEP2	P22136	580 aa		4.14	□□□□□ -1.75
ATG38	YLR211C	HEM12	P32347	362 aa	Predicted RBP	4.14	□□□□□ -1.75
ATG38	YLR211C	CDC5	P32562	705 aa		4.14	□□□□□ -1.75
ATG38	YLR211C	MAD2	P40958	196 aa		4.14	□□□□□ -1.75

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