RNA–Protein interactions for RNA: YGR072W

UPF3, Transcript of Component of the nonsense-mediated mRNA decay (NMD) pathway, yeastyeast

Gene UPF3, Length 1,164 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UPF3YGR072W ISA1Q07821 250 aaPredicted RBP3.89□□□□□ -1.79
UPF3YGR072W PSR2Q07949 397 aa3.89□□□□□ -1.79
UPF3YGR072W DIA2Q08496 732 aaPredicted RBP3.89□□□□□ -1.79
UPF3YGR072W GEP3Q08622 556 aa3.89□□□□□ -1.79
UPF3YGR072W PRP28P23394 588 aa3.88□□□□□ -1.79
UPF3YGR072W SER1P33330 395 aaKnown RBP3.88□□□□□ -1.79
UPF3YGR072W VPS27P40343 622 aaKnown RBP3.88□□□□□ -1.79
UPF3YGR072W VID28P40547 921 aa3.88□□□□□ -1.79
UPF3YGR072W TAX4P47030 604 aa3.88□□□□□ -1.79
UPF3YGR072W ASN1P49089 572 aaKnown RBP3.88□□□□□ -1.79
UPF3YGR072W PPN1Q04119 674 aa3.88□□□□□ -1.79
UPF3YGR072W ECM38Q05902 660 aaPredicted RBP3.88□□□□□ -1.79
UPF3YGR072W ULA1Q12059 462 aa3.88□□□□□ -1.79
UPF3YGR072W CHS5Q12114 671 aaKnown RBP3.88□□□□□ -1.79
UPF3YGR072W GLN4P13188 809 aaKnown RBP3.87□□□□□ -1.79
UPF3YGR072W HOP1P20050 605 aa3.87□□□□□ -1.79
UPF3YGR072W MBR1P23493 339 aa3.87□□□□□ -1.79
UPF3YGR072W PRP22P24384 1145 aaKnown RBP3.87□□□□□ -1.79
UPF3YGR072W IMG2P25642 146 aaPredicted RBP3.87□□□□□ -1.79
UPF3YGR072W PET127P32606 800 aa3.87□□□□□ -1.79
UPF3YGR072W TAF5P38129 798 aa3.87□□□□□ -1.79
UPF3YGR072W SSP120P39931 234 aaKnown RBP3.87□□□□□ -1.79
UPF3YGR072W YNL195CP40168 261 aa3.87□□□□□ -1.79
UPF3YGR072W ASK10P48361 1146 aa3.87□□□□□ -1.79
UPF3YGR072W NMA2P53204 395 aa3.87□□□□□ -1.79
UPF3YGR072W LEE1Q02799 301 aaKnown RBP3.87□□□□□ -1.79
UPF3YGR072W VBA4Q04602 768 aaKnown RBP3.87□□□□□ -1.79
UPF3YGR072W NGL1Q08213 363 aaKnown RBP3.87□□□□□ -1.79
UPF3YGR072W CWC2Q12046 339 aaPredicted RBP3.87□□□□□ -1.79
UPF3YGR072W PIF1P07271 859 aa3.86□□□□□ -1.79
UPF3YGR072W ERG20P08524 352 aaKnown RBP3.86□□□□□ -1.79
UPF3YGR072W FRS1P15624 595 aaKnown RBP3.86□□□□□ -1.79
UPF3YGR072W ACO1P19414 778 aaKnown RBP RIP-Chip data3.86□□□□□ -1.79not detected
UPF3YGR072W ATP12P22135 325 aa3.86□□□□□ -1.79
UPF3YGR072W SEC15P22224 910 aa3.86□□□□□ -1.79
UPF3YGR072W MSH1P25846 959 aa3.86□□□□□ -1.79
UPF3YGR072W SWE1P32944 819 aa3.86□□□□□ -1.79
UPF3YGR072W CTP1P38152 299 aa3.86□□□□□ -1.79
UPF3YGR072W YHL041WP38730 149 aa3.86□□□□□ -1.79
UPF3YGR072W RRP8P38961 392 aaKnown RBP3.86□□□□□ -1.79
UPF3YGR072W STL1P39932 569 aa3.86□□□□□ -1.79
UPF3YGR072W YIL092WP40497 633 aa3.86□□□□□ -1.79
UPF3YGR072W PXA1P41909 870 aa3.86□□□□□ -1.79
UPF3YGR072W MPS3P47069 682 aa3.86□□□□□ -1.79
UPF3YGR072W NSE5Q03718 556 aa3.86□□□□□ -1.79
UPF3YGR072W BUD21Q08492 214 aaPredicted RBP3.86□□□□□ -1.79
UPF3YGR072W PSF3Q12146 194 aa3.86□□□□□ -1.79
UPF3YGR072W LAM4P38800 1345 aa3.86□□□□□ -1.79
UPF3YGR072W PHO3P24031 467 aa3.85□□□□□ -1.79
UPF3YGR072W IES5P40060 125 aa3.85□□□□□ -1.79
UPF3YGR072W PMT6P42934 759 aa3.85□□□□□ -1.79
UPF3YGR072W IES1P43579 692 aa3.85□□□□□ -1.79
UPF3YGR072W IRC5P43610 853 aa3.85□□□□□ -1.79
UPF3YGR072W TEP1P53916 434 aa3.85□□□□□ -1.79
UPF3YGR072W NUR1Q12066 484 aa3.85□□□□□ -1.79
UPF3YGR072W YOL114CQ12322 202 aa3.85□□□□□ -1.79
UPF3YGR072W MDM20Q12387 796 aaKnown RBP3.85□□□□□ -1.79
UPF3YGR072W TPK2P06245 380 aa3.84□□□□□ -1.79
UPF3YGR072W YEL076C-AP0CX16 216 aa3.84□□□□□ -1.79
UPF3YGR072W YLR464WP0CX17 216 aa3.84□□□□□ -1.79
UPF3YGR072W CDC26P14724 124 aa3.84□□□□□ -1.79
UPF3YGR072W STE4P18851 423 aa3.84□□□□□ -1.79
UPF3YGR072W KIN82P25341 720 aa3.84□□□□□ -1.79
UPF3YGR072W FEN2P25621 512 aaKnown RBP3.84□□□□□ -1.79
UPF3YGR072W MF(ALPHA)2P32435 120 aa3.84□□□□□ -1.79
UPF3YGR072W HXT4P32467 576 aa3.84□□□□□ -1.79
UPF3YGR072W PET309P32522 965 aaPredicted RBP3.84□□□□□ -1.79
UPF3YGR072W TGL1P34163 548 aa3.84□□□□□ -1.79
UPF3YGR072W HOT13P36078 116 aa3.84□□□□□ -1.79
UPF3YGR072W APL3P38065 1025 aa3.84□□□□□ -1.79
UPF3YGR072W ACA1P39970 489 aa3.84□□□□□ -1.79
UPF3YGR072W YEL076CP39971 216 aa3.84□□□□□ -1.79
UPF3YGR072W KHA1P40309 873 aa3.84□□□□□ -1.79
UPF3YGR072W FAF1P40546 346 aaPredicted RBP3.84□□□□□ -1.79
UPF3YGR072W QRI7P43122 407 aa3.84□□□□□ -1.79
UPF3YGR072W RFX1P48743 811 aa3.84□□□□□ -1.79
UPF3YGR072W TAF4P50105 388 aa3.84□□□□□ -1.79
UPF3YGR072W MTD1Q02046 320 aaKnown RBP3.84□□□□□ -1.79
UPF3YGR072W YSH1Q06224 779 aaPredicted RBP3.84□□□□□ -1.79
UPF3YGR072W YPS7Q06325 596 aa3.84□□□□□ -1.79
UPF3YGR072W RKI1Q12189 258 aa3.84□□□□□ -1.79
UPF3YGR072W RPS9BP05755 195 aaKnown RBP3.83□□□□□ -1.8
UPF3YGR072W MSS18P08593 268 aa3.83□□□□□ -1.8
UPF3YGR072W YHR033WP38690 423 aa3.83□□□□□ -1.8
UPF3YGR072W PPE1P38796 400 aa3.83□□□□□ -1.8
UPF3YGR072W ULP2P40537 1034 aaPredicted RBP3.83□□□□□ -1.8
UPF3YGR072W SAP185P40856 1058 aa3.83□□□□□ -1.8
UPF3YGR072W SQS1P53866 767 aaKnown RBP3.83□□□□□ -1.8
UPF3YGR072W STP1Q00947 519 aa3.83□□□□□ -1.8
UPF3YGR072W YPL068CQ02749 293 aa3.83□□□□□ -1.8
UPF3YGR072W STP4Q07351 490 aa3.83□□□□□ -1.8
UPF3YGR072W YDL121CQ07541 149 aa3.83□□□□□ -1.8
UPF3YGR072W ARP7Q12406 477 aa3.83□□□□□ -1.8
UPF3YGR072W NKP1Q12493 238 aa3.83□□□□□ -1.8
UPF3YGR072W VPS5Q92331 675 aa3.83□□□□□ -1.8
UPF3YGR072W DBF20P32328 564 aa3.82□□□□□ -1.8
UPF3YGR072W BIT61P47041 543 aa3.82□□□□□ -1.8
UPF3YGR072W YDR179W-AQ03983 463 aa3.82□□□□□ -1.8
UPF3YGR072W HOS1Q12214 470 aa3.82□□□□□ -1.8
UPF3YGR072W POM34Q12445 299 aa3.82□□□□□ -1.8
Retrieved 100 of 5,963 RNA–protein pairs in 14.1 ms