RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 CUL5Q93034 780 aa6.45□□□□□ -1.38
SCN1A-216ENST00000637968 EPAS1Q99814 870 aa6.45□□□□□ -1.38
SCN1A-216ENST00000637968 PPP1R12CQ9BZL4 782 aa6.45□□□□□ -1.38
SCN1A-216ENST00000637968 KAT14Q9H8E8 782 aa6.45□□□□□ -1.38
SCN1A-216ENST00000637968 VIPAS39Q9H9C1 493 aa6.45□□□□□ -1.38
SCN1A-216ENST00000637968 ZFATQ9P243 1243 aa6.45□□□□□ -1.38
SCN1A-216ENST00000637968 ZFYP08048 801 aaPredicted RBP6.45□□□□□ -1.38
SCN1A-216ENST00000637968 DEUP1Q05D60 604 aa6.45□□□□□ -1.38
SCN1A-216ENST00000637968 CKAP4Q07065 602 aaKnown RBP6.45□□□□□ -1.38
SCN1A-216ENST00000637968 SEPT6Q14141 434 aa6.45□□□□□ -1.38
SCN1A-216ENST00000637968 TSR1Q2NL82 804 aaKnown RBP6.45□□□□□ -1.38
SCN1A-216ENST00000637968 CCDC93Q567U6 631 aa6.45□□□□□ -1.38
SCN1A-216ENST00000637968 AFAP1Q8N556 730 aa6.45□□□□□ -1.38
SCN1A-216ENST00000637968 ABTB1Q969K4 478 aaPredicted RBP6.45□□□□□ -1.38
SCN1A-216ENST00000637968 MMTAG2Q9BU76 263 aaKnown RBP6.45□□□□□ -1.38
SCN1A-216ENST00000637968 DNAAF2Q9NVR5 837 aaKnown RBP6.45□□□□□ -1.38
SCN1A-216ENST00000637968 TUBA8Q9NY65 449 aaPredicted RBP6.45□□□□□ -1.38
SCN1A-216ENST00000637968 MYO1AQ9UBC5 1043 aa6.45□□□□□ -1.38
SCN1A-216ENST00000637968 CUX1P39880 1505 aa6.45□□□□□ -1.38
SCN1A-216ENST00000637968 E7EVH7 732 aa6.45□□□□□ -1.38
SCN1A-216ENST00000637968 U2AF1L5P0DN76 240 aaPredicted RBP6.45□□□□□ -1.38
SCN1A-216ENST00000637968 PDHBP11177 359 aa6.45□□□□□ -1.38
SCN1A-216ENST00000637968 EIF2S2P20042 333 aaKnown RBP6.45□□□□□ -1.38
SCN1A-216ENST00000637968 GBP1P32455 592 aa6.45□□□□□ -1.38
SCN1A-216ENST00000637968 U2AF1Q01081 240 aaKnown RBP eCLIP6.45□□□□□ -1.38
SCN1A-216ENST00000637968 PDIA5Q14554 519 aa6.45□□□□□ -1.38
SCN1A-216ENST00000637968 KARSQ15046 597 aaKnown RBP6.45□□□□□ -1.38
SCN1A-216ENST00000637968 RASIP1Q5U651 963 aa6.45□□□□□ -1.38
SCN1A-216ENST00000637968 FERMT3Q86UX7 667 aa6.45□□□□□ -1.38
SCN1A-216ENST00000637968 PPFIBP1Q86W92 1011 aa6.45□□□□□ -1.38
SCN1A-216ENST00000637968 CCDC13Q8IYE1 715 aa6.45□□□□□ -1.38
SCN1A-216ENST00000637968 OR8K1Q8NGG5 319 aa6.45□□□□□ -1.38
SCN1A-216ENST00000637968 MAGEC3Q8TD91 643 aa6.45□□□□□ -1.38
SCN1A-216ENST00000637968 FGD4Q96M96 766 aa6.45□□□□□ -1.38
SCN1A-216ENST00000637968 FAM167BQ9BTA0 163 aa6.45□□□□□ -1.38
SCN1A-216ENST00000637968 LIMCH1Q9UPQ0 1083 aa6.45□□□□□ -1.38
SCN1A-216ENST00000637968 ZNF521Q96K83 1311 aa6.45□□□□□ -1.38
SCN1A-216ENST00000637968 TRIM27P14373 513 aa6.45□□□□□ -1.38
SCN1A-216ENST00000637968 CNGA1P29973 690 aa6.45□□□□□ -1.38
SCN1A-216ENST00000637968 ALDH3A1P30838 453 aa6.45□□□□□ -1.38
SCN1A-216ENST00000637968 PSMC1P62191 440 aaKnown RBP6.45□□□□□ -1.38
SCN1A-216ENST00000637968 CCDC15Q0P6D6 951 aa6.45□□□□□ -1.38
SCN1A-216ENST00000637968 DNAJC14Q6Y2X3 702 aaPredicted RBP6.45□□□□□ -1.38
SCN1A-216ENST00000637968 CPLX4Q7Z7G2 160 aa6.45□□□□□ -1.38
SCN1A-216ENST00000637968 RASEFQ8IZ41 740 aa6.45□□□□□ -1.38
SCN1A-216ENST00000637968 CACNA2D3Q8IZS8 1091 aa6.45□□□□□ -1.38
SCN1A-216ENST00000637968 LRRN4CLQ8ND94 238 aa6.45□□□□□ -1.38
SCN1A-216ENST00000637968 MAIP1Q8WWC4 291 aa6.45□□□□□ -1.38
SCN1A-216ENST00000637968 EXOC1Q9NV70 894 aa6.45□□□□□ -1.38
SCN1A-216ENST00000637968 HDAC6Q9UBN7 1215 aa6.45□□□□□ -1.38
SCN1A-216ENST00000637968 RABL2BQ9UNT1 228 aa6.45□□□□□ -1.38
SCN1A-216ENST00000637968 WDR37Q9Y2I8 494 aa6.45□□□□□ -1.38
SCN1A-216ENST00000637968 ZSCAN9O15535 394 aaPredicted RBP6.44□□□□□ -1.38
SCN1A-216ENST00000637968 SCNN1BP51168 640 aa6.44□□□□□ -1.38
SCN1A-216ENST00000637968 MAP3K9P80192 1104 aa6.44□□□□□ -1.38
SCN1A-216ENST00000637968 CUL4AQ13619 759 aa6.44□□□□□ -1.38
SCN1A-216ENST00000637968 CCDC152Q4G0S7 254 aa6.44□□□□□ -1.38
SCN1A-216ENST00000637968 BEND6Q5SZJ8 279 aaPredicted RBP6.44□□□□□ -1.38
SCN1A-216ENST00000637968 KCNV2Q8TDN2 545 aa6.44□□□□□ -1.38
SCN1A-216ENST00000637968 ZNF653Q96CK0 615 aa6.44□□□□□ -1.38
SCN1A-216ENST00000637968 OPTNQ96CV9 577 aa6.44□□□□□ -1.38
SCN1A-216ENST00000637968 CDC23Q9UJX2 597 aa6.44□□□□□ -1.38
SCN1A-216ENST00000637968 SCAF11Q99590 1463 aaKnown RBP6.44□□□□□ -1.38
SCN1A-216ENST00000637968 HIP1RO75146 1068 aa6.44□□□□□ -1.38
SCN1A-216ENST00000637968 RTN2O75298 545 aa6.44□□□□□ -1.38
SCN1A-216ENST00000637968 FLOT1O75955 427 aa6.44□□□□□ -1.38
SCN1A-216ENST00000637968 MECOMQ03112 1051 aa6.44□□□□□ -1.38
SCN1A-216ENST00000637968 TCP11L2Q8N4U5 519 aa6.44□□□□□ -1.38
SCN1A-216ENST00000637968 BHMTQ93088 406 aa6.44□□□□□ -1.38
SCN1A-216ENST00000637968 NAP1L3Q99457 506 aaPredicted RBP6.44□□□□□ -1.38
SCN1A-216ENST00000637968 ARPC5LQ9BPX5 153 aa6.44□□□□□ -1.38
SCN1A-216ENST00000637968 BUD13Q9BRD0 619 aaKnown RBP eCLIP6.44□□□□□ -1.383e-8■□□□□ 9.3
SCN1A-216ENST00000637968 RHBDL2Q9NX52 303 aa6.44□□□□□ -1.38
SCN1A-216ENST00000637968 CEP126Q9P2H0 1117 aa6.44□□□□□ -1.38
SCN1A-216ENST00000637968 PPP2R2CQ9Y2T4 447 aa6.44□□□□□ -1.38
SCN1A-216ENST00000637968 CAMSAP2Q08AD1 1489 aa6.44□□□□□ -1.38
SCN1A-216ENST00000637968 ATXN2Q99700 1313 aaKnown RBP6.44□□□□□ -1.38
SCN1A-216ENST00000637968 GJB2P29033 226 aa6.44□□□□□ -1.38
SCN1A-216ENST00000637968 UBASH3AP57075 661 aa6.44□□□□□ -1.38
SCN1A-216ENST00000637968 SLC44A4Q53GD3 710 aa6.44□□□□□ -1.38
SCN1A-216ENST00000637968 E4F1Q66K89 784 aaPredicted RBP6.44□□□□□ -1.38
SCN1A-216ENST00000637968 GRAMD4Q6IC98 578 aa6.44□□□□□ -1.38
SCN1A-216ENST00000637968 BZW1Q7L1Q6 419 aaKnown RBP6.44□□□□□ -1.38
SCN1A-216ENST00000637968 NBPF15Q8N660 670 aa6.44□□□□□ -1.38
SCN1A-216ENST00000637968 DHX58Q96C10 678 aa6.44□□□□□ -1.38
SCN1A-216ENST00000637968 C1orf115Q9H7X2 142 aa6.44□□□□□ -1.38
SCN1A-216ENST00000637968 PHF8Q9UPP1 1060 aa6.44□□□□□ -1.38
SCN1A-216ENST00000637968 IQSEC3Q9UPP2 1182 aaPredicted RBP6.44□□□□□ -1.38
SCN1A-216ENST00000637968 DMRT2Q9Y5R5 561 aa6.44□□□□□ -1.38
SCN1A-216ENST00000637968 CCDC141Q6ZP82 1450 aa6.44□□□□□ -1.38
SCN1A-216ENST00000637968 LIN7AO14910 233 aaPredicted RBP6.43□□□□□ -1.38
SCN1A-216ENST00000637968 MRPS35P82673 323 aaKnown RBP6.43□□□□□ -1.38
SCN1A-216ENST00000637968 ZNF569Q5MCW4 686 aa6.43□□□□□ -1.38
SCN1A-216ENST00000637968 TCERG1LQ5VWI1 586 aa6.43□□□□□ -1.38
SCN1A-216ENST00000637968 CACNA2D4Q7Z3S7 1137 aa6.43□□□□□ -1.38
SCN1A-216ENST00000637968 WDR75Q8IWA0 830 aaKnown RBP6.43□□□□□ -1.38
SCN1A-216ENST00000637968 IFT74Q96LB3 600 aa6.43□□□□□ -1.38
SCN1A-216ENST00000637968 YIPF2Q9BWQ6 316 aa6.43□□□□□ -1.38
SCN1A-216ENST00000637968 HAUS2Q9NVX0 235 aa6.43□□□□□ -1.38
SCN1A-216ENST00000637968 SCOCQ9UIL1 159 aa6.43□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms