RNA–Protein interactions for RNA: ENST00000636759.1

SCN1A-213, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 3,606 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-213ENST00000636759 ARMCX6Q7L4S7 300 aa7.79□□□□□ -1.16
SCN1A-213ENST00000636759 ANKRD23Q86SG2 305 aa7.79□□□□□ -1.16
SCN1A-213ENST00000636759 CCDC83Q8IWF9 413 aa7.79□□□□□ -1.16
SCN1A-213ENST00000636759 CCDC12Q8WUD4 166 aaPredicted RBP7.79□□□□□ -1.16
SCN1A-213ENST00000636759 FBXW7Q969H0 707 aa7.79□□□□□ -1.16
SCN1A-213ENST00000636759 SCLT1Q96NL6 688 aa7.79□□□□□ -1.16
SCN1A-213ENST00000636759 GOPCQ9HD26 462 aa7.79□□□□□ -1.16
SCN1A-213ENST00000636759 MRFAP1Q9Y605 127 aa7.79□□□□□ -1.16
SCN1A-213ENST00000636759 RGPD5Q99666 1765 aa7.79□□□□□ -1.16
SCN1A-213ENST00000636759 PPFIA2O75334 1257 aa7.79□□□□□ -1.16
SCN1A-213ENST00000636759 RCSD1Q6JBY9 416 aa7.79□□□□□ -1.16
SCN1A-213ENST00000636759 SPATS2Q86XZ4 545 aaKnown RBP7.79□□□□□ -1.16
SCN1A-213ENST00000636759 NGDNQ8NEJ9 315 aaKnown RBP7.79□□□□□ -1.16
SCN1A-213ENST00000636759 RABEP2Q9H5N1 569 aa7.79□□□□□ -1.16
SCN1A-213ENST00000636759 TFIP11Q9UBB9 837 aaKnown RBP7.79□□□□□ -1.16
SCN1A-213ENST00000636759 RTN2O75298 545 aa7.79□□□□□ -1.16
SCN1A-213ENST00000636759 RPSAP08865 295 aaKnown RBP7.79□□□□□ -1.16
SCN1A-213ENST00000636759 HOXC9P31274 260 aa7.79□□□□□ -1.16
SCN1A-213ENST00000636759 PDE1AP54750 535 aa7.79□□□□□ -1.16
SCN1A-213ENST00000636759 KIF4BQ2VIQ3 1234 aa7.79□□□□□ -1.16
SCN1A-213ENST00000636759 RBM43Q6ZSC3 357 aaKnown RBP7.79□□□□□ -1.16
SCN1A-213ENST00000636759 MCM10Q7L590 875 aa7.79□□□□□ -1.16
SCN1A-213ENST00000636759 KIRREL3Q8IZU9 778 aa7.79□□□□□ -1.16
SCN1A-213ENST00000636759 LARP6Q9BRS8 491 aaKnown RBP7.79□□□□□ -1.16
SCN1A-213ENST00000636759 PUF60Q9UHX1 559 aaKnown RBP7.79□□□□□ -1.16
SCN1A-213ENST00000636759 NDUFAB1O14561 156 aa7.78□□□□□ -1.16
SCN1A-213ENST00000636759 NR1I2O75469 434 aa7.78□□□□□ -1.16
SCN1A-213ENST00000636759 SLC8A1P32418 973 aa7.78□□□□□ -1.16
SCN1A-213ENST00000636759 SLC8A3P57103 927 aa7.78□□□□□ -1.16
SCN1A-213ENST00000636759 SNX1Q13596 522 aa7.78□□□□□ -1.16
SCN1A-213ENST00000636759 WLSQ5T9L3 541 aa7.78□□□□□ -1.16
SCN1A-213ENST00000636759 ARMC3Q5W041 872 aa7.78□□□□□ -1.16
SCN1A-213ENST00000636759 ARMCX5Q6P1M9 558 aa7.78□□□□□ -1.16
SCN1A-213ENST00000636759 TRIM65Q6PJ69 517 aa7.78□□□□□ -1.16
SCN1A-213ENST00000636759 CCDC73Q6ZRK6 1079 aa7.78□□□□□ -1.16
SCN1A-213ENST00000636759 SRGAP1Q7Z6B7 1085 aa7.78□□□□□ -1.16
SCN1A-213ENST00000636759 SPDYE1Q8NFV5 336 aaPredicted RBP7.78□□□□□ -1.16
SCN1A-213ENST00000636759 EYA1Q99502 592 aa7.78□□□□□ -1.16
SCN1A-213ENST00000636759 BATF3Q9NR55 127 aa7.78□□□□□ -1.16
SCN1A-213ENST00000636759 IFNKQ9P0W0 207 aa7.78□□□□□ -1.16
SCN1A-213ENST00000636759 SCN11AQ9UI33 1791 aa7.78□□□□□ -1.16
SCN1A-213ENST00000636759 ABCD1P33897 745 aa7.78□□□□□ -1.16
SCN1A-213ENST00000636759 SF3A1Q15459 793 aaKnown RBP7.78□□□□□ -1.16
SCN1A-213ENST00000636759 CCDC40Q4G0X9 1142 aa7.78□□□□□ -1.16
SCN1A-213ENST00000636759 CCDC181Q5TID7 509 aa7.78□□□□□ -1.16
SCN1A-213ENST00000636759 EPB41L2O43491 1005 aaKnown RBP7.78□□□□□ -1.16
SCN1A-213ENST00000636759 FOXO3O43524 673 aa7.78□□□□□ -1.16
SCN1A-213ENST00000636759 FSBPO95073 299 aa7.78□□□□□ -1.16
SCN1A-213ENST00000636759 RHOXF2BP0C7M4 288 aa7.78□□□□□ -1.16
SCN1A-213ENST00000636759 E2F5Q15329 346 aa7.78□□□□□ -1.16
SCN1A-213ENST00000636759 FILIP1LQ4L180 1135 aa7.78□□□□□ -1.16
SCN1A-213ENST00000636759 DRAXINQ8NBI3 349 aaPredicted RBP7.78□□□□□ -1.16
SCN1A-213ENST00000636759 DHX58Q96C10 678 aa7.78□□□□□ -1.16
SCN1A-213ENST00000636759 RHOXF2Q9BQY4 288 aa7.78□□□□□ -1.16
SCN1A-213ENST00000636759 SUGCTQ9HAC7 445 aa7.78□□□□□ -1.16
SCN1A-213ENST00000636759 HOMER3Q9NSC5 361 aa7.78□□□□□ -1.16
SCN1A-213ENST00000636759 PHF8Q9UPP1 1060 aa7.78□□□□□ -1.16
SCN1A-213ENST00000636759 SAMM50Q9Y512 469 aa7.78□□□□□ -1.16
SCN1A-213ENST00000636759 CEMIPQ8WUJ3 1361 aa7.78□□□□□ -1.16
SCN1A-213ENST00000636759 COL18A1P39060 1754 aa7.77□□□□□ -1.16
SCN1A-213ENST00000636759 HMMRO75330 724 aa7.77□□□□□ -1.17
SCN1A-213ENST00000636759 USP5P45974 858 aa7.77□□□□□ -1.17
SCN1A-213ENST00000636759 AK2P54819 239 aa7.77□□□□□ -1.17
SCN1A-213ENST00000636759 MTHFSDQ2M296 383 aaKnown RBP7.77□□□□□ -1.17
SCN1A-213ENST00000636759 FAM173BQ6P4H8 233 aa7.77□□□□□ -1.17
SCN1A-213ENST00000636759 UNC5CLQ8IV45 518 aa7.77□□□□□ -1.17
SCN1A-213ENST00000636759 TCP11Q8WWU5 503 aa7.77□□□□□ -1.17
SCN1A-213ENST00000636759 XPO4Q9C0E2 1151 aaKnown RBP7.77□□□□□ -1.17
SCN1A-213ENST00000636759 GOLGA6CA6NDK9 693 aa7.77□□□□□ -1.17
SCN1A-213ENST00000636759 GOLGA6DP0CG33 693 aa7.77□□□□□ -1.17
SCN1A-213ENST00000636759 PDE6BP35913 854 aa7.77□□□□□ -1.17
SCN1A-213ENST00000636759 FCHSD1Q86WN1 690 aa7.77□□□□□ -1.17
SCN1A-213ENST00000636759 IGSF22Q8N9C0 903 aa7.77□□□□□ -1.17
SCN1A-213ENST00000636759 ZSCAN31Q96LW9 406 aaPredicted RBP7.77□□□□□ -1.17
SCN1A-213ENST00000636759 FMNL2Q96PY5 1086 aa7.77□□□□□ -1.17
SCN1A-213ENST00000636759 CAPS2Q9BXY5 557 aa7.77□□□□□ -1.17
SCN1A-213ENST00000636759 ATP6V0A4Q9HBG4 840 aa7.77□□□□□ -1.17
SCN1A-213ENST00000636759 GOLGA6AQ9NYA3 693 aa7.77□□□□□ -1.17
SCN1A-213ENST00000636759 WDR3Q9UNX4 943 aaKnown RBP eCLIP7.77□□□□□ -1.17
SCN1A-213ENST00000636759 PNMA6EA0A0J9YXQ4 647 aa7.77□□□□□ -1.17
SCN1A-213ENST00000636759 MEFVO15553 781 aaPredicted RBP7.77□□□□□ -1.17
SCN1A-213ENST00000636759 CDKL5O76039 1030 aa7.77□□□□□ -1.17
SCN1A-213ENST00000636759 SSBP05455 408 aaKnown RBP eCLIP7.77□□□□□ -1.17
SCN1A-213ENST00000636759 IRAK1P51617 712 aa7.77□□□□□ -1.17
SCN1A-213ENST00000636759 SMTNP53814 917 aa7.77□□□□□ -1.17
SCN1A-213ENST00000636759 PPFIA1Q13136 1202 aa7.77□□□□□ -1.17
SCN1A-213ENST00000636759 KCNB1Q14721 858 aa7.77□□□□□ -1.17
SCN1A-213ENST00000636759 HHATQ5VTY9 493 aa7.77□□□□□ -1.17
SCN1A-213ENST00000636759 CAPRIN2Q6IMN6 1127 aaKnown RBP7.77□□□□□ -1.17
SCN1A-213ENST00000636759 C3orf20Q8ND61 904 aa7.77□□□□□ -1.17
SCN1A-213ENST00000636759 CCDC114Q96M63 670 aa7.77□□□□□ -1.17
SCN1A-213ENST00000636759 SH2B1Q9NRF2 756 aaPredicted RBP7.77□□□□□ -1.17
SCN1A-213ENST00000636759 RANBP1P43487 201 aa7.76□□□□□ -1.17
SCN1A-213ENST00000636759 GNGT1P63211 74 aa7.76□□□□□ -1.17
SCN1A-213ENST00000636759 SLC5A9Q2M3M2 681 aa7.76□□□□□ -1.17
SCN1A-213ENST00000636759 C1QTNF12Q5T7M4 302 aa7.76□□□□□ -1.17
SCN1A-213ENST00000636759 LEO1Q8WVC0 666 aaPredicted RBP7.76□□□□□ -1.17
SCN1A-213ENST00000636759 KDM4CQ9H3R0 1056 aa7.76□□□□□ -1.17
SCN1A-213ENST00000636759 KAT14Q9H8E8 782 aa7.76□□□□□ -1.17
SCN1A-213ENST00000636759 RAB21Q9UL25 225 aa7.76□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms