RNA–Protein interactions for RNA: ENST00000631420.1

LIMS3-206, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best)

Gene LIMS3, Length 1,580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-206ENST00000631420 PSME4Q14997 1843 aa17.71■□□□□ 0.43
LIMS3-206ENST00000631420 REC8O95072 547 aa17.71■□□□□ 0.43
LIMS3-206ENST00000631420 RHBDL3P58872 404 aa17.71■□□□□ 0.43
LIMS3-206ENST00000631420 MICALL2Q8IY33 904 aa17.71■□□□□ 0.43
LIMS3-206ENST00000631420 SDR42E1Q8WUS8 393 aa17.71■□□□□ 0.43
LIMS3-206ENST00000631420 PRMT6Q96LA8 375 aaPredicted RBP17.71■□□□□ 0.43
LIMS3-206ENST00000631420 SLC4A4Q9Y6R1 1079 aa17.71■□□□□ 0.43
LIMS3-206ENST00000631420 MYH7P12883 1935 aa17.71■□□□□ 0.43
LIMS3-206ENST00000631420 DICER1Q9UPY3 1922 aaKnown RBP17.71■□□□□ 0.43
LIMS3-206ENST00000631420 DCAF8L1A6NGE4 600 aa17.7■□□□□ 0.42
LIMS3-206ENST00000631420 ZNF280AP59817 542 aaPredicted RBP17.7■□□□□ 0.42
LIMS3-206ENST00000631420 RBM26Q5T8P6 1007 aaKnown RBP17.7■□□□□ 0.42
LIMS3-206ENST00000631420 CDC42EP5Q6NZY7 148 aa17.7■□□□□ 0.42
LIMS3-206ENST00000631420 MAP4K1Q92918 833 aa17.7■□□□□ 0.42
LIMS3-206ENST00000631420 NOL10Q9BSC4 688 aaKnown RBP17.7■□□□□ 0.42
LIMS3-206ENST00000631420 USP40Q9NVE5 1235 aa17.7■□□□□ 0.42
LIMS3-206ENST00000631420 GSG1L2A8MUP6 293 aa17.7■□□□□ 0.42
LIMS3-206ENST00000631420 PATL2C9JE40 543 aaKnown RBP17.7■□□□□ 0.42
LIMS3-206ENST00000631420 EGFRP00533 1210 aa17.7■□□□□ 0.42
LIMS3-206ENST00000631420 SAMD7Q7Z3H4 446 aa17.7■□□□□ 0.42
LIMS3-206ENST00000631420 MAST2Q6P0Q8 1798 aa17.69■□□□□ 0.42
LIMS3-206ENST00000631420 APPP05067 770 aa17.69■□□□□ 0.42
LIMS3-206ENST00000631420 DLGAP5Q15398 846 aa17.69■□□□□ 0.42
LIMS3-206ENST00000631420 DPY19L2Q6NUT2 758 aa17.69■□□□□ 0.42
LIMS3-206ENST00000631420 DSCC1Q9BVC3 393 aa17.69■□□□□ 0.42
LIMS3-206ENST00000631420 TDRD3Q9H7E2 651 aaKnown RBP17.69■□□□□ 0.42
LIMS3-206ENST00000631420 EPB41L4AQ9HCS5 686 aaPredicted RBP17.69■□□□□ 0.42
LIMS3-206ENST00000631420 MYOZ2Q9NPC6 264 aa17.69■□□□□ 0.42
LIMS3-206ENST00000631420 GPRC5DQ9NZD1 345 aa17.69■□□□□ 0.42
LIMS3-206ENST00000631420 RBM8AQ9Y5S9 174 aaKnown RBP17.69■□□□□ 0.42
LIMS3-206ENST00000631420 SPDYE2BA6NHP3 402 aa17.68■□□□□ 0.42
LIMS3-206ENST00000631420 FGAP02671 866 aa17.68■□□□□ 0.42
LIMS3-206ENST00000631420 SPDYE6P0CI01 402 aa17.68■□□□□ 0.42
LIMS3-206ENST00000631420 EPS15P42566 896 aa17.68■□□□□ 0.42
LIMS3-206ENST00000631420 TEX11Q8IYF3 940 aa17.68■□□□□ 0.42
LIMS3-206ENST00000631420 IFNL3Q8IZI9 196 aa17.68■□□□□ 0.42
LIMS3-206ENST00000631420 TGFBRAP1Q8WUH2 860 aa17.68■□□□□ 0.42
LIMS3-206ENST00000631420 ZBED3Q96IU2 234 aaPredicted RBP17.68■□□□□ 0.42
LIMS3-206ENST00000631420 CRNKL1Q9BZJ0 848 aaKnown RBP17.68■□□□□ 0.42
LIMS3-206ENST00000631420 MYH2Q9UKX2 1941 aa17.68■□□□□ 0.42
LIMS3-206ENST00000631420 GLTPD2A6NH11 291 aa17.67■□□□□ 0.42
LIMS3-206ENST00000631420 GNAT2P19087 354 aa17.67■□□□□ 0.42
LIMS3-206ENST00000631420 NBPF9Q3BBW0 867 aa17.67■□□□□ 0.42
LIMS3-206ENST00000631420 TBC1D10BQ4KMP7 808 aaPredicted RBP17.67■□□□□ 0.42
LIMS3-206ENST00000631420 MTMR14Q8NCE2 650 aa17.67■□□□□ 0.42
LIMS3-206ENST00000631420 ADAMTSL1Q8N6G6 1762 aa17.67■□□□□ 0.42
LIMS3-206ENST00000631420 ZC3H4Q9UPT8 1303 aaKnown RBP17.67■□□□□ 0.42
LIMS3-206ENST00000631420 H7C1D1 291 aa17.66■□□□□ 0.42
LIMS3-206ENST00000631420 WNT10BO00744 389 aa17.66■□□□□ 0.42
LIMS3-206ENST00000631420 EIF5BO60841 1220 aaKnown RBP17.66■□□□□ 0.42
LIMS3-206ENST00000631420 PLCG2P16885 1265 aa17.66■□□□□ 0.42
LIMS3-206ENST00000631420 CACNB3P54284 484 aa17.66■□□□□ 0.42
LIMS3-206ENST00000631420 NECTIN1Q15223 517 aa17.66■□□□□ 0.42
LIMS3-206ENST00000631420 MAPKAPK5Q8IW41 473 aa17.66■□□□□ 0.42
LIMS3-206ENST00000631420 C22orf23Q9BZE7 217 aa17.66■□□□□ 0.42
LIMS3-206ENST00000631420 DCP1AQ9NPI6 582 aaPredicted RBP17.66■□□□□ 0.42
LIMS3-206ENST00000631420 TIAM2Q8IVF5 1701 aa17.66■□□□□ 0.42
LIMS3-206ENST00000631420 CLRN2A0PK11 232 aa17.66■□□□□ 0.42
LIMS3-206ENST00000631420 WDHD1O75717 1129 aaPredicted RBP17.66■□□□□ 0.42
LIMS3-206ENST00000631420 USP5P45974 858 aa17.66■□□□□ 0.42
LIMS3-206ENST00000631420 MMP14P50281 582 aa17.66■□□□□ 0.42
LIMS3-206ENST00000631420 NFIAQ12857 509 aa17.66■□□□□ 0.42
LIMS3-206ENST00000631420 DDX4Q9NQI0 724 aaKnown RBP17.66■□□□□ 0.42
LIMS3-206ENST00000631420 U3KPZ7 1027 aaPredicted RBP17.66■□□□□ 0.42
LIMS3-206ENST00000631420 ALX1Q15699 326 aa17.65■□□□□ 0.42
LIMS3-206ENST00000631420 CERS3Q8IU89 383 aa17.65■□□□□ 0.42
LIMS3-206ENST00000631420 TRPM4Q8TD43 1214 aa17.65■□□□□ 0.42
LIMS3-206ENST00000631420 UPF2Q9HAU5 1272 aaKnown RBP17.65■□□□□ 0.42
LIMS3-206ENST00000631420 ZNF70Q9UC06 446 aaPredicted RBP17.65■□□□□ 0.42
LIMS3-206ENST00000631420 MKRN1Q9UHC7 482 aaKnown RBP17.65■□□□□ 0.42
LIMS3-206ENST00000631420 PALD1Q9ULE6 856 aa17.65■□□□□ 0.42
LIMS3-206ENST00000631420 ASTN2O75129 1339 aaPredicted RBP17.64■□□□□ 0.42
LIMS3-206ENST00000631420 SMIM22K7EJ46 135 aa17.64■□□□□ 0.41
LIMS3-206ENST00000631420 EPB41L2O43491 1005 aaKnown RBP17.64■□□□□ 0.41
LIMS3-206ENST00000631420 HSPA4P34932 840 aa17.64■□□□□ 0.41
LIMS3-206ENST00000631420 HIRAP54198 1017 aaPredicted RBP17.64■□□□□ 0.41
LIMS3-206ENST00000631420 PICALMQ13492 652 aa17.64■□□□□ 0.41
LIMS3-206ENST00000631420 KIF4BQ2VIQ3 1234 aa17.64■□□□□ 0.41
LIMS3-206ENST00000631420 RASEFQ8IZ41 740 aa17.64■□□□□ 0.41
LIMS3-206ENST00000631420 NAPBQ9H115 298 aa17.64■□□□□ 0.41
LIMS3-206ENST00000631420 ATP8A2Q9NTI2 1148 aa17.64■□□□□ 0.41
LIMS3-206ENST00000631420 TAF6LQ9Y6J9 622 aa17.64■□□□□ 0.41
LIMS3-206ENST00000631420 RPAP1Q9BWH6 1393 aaPredicted RBP17.63■□□□□ 0.41
LIMS3-206ENST00000631420 CYP2D7A0A087X1C5 515 aa17.63■□□□□ 0.41
LIMS3-206ENST00000631420 SLC27A2O14975 620 aa17.63■□□□□ 0.41
LIMS3-206ENST00000631420 TDO2P48775 406 aa17.63■□□□□ 0.41
LIMS3-206ENST00000631420 EVX2Q03828 476 aa17.63■□□□□ 0.41
LIMS3-206ENST00000631420 CREB3L3Q68CJ9 461 aa17.63■□□□□ 0.41
LIMS3-206ENST00000631420 ZFPM1Q8IX07 1006 aa17.63■□□□□ 0.41
LIMS3-206ENST00000631420 L3MBTL3Q96JM7 780 aaPredicted RBP17.63■□□□□ 0.41
LIMS3-206ENST00000631420 TBC1D32Q96NH3 1257 aa17.63■□□□□ 0.41
LIMS3-206ENST00000631420 NACAP1Q9BZK3 213 aa17.63■□□□□ 0.41
LIMS3-206ENST00000631420 FAM198AQ9UFP1 575 aa17.63■□□□□ 0.41
LIMS3-206ENST00000631420 POTECB2RU33 542 aa17.62■□□□□ 0.41
LIMS3-206ENST00000631420 USP17L12C9JPN9 530 aa17.62■□□□□ 0.41
LIMS3-206ENST00000631420 USP17L21D6R901 530 aa17.62■□□□□ 0.41
LIMS3-206ENST00000631420 CYP21A2P08686 494 aa17.62■□□□□ 0.41
LIMS3-206ENST00000631420 LMOD1P29536 600 aaPredicted RBP17.62■□□□□ 0.41
LIMS3-206ENST00000631420 HAND2P61296 217 aa17.62■□□□□ 0.41
LIMS3-206ENST00000631420 SLC4A8Q2Y0W8 1093 aa17.62■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms