RNA–Protein interactions for RNA: ENST00000625216.2

PNKP-217, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-217ENST00000625216 TMEM39BQ9GZU3 492 aa15.53■□□□□ 0.08
PNKP-217ENST00000625216 GPR108Q9NPR9 543 aa15.53■□□□□ 0.08
PNKP-217ENST00000625216 MANSC4A6NHS7 340 aaPredicted RBP15.52■□□□□ 0.08
PNKP-217ENST00000625216 PRDX5P30044 214 aa15.52■□□□□ 0.08
PNKP-217ENST00000625216 GORABQ5T7V8 394 aa15.52■□□□□ 0.08
PNKP-217ENST00000625216 SLF2Q8IX21 1173 aa15.52■□□□□ 0.08
PNKP-217ENST00000625216 RWDD1Q9H446 243 aaPredicted RBP15.52■□□□□ 0.08
PNKP-217ENST00000625216 FZD1Q9UP38 647 aa15.52■□□□□ 0.08
PNKP-217ENST00000625216 SSC5DA1L4H1 1573 aa15.52■□□□□ 0.07
PNKP-217ENST00000625216 CAPN15O75808 1086 aa15.51■□□□□ 0.07
PNKP-217ENST00000625216 ALDH1A1P00352 501 aa15.51■□□□□ 0.07
PNKP-217ENST00000625216 RASGRF1Q13972 1273 aa15.51■□□□□ 0.07
PNKP-217ENST00000625216 FAM163AQ96GL9 167 aaPredicted RBP15.51■□□□□ 0.07
PNKP-217ENST00000625216 WNK4Q96J92 1243 aa15.51■□□□□ 0.07
PNKP-217ENST00000625216 CLMNQ96JQ2 1002 aa15.51■□□□□ 0.07
PNKP-217ENST00000625216 NOP58Q9Y2X3 529 aaKnown RBP15.51■□□□□ 0.07
PNKP-217ENST00000625216 DAGLAQ9Y4D2 1042 aa15.51■□□□□ 0.07
PNKP-217ENST00000625216 CACNB3P54284 484 aa15.5■□□□□ 0.07
PNKP-217ENST00000625216 MAP3K9P80192 1104 aa15.5■□□□□ 0.07
PNKP-217ENST00000625216 MKRN3Q13064 507 aaKnown RBP15.5■□□□□ 0.07
PNKP-217ENST00000625216 DIXDC1Q155Q3 683 aa15.5■□□□□ 0.07
PNKP-217ENST00000625216 NOM1Q5C9Z4 860 aaKnown RBP15.5■□□□□ 0.07
PNKP-217ENST00000625216 CDC42EP5Q6NZY7 148 aa15.5■□□□□ 0.07
PNKP-217ENST00000625216 FAM151AQ8WW52 585 aa15.5■□□□□ 0.07
PNKP-217ENST00000625216 ABHD8Q96I13 439 aa15.5■□□□□ 0.07
PNKP-217ENST00000625216 CFHR5Q9BXR6 569 aa15.5■□□□□ 0.07
PNKP-217ENST00000625216 ARAP2Q8WZ64 1704 aa15.49■□□□□ 0.07
PNKP-217ENST00000625216 SURF6O75683 361 aaKnown RBP15.49■□□□□ 0.07
PNKP-217ENST00000625216 UQCRFS1P1P0C7P4 283 aa15.49■□□□□ 0.07
PNKP-217ENST00000625216 OS9Q13438 667 aaPredicted RBP15.49■□□□□ 0.07
PNKP-217ENST00000625216 DCAF15Q66K64 600 aa15.49■□□□□ 0.07
PNKP-217ENST00000625216 SKAP1Q86WV1 359 aa15.49■□□□□ 0.07
PNKP-217ENST00000625216 DZIP1Q86YF9 867 aaKnown RBP15.49■□□□□ 0.07
PNKP-217ENST00000625216 RPAP2Q8IXW5 612 aaPredicted RBP15.49■□□□□ 0.07
PNKP-217ENST00000625216 ABCF2Q9UG63 623 aa15.49■□□□□ 0.07
PNKP-217ENST00000625216 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP15.49■□□□□ 0.07
PNKP-217ENST00000625216 ECM29Q5VYK3 1845 aa15.49■□□□□ 0.07
PNKP-217ENST00000625216 RPAP1Q9BWH6 1393 aaPredicted RBP15.49■□□□□ 0.07
PNKP-217ENST00000625216 ARID4AP29374 1257 aaPredicted RBP15.48■□□□□ 0.07
PNKP-217ENST00000625216 OTUD7BQ6GQQ9 843 aa15.48■□□□□ 0.07
PNKP-217ENST00000625216 PPP1R3FQ6ZSY5 799 aaPredicted RBP15.48■□□□□ 0.07
PNKP-217ENST00000625216 ERICH6Q7L0X2 663 aa15.48■□□□□ 0.07
PNKP-217ENST00000625216 CDAN1Q8IWY9 1227 aa15.48■□□□□ 0.07
PNKP-217ENST00000625216 SMC5Q8IY18 1101 aa15.48■□□□□ 0.07
PNKP-217ENST00000625216 SPATA5Q8NB90 893 aa15.48■□□□□ 0.07
PNKP-217ENST00000625216 DDX55Q8NHQ9 600 aaKnown RBP eCLIP15.48■□□□□ 0.073e-6■■■■■ 38.3
PNKP-217ENST00000625216 USP40Q9NVE5 1235 aa15.48■□□□□ 0.07
PNKP-217ENST00000625216 HMG20BQ9P0W2 317 aa15.48■□□□□ 0.07
PNKP-217ENST00000625216 CSADQ9Y600 493 aa15.48■□□□□ 0.07
PNKP-217ENST00000625216 GAKO14976 1311 aa15.47■□□□□ 0.07
PNKP-217ENST00000625216 TESPA1A2RU30 521 aaPredicted RBP15.47■□□□□ 0.07
PNKP-217ENST00000625216 IGSF3O75054 1194 aa15.47■□□□□ 0.07
PNKP-217ENST00000625216 TBC1D8O95759 1140 aa15.47■□□□□ 0.07
PNKP-217ENST00000625216 DGKZQ13574 1117 aa15.47■□□□□ 0.07
PNKP-217ENST00000625216 TNNI3KQ59H18 835 aa15.47■□□□□ 0.07
PNKP-217ENST00000625216 CCDC158Q5M9N0 1113 aa15.47■□□□□ 0.07
PNKP-217ENST00000625216 IFNL1Q8IU54 200 aa15.47■□□□□ 0.07
PNKP-217ENST00000625216 IDI2Q9BXS1 227 aa15.47■□□□□ 0.07
PNKP-217ENST00000625216 MCOLN1Q9GZU1 580 aa15.47■□□□□ 0.07
PNKP-217ENST00000625216 FPGT-TNNI3KV9GXZ4 949 aa15.47■□□□□ 0.07
PNKP-217ENST00000625216 MAP4K4O95819 1239 aaPredicted RBP15.46■□□□□ 0.07
PNKP-217ENST00000625216 LDHCP07864 332 aa15.46■□□□□ 0.07
PNKP-217ENST00000625216 GSTO1P78417 241 aa15.46■□□□□ 0.07
PNKP-217ENST00000625216 OPTNQ96CV9 577 aa15.46■□□□□ 0.07
PNKP-217ENST00000625216 ZNF512BQ96KM6 892 aaPredicted RBP15.46■□□□□ 0.07
PNKP-217ENST00000625216 ZNF341Q9BYN7 854 aa15.46■□□□□ 0.07
PNKP-217ENST00000625216 ELP3Q9H9T3 547 aa15.46■□□□□ 0.07
PNKP-217ENST00000625216 ZBTB4Q9P1Z0 1013 aaPredicted RBP15.46■□□□□ 0.07
PNKP-217ENST00000625216 GPR25O00155 361 aa15.45■□□□□ 0.06
PNKP-217ENST00000625216 ENTPD3O75355 529 aa15.45■□□□□ 0.06
PNKP-217ENST00000625216 GJA5P36382 358 aa15.45■□□□□ 0.06
PNKP-217ENST00000625216 VGLL4Q14135 290 aa15.45■□□□□ 0.06
PNKP-217ENST00000625216 HSP90AB4PQ58FF6 505 aa15.45■□□□□ 0.06
PNKP-217ENST00000625216 CTU1Q7Z7A3 348 aaKnown RBP15.45■□□□□ 0.06
PNKP-217ENST00000625216 ERC1Q8IUD2 1116 aa15.45■□□□□ 0.06
PNKP-217ENST00000625216 FAM198AQ9UFP1 575 aa15.45■□□□□ 0.06
PNKP-217ENST00000625216 GPR75-ASB3A0A0A6YYF3 556 aa15.44■□□□□ 0.06
PNKP-217ENST00000625216 SPDYE5A6NIY4 337 aa15.44■□□□□ 0.06
PNKP-217ENST00000625216 GTF2A2P52657 109 aa15.44■□□□□ 0.06
PNKP-217ENST00000625216 MECOMQ03112 1051 aa15.44■□□□□ 0.06
PNKP-217ENST00000625216 TCP10Q12799 353 aa15.44■□□□□ 0.06
PNKP-217ENST00000625216 NFIAQ12857 509 aa15.44■□□□□ 0.06
PNKP-217ENST00000625216 PKN2Q16513 984 aaKnown RBP15.44■□□□□ 0.06
PNKP-217ENST00000625216 TTC39AQ5SRH9 613 aa15.44■□□□□ 0.06
PNKP-217ENST00000625216 ERO1BQ86YB8 467 aa15.44■□□□□ 0.06
PNKP-217ENST00000625216 ZNF296Q8WUU4 475 aaPredicted RBP15.44■□□□□ 0.06
PNKP-217ENST00000625216 WRNIP1Q96S55 665 aa15.44■□□□□ 0.06
PNKP-217ENST00000625216 DCTPP1Q9H773 170 aa15.44■□□□□ 0.06
PNKP-217ENST00000625216 MROH7-TTC4A0A0A0MT08 1334 aa15.43■□□□□ 0.06
PNKP-217ENST00000625216 HMMRO75330 724 aa15.43■□□□□ 0.06
PNKP-217ENST00000625216 NPM3O75607 178 aaKnown RBP15.43■□□□□ 0.06
PNKP-217ENST00000625216 MCAMP43121 646 aa15.43■□□□□ 0.06
PNKP-217ENST00000625216 BTDP43251 543 aa15.43■□□□□ 0.06
PNKP-217ENST00000625216 NSUN4Q96CB9 384 aaKnown RBP15.43■□□□□ 0.06
PNKP-217ENST00000625216 GCC1Q96CN9 775 aa15.43■□□□□ 0.06
PNKP-217ENST00000625216 MS4A4AQ96JQ5 239 aa15.43■□□□□ 0.06
PNKP-217ENST00000625216 DBNDD2Q9BQY9 259 aa15.43■□□□□ 0.06
PNKP-217ENST00000625216 LRP2BPQ9P2M1 347 aa15.43■□□□□ 0.06
PNKP-217ENST00000625216 ZNF112Q9UJU3 913 aa15.43■□□□□ 0.06
PNKP-217ENST00000625216 AKAP11Q9UKA4 1901 aa15.43■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms