RNA–Protein interactions for RNA: ENST00000621814.4

CCDC88A-214, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5 BASIC

Gene CCDC88A, Length 3,089 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-214ENST00000621814 TMC6Q7Z403 805 aa14.98□□□□□ -0.01
CCDC88A-214ENST00000621814 BRAPQ7Z569 592 aa14.98□□□□□ -0.01
CCDC88A-214ENST00000621814 MRFAP1L1Q96HT8 127 aa14.98□□□□□ -0.01
CCDC88A-214ENST00000621814 UBN2Q6ZU65 1347 aa14.98□□□□□ -0.01
CCDC88A-214ENST00000621814 GTF2F1P35269 517 aaKnown RBP eCLIP14.98□□□□□ -0.017e-11■■■■□ 23.4
CCDC88A-214ENST00000621814 CEP135Q66GS9 1140 aa14.98□□□□□ -0.01
CCDC88A-214ENST00000621814 PDCL2Q8N4E4 241 aa14.98□□□□□ -0.01
CCDC88A-214ENST00000621814 SPATA5Q8NB90 893 aa14.98□□□□□ -0.01
CCDC88A-214ENST00000621814 XPO4Q9C0E2 1151 aaKnown RBP14.98□□□□□ -0.01
CCDC88A-214ENST00000621814 ZSWIM5Q9P217 1185 aa14.98□□□□□ -0.01
CCDC88A-214ENST00000621814 SLC12A7Q9Y666 1083 aa14.98□□□□□ -0.01
CCDC88A-214ENST00000621814 SH2B2O14492 632 aaPredicted RBP14.98□□□□□ -0.01
CCDC88A-214ENST00000621814 NPHP1O15259 732 aa14.98□□□□□ -0.01
CCDC88A-214ENST00000621814 SYKP43405 635 aa14.98□□□□□ -0.01
CCDC88A-214ENST00000621814 TDO2P48775 406 aa14.98□□□□□ -0.01
CCDC88A-214ENST00000621814 BCAMP50895 628 aa14.98□□□□□ -0.01
CCDC88A-214ENST00000621814 CCDC112Q8NEF3 446 aa14.98□□□□□ -0.01
CCDC88A-214ENST00000621814 NUP133Q8WUM0 1156 aa14.98□□□□□ -0.01
CCDC88A-214ENST00000621814 TJP1Q07157 1748 aa14.97□□□□□ -0.01
CCDC88A-214ENST00000621814 MROH7-TTC4A0A0A0MT08 1334 aa14.97□□□□□ -0.01
CCDC88A-214ENST00000621814 A0A1W2PQ27 194 aa14.97□□□□□ -0.01
CCDC88A-214ENST00000621814 A0A1W2PQ64 194 aa14.97□□□□□ -0.01
CCDC88A-214ENST00000621814 A0A1W2PQD8 194 aa14.97□□□□□ -0.01
CCDC88A-214ENST00000621814 EXOC5O00471 708 aa14.97□□□□□ -0.01
CCDC88A-214ENST00000621814 YEATS4O95619 227 aa14.97□□□□□ -0.01
CCDC88A-214ENST00000621814 RASGRF1Q13972 1273 aa14.97□□□□□ -0.01
CCDC88A-214ENST00000621814 PUM3Q15397 648 aaKnown RBP14.97□□□□□ -0.01
CCDC88A-214ENST00000621814 SARM1Q6SZW1 724 aa14.97□□□□□ -0.01
CCDC88A-214ENST00000621814 VGLL2Q8N8G2 317 aa14.97□□□□□ -0.01
CCDC88A-214ENST00000621814 STRBPQ96SI9 672 aaKnown RBP14.97□□□□□ -0.01
CCDC88A-214ENST00000621814 ZMYM6O95789 1325 aa14.97□□□□□ -0.01
CCDC88A-214ENST00000621814 PNOCQ13519 176 aa14.97□□□□□ -0.01
CCDC88A-214ENST00000621814 IFNL3Q8IZI9 196 aa14.97□□□□□ -0.01
CCDC88A-214ENST00000621814 ABCF2Q9UG63 623 aa14.97□□□□□ -0.01
CCDC88A-214ENST00000621814 KCNJ14Q9UNX9 436 aa14.97□□□□□ -0.01
CCDC88A-214ENST00000621814 LAMB4A4D0S4 1761 aa14.97□□□□□ -0.01
CCDC88A-214ENST00000621814 PTPN14Q15678 1187 aa14.96□□□□□ -0.01
CCDC88A-214ENST00000621814 SUSD4Q5VX71 490 aa14.96□□□□□ -0.01
CCDC88A-214ENST00000621814 LPIN2Q92539 896 aa14.96□□□□□ -0.01
CCDC88A-214ENST00000621814 TNS2Q63HR2 1409 aa14.96□□□□□ -0.01
CCDC88A-214ENST00000621814 MAP3K12Q12852 859 aa14.96□□□□□ -0.01
CCDC88A-214ENST00000621814 UBE3CQ15386 1083 aa14.96□□□□□ -0.01
CCDC88A-214ENST00000621814 AXDND1Q5T1B0 1012 aaPredicted RBP14.96□□□□□ -0.01
CCDC88A-214ENST00000621814 FBXL16Q8N461 479 aa14.96□□□□□ -0.01
CCDC88A-214ENST00000621814 CCDC94Q9BW85 323 aaPredicted RBP14.96□□□□□ -0.01
CCDC88A-214ENST00000621814 LRP2BPQ9P2M1 347 aa14.96□□□□□ -0.01
CCDC88A-214ENST00000621814 MINDY4BA8MYZ0 360 aa14.96□□□□□ -0.02
CCDC88A-214ENST00000621814 RANBP6O60518 1105 aaKnown RBP14.96□□□□□ -0.02
CCDC88A-214ENST00000621814 CDKL5O76039 1030 aa14.96□□□□□ -0.02
CCDC88A-214ENST00000621814 ATP1A3P13637 1013 aa14.96□□□□□ -0.02
CCDC88A-214ENST00000621814 U2AF2P26368 475 aaKnown RBP eCLIP14.96□□□□□ -0.02
CCDC88A-214ENST00000621814 CDC25BP30305 580 aa14.96□□□□□ -0.02
CCDC88A-214ENST00000621814 GUCY1A2P33402 732 aa14.96□□□□□ -0.02
CCDC88A-214ENST00000621814 IGDCC4Q8TDY8 1250 aa14.96□□□□□ -0.02
CCDC88A-214ENST00000621814 EPB41L4AQ9HCS5 686 aaPredicted RBP14.96□□□□□ -0.02
CCDC88A-214ENST00000621814 SLC4A4Q9Y6R1 1079 aa14.96□□□□□ -0.02
CCDC88A-214ENST00000621814 SLC5A1P13866 664 aa14.95□□□□□ -0.02
CCDC88A-214ENST00000621814 SLC39A14Q15043 492 aa14.95□□□□□ -0.02
CCDC88A-214ENST00000621814 CDHR2Q9BYE9 1310 aa14.95□□□□□ -0.02
CCDC88A-214ENST00000621814 UQCRFS1P1P0C7P4 283 aa14.95□□□□□ -0.02
CCDC88A-214ENST00000621814 SHC4Q6S5L8 630 aa14.95□□□□□ -0.02
CCDC88A-214ENST00000621814 MFSD6Q6ZSS7 791 aa14.95□□□□□ -0.02
CCDC88A-214ENST00000621814 NBPF11Q86T75 865 aa14.95□□□□□ -0.02
CCDC88A-214ENST00000621814 TICAM2Q86XR7 235 aa14.95□□□□□ -0.02
CCDC88A-214ENST00000621814 LY9Q9HBG7 655 aa14.95□□□□□ -0.02
CCDC88A-214ENST00000621814 NUP188Q5SRE5 1749 aa14.95□□□□□ -0.02
CCDC88A-214ENST00000621814 BTBD18B2RXH4 712 aa14.94□□□□□ -0.02
CCDC88A-214ENST00000621814 CMA1P23946 247 aa14.94□□□□□ -0.02
CCDC88A-214ENST00000621814 SSRP1Q08945 709 aaKnown RBP14.94□□□□□ -0.02
CCDC88A-214ENST00000621814 LCORLQ8N3X6 602 aa14.94□□□□□ -0.02
CCDC88A-214ENST00000621814 TACC3Q9Y6A5 838 aa14.94□□□□□ -0.02
CCDC88A-214ENST00000621814 WTIPA6NIX2 430 aaPredicted RBP14.94□□□□□ -0.02
CCDC88A-214ENST00000621814 PATL2C9JE40 543 aaKnown RBP14.94□□□□□ -0.02
CCDC88A-214ENST00000621814 SERPINC1P01008 464 aa14.94□□□□□ -0.02
CCDC88A-214ENST00000621814 TPM4P67936 248 aa14.94□□□□□ -0.02
CCDC88A-214ENST00000621814 hCG_1642624A0A1W2PR95 340 aa14.94□□□□□ -0.02
CCDC88A-214ENST00000621814 TCRBV5S4A2TA0A5A2 114 aa14.94□□□□□ -0.02
CCDC88A-214ENST00000621814 SMTNL1A8MU46 457 aa14.94□□□□□ -0.02
CCDC88A-214ENST00000621814 SMIM22K7EJ46 135 aa14.94□□□□□ -0.02
CCDC88A-214ENST00000621814 ATP6V1AP38606 617 aa14.94□□□□□ -0.02
CCDC88A-214ENST00000621814 NLRP12P59046 1061 aa14.94□□□□□ -0.02
CCDC88A-214ENST00000621814 CCZ1BP86790 482 aa14.94□□□□□ -0.02
CCDC88A-214ENST00000621814 CCZ1P86791 482 aaPredicted RBP14.94□□□□□ -0.02
CCDC88A-214ENST00000621814 GOLGA8FQ08AF8 430 aa14.94□□□□□ -0.02
CCDC88A-214ENST00000621814 GOLGA8DPQ0D2H9 430 aa14.94□□□□□ -0.02
CCDC88A-214ENST00000621814 PDILTQ8N807 584 aa14.94□□□□□ -0.02
CCDC88A-214ENST00000621814 SDR42E1Q8WUS8 393 aa14.94□□□□□ -0.02
CCDC88A-214ENST00000621814 FOXN1O15353 648 aa14.93□□□□□ -0.02
CCDC88A-214ENST00000621814 ADAMTS2O95450 1211 aa14.93□□□□□ -0.02
CCDC88A-214ENST00000621814 LONRF3Q496Y0 759 aa14.93□□□□□ -0.02
CCDC88A-214ENST00000621814 ABCC6O95255 1503 aa14.93□□□□□ -0.02
CCDC88A-214ENST00000621814 PARP4Q9UKK3 1724 aaKnown RBP14.93□□□□□ -0.02
CCDC88A-214ENST00000621814 CNNM3Q8NE01 707 aa14.93□□□□□ -0.02
CCDC88A-214ENST00000621814 FAM217BQ9NTX9 383 aaPredicted RBP14.93□□□□□ -0.02
CCDC88A-214ENST00000621814 NWD2Q9ULI1 1742 aa14.93□□□□□ -0.02
CCDC88A-214ENST00000621814 ARID4AP29374 1257 aaPredicted RBP14.92□□□□□ -0.02
CCDC88A-214ENST00000621814 NCBP1Q09161 790 aaKnown RBP14.92□□□□□ -0.02
CCDC88A-214ENST00000621814 TMEM87BQ96K49 555 aa14.92□□□□□ -0.02
CCDC88A-214ENST00000621814 GNL3Q9BVP2 549 aaKnown RBP eCLIP14.92□□□□□ -0.02
CCDC88A-214ENST00000621814 PLEKHG2Q9H7P9 1386 aa14.92□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms