RNA–Protein interactions for RNA: ENST00000602239.1

SHKBP1-228, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 450 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-228ENST00000602239 IRF6O14896 467 aa19.6■□□□□ 0.73
SHKBP1-228ENST00000602239 INPP5BP32019 993 aa19.6■□□□□ 0.73
SHKBP1-228ENST00000602239 IL15P40933 162 aaPredicted RBP19.6■□□□□ 0.73
SHKBP1-228ENST00000602239 TIMM10P62072 90 aa19.6■□□□□ 0.73
SHKBP1-228ENST00000602239 NFIAQ12857 509 aa19.6■□□□□ 0.73
SHKBP1-228ENST00000602239 TAF1CQ15572 869 aaPredicted RBP19.6■□□□□ 0.73
SHKBP1-228ENST00000602239 FAM151AQ8WW52 585 aa19.6■□□□□ 0.73
SHKBP1-228ENST00000602239 EFCC1Q9HA90 598 aa19.6■□□□□ 0.73
SHKBP1-228ENST00000602239 COPRSQ9NQ92 184 aa19.6■□□□□ 0.73
SHKBP1-228ENST00000602239 CCER2I3L3R5 266 aa19.59■□□□□ 0.73
SHKBP1-228ENST00000602239 LDHBP07195 334 aaKnown RBP19.59■□□□□ 0.73
SHKBP1-228ENST00000602239 INTS3Q68E01 1043 aaKnown RBP19.59■□□□□ 0.73
SHKBP1-228ENST00000602239 ZFPM1Q8IX07 1006 aa19.59■□□□□ 0.73
SHKBP1-228ENST00000602239 ZFYVE28Q9HCC9 887 aa19.59■□□□□ 0.73
SHKBP1-228ENST00000602239 GNL3LQ9NVN8 582 aaKnown RBP19.59■□□□□ 0.73
SHKBP1-228ENST00000602239 FAM198AQ9UFP1 575 aa19.59■□□□□ 0.73
SHKBP1-228ENST00000602239 POTEFA5A3E0 1075 aa19.58■□□□□ 0.72
SHKBP1-228ENST00000602239 BTBD19C9JJ37 291 aa19.58■□□□□ 0.72
SHKBP1-228ENST00000602239 CCDC102BQ68D86 513 aa19.58■□□□□ 0.72
SHKBP1-228ENST00000602239 HOOK2Q96ED9 719 aa19.58■□□□□ 0.72
SHKBP1-228ENST00000602239 USP40Q9NVE5 1235 aa19.58■□□□□ 0.72
SHKBP1-228ENST00000602239 TNNQ9UQP3 1299 aa19.58■□□□□ 0.72
SHKBP1-228ENST00000602239 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP19.58■□□□□ 0.72
SHKBP1-228ENST00000602239 MYH13Q9UKX3 1938 aa19.58■□□□□ 0.72
SHKBP1-228ENST00000602239 CETPP11597 493 aa19.57■□□□□ 0.72
SHKBP1-228ENST00000602239 DCAF15Q66K64 600 aa19.57■□□□□ 0.72
SHKBP1-228ENST00000602239 ARHGAP45Q92619 1136 aa19.57■□□□□ 0.72
SHKBP1-228ENST00000602239 ZNF341Q9BYN7 854 aa19.57■□□□□ 0.72
SHKBP1-228ENST00000602239 DENND2AQ9ULE3 1009 aa19.57■□□□□ 0.72
SHKBP1-228ENST00000602239 HDAC5Q9UQL6 1122 aa19.57■□□□□ 0.72
SHKBP1-228ENST00000602239 RPAP1Q9BWH6 1393 aaPredicted RBP19.57■□□□□ 0.72
SHKBP1-228ENST00000602239 SALL1Q9NSC2 1324 aa19.56■□□□□ 0.72
SHKBP1-228ENST00000602239 PPIL2Q13356 520 aa19.56■□□□□ 0.72
SHKBP1-228ENST00000602239 SNAPC2Q13487 334 aa19.56■□□□□ 0.72
SHKBP1-228ENST00000602239 ZNF112Q9UJU3 913 aa19.56■□□□□ 0.72
SHKBP1-228ENST00000602239 MKI67P46013 3256 aaKnown RBP19.56■□□□□ 0.72
SHKBP1-228ENST00000602239 SEMA3EO15041 775 aa19.55■□□□□ 0.72
SHKBP1-228ENST00000602239 SRGAP3O43295 1099 aa19.55■□□□□ 0.72
SHKBP1-228ENST00000602239 TFCP2Q12800 502 aa19.55■□□□□ 0.72
SHKBP1-228ENST00000602239 RASGRF1Q13972 1273 aa19.55■□□□□ 0.72
SHKBP1-228ENST00000602239 GOLGA6L2Q8N9W4 650 aaPredicted RBP19.55■□□□□ 0.72
SHKBP1-228ENST00000602239 TLR2O60603 784 aa19.54■□□□□ 0.72
SHKBP1-228ENST00000602239 BCAR3O75815 825 aa19.54■□□□□ 0.72
SHKBP1-228ENST00000602239 GNAI3P08754 354 aa19.54■□□□□ 0.72
SHKBP1-228ENST00000602239 PPATQ06203 517 aa19.54■□□□□ 0.72
SHKBP1-228ENST00000602239 ARMC5Q96C12 935 aa19.54■□□□□ 0.72
SHKBP1-228ENST00000602239 ARHGAP39Q9C0H5 1083 aa19.54■□□□□ 0.72
SHKBP1-228ENST00000602239 A0A1B0GUL7 405 aa19.53■□□□□ 0.72
SHKBP1-228ENST00000602239 TRIM27P14373 513 aa19.53■□□□□ 0.72
SHKBP1-228ENST00000602239 PRPF38BQ5VTL8 546 aaKnown RBP19.53■□□□□ 0.72
SHKBP1-228ENST00000602239 XAGE2Q96GT9 111 aa19.53■□□□□ 0.72
SHKBP1-228ENST00000602239 ABCF2Q9UG63 623 aa19.53■□□□□ 0.72
SHKBP1-228ENST00000602239 PTCH2Q9Y6C5 1203 aa19.53■□□□□ 0.72
SHKBP1-228ENST00000602239 AK9Q5TCS8 1911 aa19.53■□□□□ 0.72
SHKBP1-228ENST00000602239 KIAA0100Q14667 2235 aaKnown RBP19.52■□□□□ 0.72
SHKBP1-228ENST00000602239 BRCA2P51587 3418 aa19.52■□□□□ 0.72
SHKBP1-228ENST00000602239 ZBTB22O15209 634 aa19.52■□□□□ 0.72
SHKBP1-228ENST00000602239 SLURP2P0DP57 97 aa19.52■□□□□ 0.72
SHKBP1-228ENST00000602239 MTX1Q13505 466 aa19.52■□□□□ 0.72
SHKBP1-228ENST00000602239 SH3BP5LQ7L8J4 393 aa19.52■□□□□ 0.72
SHKBP1-228ENST00000602239 FRAT1Q92837 279 aaPredicted RBP19.52■□□□□ 0.72
SHKBP1-228ENST00000602239 ECM2O94769 699 aaPredicted RBP19.51■□□□□ 0.71
SHKBP1-228ENST00000602239 EN2P19622 333 aaPredicted RBP19.51■□□□□ 0.71
SHKBP1-228ENST00000602239 RGS3P49796 1198 aa19.51■□□□□ 0.71
SHKBP1-228ENST00000602239 MOGSQ13724 837 aa19.51■□□□□ 0.71
SHKBP1-228ENST00000602239 CLUAP1Q96AJ1 413 aa19.51■□□□□ 0.71
SHKBP1-228ENST00000602239 ZCCHC17Q9NP64 241 aaKnown RBP19.51■□□□□ 0.71
SHKBP1-228ENST00000602239 KCNH4Q9UQ05 1017 aa19.51■□□□□ 0.71
SHKBP1-228ENST00000602239 GAKO14976 1311 aa19.51■□□□□ 0.71
SHKBP1-228ENST00000602239 PHF20L1A8MW92 1017 aa19.5■□□□□ 0.71
SHKBP1-228ENST00000602239 LACTBP83111 547 aaPredicted RBP19.5■□□□□ 0.71
SHKBP1-228ENST00000602239 C17orf99Q6UX52 265 aa19.5■□□□□ 0.71
SHKBP1-228ENST00000602239 ATF7IPQ6VMQ6 1270 aa19.5■□□□□ 0.71
SHKBP1-228ENST00000602239 ZGPATQ8N5A5 531 aaKnown RBP19.5■□□□□ 0.71
SHKBP1-228ENST00000602239 ZNF384Q8TF68 577 aa19.5■□□□□ 0.71
SHKBP1-228ENST00000602239 FAM163AQ96GL9 167 aaPredicted RBP19.5■□□□□ 0.71
SHKBP1-228ENST00000602239 NEUROD6Q96NK8 337 aa19.5■□□□□ 0.71
SHKBP1-228ENST00000602239 IDI2Q9BXS1 227 aa19.5■□□□□ 0.71
SHKBP1-228ENST00000602239 DDX4Q9NQI0 724 aaKnown RBP19.5■□□□□ 0.71
SHKBP1-228ENST00000602239 AKAP2Q9Y2D5 859 aa19.5■□□□□ 0.71
SHKBP1-228ENST00000602239 MYH2Q9UKX2 1941 aa19.5■□□□□ 0.71
SHKBP1-228ENST00000602239 ZSWIM8A7E2V4 1837 aa19.49■□□□□ 0.71
SHKBP1-228ENST00000602239 ATRNL1Q5VV63 1379 aa19.49■□□□□ 0.71
SHKBP1-228ENST00000602239 PNMA6EA0A0J9YXQ4 647 aa19.49■□□□□ 0.71
SHKBP1-228ENST00000602239 IPO8O15397 1037 aaKnown RBP19.49■□□□□ 0.71
SHKBP1-228ENST00000602239 WDHD1O75717 1129 aaPredicted RBP19.49■□□□□ 0.71
SHKBP1-228ENST00000602239 CTGFP29279 349 aa19.49■□□□□ 0.71
SHKBP1-228ENST00000602239 ARHGEF6Q15052 776 aa19.49■□□□□ 0.71
SHKBP1-228ENST00000602239 NOL9Q5SY16 702 aaKnown RBP19.49■□□□□ 0.71
SHKBP1-228ENST00000602239 PI16Q6UXB8 463 aa19.49■□□□□ 0.71
SHKBP1-228ENST00000602239 DZIP1Q86YF9 867 aaKnown RBP19.49■□□□□ 0.71
SHKBP1-228ENST00000602239 ZNF333Q96JL9 665 aa19.49■□□□□ 0.71
SHKBP1-228ENST00000602239 CPA4Q9UI42 421 aa19.49■□□□□ 0.71
SHKBP1-228ENST00000602239 DDTLA6NHG4 134 aaPredicted RBP19.48■□□□□ 0.71
SHKBP1-228ENST00000602239 PDHXO00330 501 aa19.48■□□□□ 0.71
SHKBP1-228ENST00000602239 ENTPD3O75355 529 aa19.48■□□□□ 0.71
SHKBP1-228ENST00000602239 GNAI2P04899 355 aa19.48■□□□□ 0.71
SHKBP1-228ENST00000602239 BTDP43251 543 aa19.48■□□□□ 0.71
SHKBP1-228ENST00000602239 MECOMQ03112 1051 aa19.48■□□□□ 0.71
SHKBP1-228ENST00000602239 MVPQ14764 893 aaKnown RBP19.48■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms