RNA–Protein interactions for RNA: ENST00000600840.1

TRIM28-214, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 338 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-214ENST00000600840 CHAF1AQ13111 956 aaPredicted RBP10.83□□□□□ -0.68
TRIM28-214ENST00000600840 RASA3Q14644 834 aa10.83□□□□□ -0.68
TRIM28-214ENST00000600840 MAP3K11Q16584 847 aa10.83□□□□□ -0.68
TRIM28-214ENST00000600840 ERICH6BQ5W0A0 696 aa10.83□□□□□ -0.68
TRIM28-214ENST00000600840 DCTPP1Q9H773 170 aa10.83□□□□□ -0.68
TRIM28-214ENST00000600840 FBXO3Q9UK99 471 aa10.83□□□□□ -0.68
TRIM28-214ENST00000600840 PA2G4Q9UQ80 394 aaKnown RBP10.83□□□□□ -0.68
TRIM28-214ENST00000600840 PTCH2Q9Y6C5 1203 aa10.83□□□□□ -0.68
TRIM28-214ENST00000600840 COL1A1P02452 1464 aaPredicted RBP10.82□□□□□ -0.68
TRIM28-214ENST00000600840 CIAO1O76071 339 aa10.82□□□□□ -0.68
TRIM28-214ENST00000600840 CRKP46108 304 aa10.82□□□□□ -0.68
TRIM28-214ENST00000600840 SLC4A8Q2Y0W8 1093 aa10.82□□□□□ -0.68
TRIM28-214ENST00000600840 SPDYE2Q495Y8 402 aa10.82□□□□□ -0.68
TRIM28-214ENST00000600840 SLC10A4Q96EP9 437 aa10.82□□□□□ -0.68
TRIM28-214ENST00000600840 TEPSINQ96N21 525 aa10.82□□□□□ -0.68
TRIM28-214ENST00000600840 TCP10L2B9ZVM9 353 aa10.81□□□□□ -0.68
TRIM28-214ENST00000600840 EYA2O00167 538 aa10.81□□□□□ -0.68
TRIM28-214ENST00000600840 CACNB3P54284 484 aa10.81□□□□□ -0.68
TRIM28-214ENST00000600840 SP3Q02447 781 aa10.81□□□□□ -0.68
TRIM28-214ENST00000600840 SLC9C1Q4G0N8 1177 aa10.81□□□□□ -0.68
TRIM28-214ENST00000600840 PTPN18Q99952 460 aa10.81□□□□□ -0.68
TRIM28-214ENST00000600840 TMEM39BQ9GZU3 492 aa10.81□□□□□ -0.68
TRIM28-214ENST00000600840 SIL1Q9H173 461 aa10.81□□□□□ -0.68
TRIM28-214ENST00000600840 SERPINA10Q9UK55 444 aa10.81□□□□□ -0.68
TRIM28-214ENST00000600840 MYH13Q9UKX3 1938 aa10.81□□□□□ -0.68
TRIM28-214ENST00000600840 BRCA2P51587 3418 aa10.81□□□□□ -0.68
TRIM28-214ENST00000600840 MYO1BO43795 1136 aa10.8□□□□□ -0.68
TRIM28-214ENST00000600840 ZBTB48P10074 688 aaPredicted RBP10.8□□□□□ -0.68
TRIM28-214ENST00000600840 INHBEP58166 350 aa10.8□□□□□ -0.68
TRIM28-214ENST00000600840 VPS37DQ86XT2 251 aa10.8□□□□□ -0.68
TRIM28-214ENST00000600840 SMC5Q8IY18 1101 aa10.8□□□□□ -0.68
TRIM28-214ENST00000600840 SH3TC2Q8TF17 1288 aa10.8□□□□□ -0.68
TRIM28-214ENST00000600840 CNKSR2Q8WXI2 1034 aa10.8□□□□□ -0.68
TRIM28-214ENST00000600840 PPP2R3BQ9Y5P8 575 aa10.8□□□□□ -0.68
TRIM28-214ENST00000600840 SOX1O00570 391 aaPredicted RBP10.79□□□□□ -0.68
TRIM28-214ENST00000600840 SURF6O75683 361 aaKnown RBP10.79□□□□□ -0.68
TRIM28-214ENST00000600840 PUM3Q15397 648 aaKnown RBP10.79□□□□□ -0.68
TRIM28-214ENST00000600840 SUPT20HL1Q3ZLR7 823 aa10.79□□□□□ -0.68
TRIM28-214ENST00000600840 CAVIN4Q5BKX8 364 aa10.79□□□□□ -0.68
TRIM28-214ENST00000600840 APOBEC3HQ6NTF7 200 aaKnown RBP10.79□□□□□ -0.68
TRIM28-214ENST00000600840 PPP1R3FQ6ZSY5 799 aaPredicted RBP10.79□□□□□ -0.68
TRIM28-214ENST00000600840 SHISA4Q96DD7 197 aa10.79□□□□□ -0.68
TRIM28-214ENST00000600840 CENPFP49454 3210 aa10.79□□□□□ -0.68
TRIM28-214ENST00000600840 PPP1R12BO60237 982 aaPredicted RBP10.78□□□□□ -0.68
TRIM28-214ENST00000600840 FRAT2O75474 233 aaPredicted RBP10.78□□□□□ -0.68
TRIM28-214ENST00000600840 ECM2O94769 699 aaPredicted RBP10.78□□□□□ -0.68
TRIM28-214ENST00000600840 NEFLP07196 543 aa10.78□□□□□ -0.68
TRIM28-214ENST00000600840 IFIT1P09914 478 aaKnown RBP10.78□□□□□ -0.68
TRIM28-214ENST00000600840 IL15P40933 162 aaPredicted RBP10.78□□□□□ -0.68
TRIM28-214ENST00000600840 DPF3Q92784 378 aa10.78□□□□□ -0.68
TRIM28-214ENST00000600840 ARHGAP39Q9C0H5 1083 aa10.78□□□□□ -0.68
TRIM28-214ENST00000600840 EXOC6BQ9Y2D4 811 aa10.78□□□□□ -0.68
TRIM28-214ENST00000600840 SZT2Q5T011 3432 aa10.78□□□□□ -0.68
TRIM28-214ENST00000600840 HMMRO75330 724 aa10.77□□□□□ -0.69
TRIM28-214ENST00000600840 ADORA1P30542 326 aa10.77□□□□□ -0.69
TRIM28-214ENST00000600840 PHKA1P46020 1223 aa10.77□□□□□ -0.69
TRIM28-214ENST00000600840 HDLBPQ00341 1268 aaKnown RBP10.77□□□□□ -0.69
TRIM28-214ENST00000600840 TFCP2Q12800 502 aa10.77□□□□□ -0.69
TRIM28-214ENST00000600840 NBPF11Q86T75 865 aa10.77□□□□□ -0.69
TRIM28-214ENST00000600840 RHPN1Q8TCX5 695 aa10.77□□□□□ -0.69
TRIM28-214ENST00000600840 LPIN2Q92539 896 aa10.77□□□□□ -0.69
TRIM28-214ENST00000600840 LRCH3Q96II8 777 aa10.77□□□□□ -0.69
TRIM28-214ENST00000600840 ZDHHC15Q96MV8 337 aa10.77□□□□□ -0.69
TRIM28-214ENST00000600840 PRO3102Q9H379 93 aa10.77□□□□□ -0.69
TRIM28-214ENST00000600840 RWDD1Q9H446 243 aaPredicted RBP10.77□□□□□ -0.69
TRIM28-214ENST00000600840 ELP3Q9H9T3 547 aa10.77□□□□□ -0.69
TRIM28-214ENST00000600840 GPR108Q9NPR9 543 aa10.77□□□□□ -0.69
TRIM28-214ENST00000600840 TESPA1A2RU30 521 aaPredicted RBP10.76□□□□□ -0.69
TRIM28-214ENST00000600840 RAB11FIP3O75154 756 aa10.76□□□□□ -0.69
TRIM28-214ENST00000600840 SLC5A1P13866 664 aa10.76□□□□□ -0.69
TRIM28-214ENST00000600840 PRDX5P30044 214 aa10.76□□□□□ -0.69
TRIM28-214ENST00000600840 IREB2P48200 963 aaKnown RBP10.76□□□□□ -0.69
TRIM28-214ENST00000600840 G3BP1Q13283 466 aaKnown RBP eCLIP10.76□□□□□ -0.697e-11■■□□□ 11.9
TRIM28-214ENST00000600840 MTFR1Q15390 333 aa10.76□□□□□ -0.69
TRIM28-214ENST00000600840 DIXDC1Q155Q3 683 aa10.76□□□□□ -0.69
TRIM28-214ENST00000600840 ATP2B3Q16720 1220 aa10.76□□□□□ -0.69
TRIM28-214ENST00000600840 OTUD7BQ6GQQ9 843 aa10.76□□□□□ -0.69
TRIM28-214ENST00000600840 ANKRD13AQ8IZ07 590 aa10.76□□□□□ -0.69
TRIM28-214ENST00000600840 DDX55Q8NHQ9 600 aaKnown RBP eCLIP10.76□□□□□ -0.691e-7■■□□□ 12.6
TRIM28-214ENST00000600840 TBC1D22AQ8WUA7 517 aa10.76□□□□□ -0.69
TRIM28-214ENST00000600840 TEKT1Q969V4 418 aa10.76□□□□□ -0.69
TRIM28-214ENST00000600840 OPTNQ96CV9 577 aa10.76□□□□□ -0.69
TRIM28-214ENST00000600840 MS4A4AQ96JQ5 239 aa10.76□□□□□ -0.69
TRIM28-214ENST00000600840 MRIQ9BWK5 157 aa10.76□□□□□ -0.69
TRIM28-214ENST00000600840 PPP4R2Q9NY27 417 aa10.76□□□□□ -0.69
TRIM28-214ENST00000600840 CEP290O15078 2479 aa10.76□□□□□ -0.69
TRIM28-214ENST00000600840 ZBTB22O15209 634 aa10.75□□□□□ -0.69
TRIM28-214ENST00000600840 TIMM10P62072 90 aa10.75□□□□□ -0.69
TRIM28-214ENST00000600840 TNFAIP1Q13829 316 aa10.75□□□□□ -0.69
TRIM28-214ENST00000600840 VGLL4Q14135 290 aa10.75□□□□□ -0.69
TRIM28-214ENST00000600840 TAF1CQ15572 869 aaPredicted RBP10.75□□□□□ -0.69
TRIM28-214ENST00000600840 HSP90AB4PQ58FF6 505 aa10.75□□□□□ -0.69
TRIM28-214ENST00000600840 BRI3BPQ8WY22 251 aa10.75□□□□□ -0.69
TRIM28-214ENST00000600840 EAF2Q96CJ1 260 aaPredicted RBP10.75□□□□□ -0.69
TRIM28-214ENST00000600840 CEP126Q9P2H0 1117 aa10.75□□□□□ -0.69
TRIM28-214ENST00000600840 DAGLAQ9Y4D2 1042 aa10.75□□□□□ -0.69
TRIM28-214ENST00000600840 MYH2Q9UKX2 1941 aa10.74□□□□□ -0.69
TRIM28-214ENST00000600840 UNCXA6NJT0 531 aa10.74□□□□□ -0.69
TRIM28-214ENST00000600840 SLURP2P0DP57 97 aa10.74□□□□□ -0.69
TRIM28-214ENST00000600840 MAP3K9P80192 1104 aa10.74□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms