RNA–Protein interactions for RNA: ENST00000600055.1

LIG1-219, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 602 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-219ENST00000600055 TMOD2Q9NZR1 351 aa18.57■□□□□ 0.56
LIG1-219ENST00000600055 SSC5DA1L4H1 1573 aa18.56■□□□□ 0.56
LIG1-219ENST00000600055 UBE2Q2LH0YL09 131 aa18.56■□□□□ 0.56
LIG1-219ENST00000600055 TNNI2P48788 182 aa18.56■□□□□ 0.56
LIG1-219ENST00000600055 NFIAQ12857 509 aa18.56■□□□□ 0.56
LIG1-219ENST00000600055 CAPNS2Q96L46 248 aa18.56■□□□□ 0.56
LIG1-219ENST00000600055 TEPSINQ96N21 525 aa18.56■□□□□ 0.56
LIG1-219ENST00000600055 DNAJC2Q99543 621 aaKnown RBP18.56■□□□□ 0.56
LIG1-219ENST00000600055 BOLA2Q9H3K6 86 aa18.56■□□□□ 0.56
LIG1-219ENST00000600055 WDR33Q9C0J8 1336 aaKnown RBP18.55■□□□□ 0.56
LIG1-219ENST00000600055 GPR75-ASB3A0A0A6YYF3 556 aa18.55■□□□□ 0.56
LIG1-219ENST00000600055 IGHDP01880 384 aa18.55■□□□□ 0.56
LIG1-219ENST00000600055 LDHCP07864 332 aa18.55■□□□□ 0.56
LIG1-219ENST00000600055 GSTO1P78417 241 aa18.55■□□□□ 0.56
LIG1-219ENST00000600055 TCP10Q12799 353 aa18.55■□□□□ 0.56
LIG1-219ENST00000600055 NAA16Q6N069 864 aaPredicted RBP18.55■□□□□ 0.56
LIG1-219ENST00000600055 JMYQ8N9B5 988 aa18.55■□□□□ 0.56
LIG1-219ENST00000600055 PPIL4Q8WUA2 492 aaKnown RBP eCLIP18.55■□□□□ 0.56
LIG1-219ENST00000600055 EDC3Q96F86 508 aaKnown RBP18.55■□□□□ 0.56
LIG1-219ENST00000600055 IDH1O75874 414 aaKnown RBP18.54■□□□□ 0.56
LIG1-219ENST00000600055 ATP5JP18859 108 aa18.54■□□□□ 0.56
LIG1-219ENST00000600055 FKBP1BP68106 108 aa18.54■□□□□ 0.56
LIG1-219ENST00000600055 SUPT20HL1Q3ZLR7 823 aa18.54■□□□□ 0.56
LIG1-219ENST00000600055 FKBP1CQ5VVH2 108 aa18.54■□□□□ 0.56
LIG1-219ENST00000600055 TSHZ3Q63HK5 1081 aa18.54■□□□□ 0.56
LIG1-219ENST00000600055 ADGRA1Q86SQ6 560 aa18.54■□□□□ 0.56
LIG1-219ENST00000600055 HHIPL1Q96JK4 782 aa18.54■□□□□ 0.56
LIG1-219ENST00000600055 FAM198AQ9UFP1 575 aa18.54■□□□□ 0.56
LIG1-219ENST00000600055 MYH2Q9UKX2 1941 aa18.53■□□□□ 0.56
LIG1-219ENST00000600055 GOLIM4O00461 696 aa18.53■□□□□ 0.56
LIG1-219ENST00000600055 AOC2O75106 756 aa18.53■□□□□ 0.56
LIG1-219ENST00000600055 RHBDL3P58872 404 aa18.53■□□□□ 0.56
LIG1-219ENST00000600055 ANKRD45Q5TZF3 282 aa18.53■□□□□ 0.56
LIG1-219ENST00000600055 RGMBQ6NW40 437 aa18.53■□□□□ 0.56
LIG1-219ENST00000600055 FAM83AQ86UY5 434 aa18.53■□□□□ 0.56
LIG1-219ENST00000600055 ZFPM1Q8IX07 1006 aa18.53■□□□□ 0.56
LIG1-219ENST00000600055 OTUD7AQ8TE49 926 aaPredicted RBP18.53■□□□□ 0.56
LIG1-219ENST00000600055 ANGEL1Q9UNK9 670 aaKnown RBP18.53■□□□□ 0.56
LIG1-219ENST00000600055 PAPPA2Q9BXP8 1791 aa18.53■□□□□ 0.56
LIG1-219ENST00000600055 ECE1P42892 770 aa18.52■□□□□ 0.56
LIG1-219ENST00000600055 ZNF157P51786 506 aaPredicted RBP18.52■□□□□ 0.56
LIG1-219ENST00000600055 ARMC9Q7Z3E5 817 aa18.52■□□□□ 0.56
LIG1-219ENST00000600055 MAGEB6Q8N7X4 407 aa18.52■□□□□ 0.56
LIG1-219ENST00000600055 GCC1Q96CN9 775 aa18.52■□□□□ 0.56
LIG1-219ENST00000600055 RWDD1Q9H446 243 aaPredicted RBP18.52■□□□□ 0.56
LIG1-219ENST00000600055 DDX4Q9NQI0 724 aaKnown RBP18.52■□□□□ 0.56
LIG1-219ENST00000600055 ECHDC1Q9NTX5 307 aa18.52■□□□□ 0.56
LIG1-219ENST00000600055 USP2O75604 605 aaPredicted RBP18.51■□□□□ 0.55
LIG1-219ENST00000600055 WDHD1O75717 1129 aaPredicted RBP18.51■□□□□ 0.55
LIG1-219ENST00000600055 CYP7A1P22680 504 aa18.51■□□□□ 0.55
LIG1-219ENST00000600055 RGS3P49796 1198 aa18.51■□□□□ 0.55
LIG1-219ENST00000600055 FAM151AQ8WW52 585 aa18.51■□□□□ 0.55
LIG1-219ENST00000600055 HAUS7Q99871 368 aa18.51■□□□□ 0.55
LIG1-219ENST00000600055 IDI2Q9BXS1 227 aa18.51■□□□□ 0.55
LIG1-219ENST00000600055 AATFQ9NY61 560 aaKnown RBP eCLIP18.51■□□□□ 0.55
LIG1-219ENST00000600055 ZBTB4Q9P1Z0 1013 aaPredicted RBP18.51■□□□□ 0.55
LIG1-219ENST00000600055 MYO5AQ9Y4I1 1855 aaKnown RBP18.5■□□□□ 0.55
LIG1-219ENST00000600055 FAM155AB1AL88 458 aaPredicted RBP18.5■□□□□ 0.55
LIG1-219ENST00000600055 PPP1R12BO60237 982 aaPredicted RBP18.5■□□□□ 0.55
LIG1-219ENST00000600055 MAP3K12Q12852 859 aa18.5■□□□□ 0.55
LIG1-219ENST00000600055 PICALMQ13492 652 aa18.5■□□□□ 0.55
LIG1-219ENST00000600055 TTF1Q15361 905 aaPredicted RBP18.5■□□□□ 0.55
LIG1-219ENST00000600055 SH3RF3Q8TEJ3 882 aaPredicted RBP18.5■□□□□ 0.55
LIG1-219ENST00000600055 ZIC5Q96T25 663 aa18.5■□□□□ 0.55
LIG1-219ENST00000600055 PAG1Q9NWQ8 432 aa18.5■□□□□ 0.55
LIG1-219ENST00000600055 RFX7Q2KHR2 1363 aa18.5■□□□□ 0.55
LIG1-219ENST00000600055 DYNLL1P63167 89 aaKnown RBP18.49■□□□□ 0.55
LIG1-219ENST00000600055 MAP3K11Q16584 847 aa18.49■□□□□ 0.55
LIG1-219ENST00000600055 LDLRAD1Q5T700 205 aa18.49■□□□□ 0.55
LIG1-219ENST00000600055 B4GALNT3Q6L9W6 998 aa18.49■□□□□ 0.55
LIG1-219ENST00000600055 RASAL3Q86YV0 1011 aa18.49■□□□□ 0.55
LIG1-219ENST00000600055 SMC5Q8IY18 1101 aa18.49■□□□□ 0.55
LIG1-219ENST00000600055 MIGA1Q8NAN2 632 aa18.49■□□□□ 0.55
LIG1-219ENST00000600055 NOL10Q9BSC4 688 aaKnown RBP18.49■□□□□ 0.55
LIG1-219ENST00000600055 MAST2Q6P0Q8 1798 aa18.48■□□□□ 0.55
LIG1-219ENST00000600055 IGSF3O75054 1194 aa18.48■□□□□ 0.55
LIG1-219ENST00000600055 ENTPD3O75355 529 aa18.48■□□□□ 0.55
LIG1-219ENST00000600055 SLC10A3P09131 477 aa18.48■□□□□ 0.55
LIG1-219ENST00000600055 PDE6AP16499 860 aa18.48■□□□□ 0.55
LIG1-219ENST00000600055 PPP4CP60510 307 aa18.48■□□□□ 0.55
LIG1-219ENST00000600055 SLFNL1Q499Z3 407 aa18.48■□□□□ 0.55
LIG1-219ENST00000600055 MIGA2Q7L4E1 593 aa18.48■□□□□ 0.55
LIG1-219ENST00000600055 SH3BP5LQ7L8J4 393 aa18.48■□□□□ 0.55
LIG1-219ENST00000600055 TEX11Q8IYF3 940 aa18.48■□□□□ 0.55
LIG1-219ENST00000600055 GPATCH3Q96I76 525 aa18.48■□□□□ 0.55
LIG1-219ENST00000600055 CLMNQ96JQ2 1002 aa18.48■□□□□ 0.55
LIG1-219ENST00000600055 ZBTB47Q9UFB7 747 aaPredicted RBP18.48■□□□□ 0.55
LIG1-219ENST00000600055 RPAP1Q9BWH6 1393 aaPredicted RBP18.47■□□□□ 0.55
LIG1-219ENST00000600055 BAG3O95817 575 aa18.47■□□□□ 0.55
LIG1-219ENST00000600055 CHGBP05060 677 aa18.47■□□□□ 0.55
LIG1-219ENST00000600055 IREB2P48200 963 aaKnown RBP18.47■□□□□ 0.55
LIG1-219ENST00000600055 SLC9C2Q5TAH2 1124 aa18.47■□□□□ 0.55
LIG1-219ENST00000600055 CCDC102AQ96A19 550 aa18.47■□□□□ 0.55
LIG1-219ENST00000600055 SALL3Q9BXA9 1300 aa18.47■□□□□ 0.55
LIG1-219ENST00000600055 DDTLA6NHG4 134 aaPredicted RBP18.46■□□□□ 0.55
LIG1-219ENST00000600055 MAP4K4O95819 1239 aaPredicted RBP18.46■□□□□ 0.55
LIG1-219ENST00000600055 SLURP2P0DP57 97 aa18.46■□□□□ 0.55
LIG1-219ENST00000600055 LNPKQ9C0E8 428 aa18.46■□□□□ 0.55
LIG1-219ENST00000600055 ZNF532Q9HCE3 1301 aa18.46■□□□□ 0.55
LIG1-219ENST00000600055 DOCK2Q92608 1830 aa18.45■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms