RNA–Protein interactions for RNA: ENST00000599833.1

SHKBP1-221, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 761 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-221ENST00000599833 KLRG1Q96E93 195 aa23.81■■□□□ 1.4
SHKBP1-221ENST00000599833 HAUS7Q99871 368 aa23.81■■□□□ 1.4
SHKBP1-221ENST00000599833 GBA2Q9HCG7 927 aaPredicted RBP23.81■■□□□ 1.4
SHKBP1-221ENST00000599833 MYH7P12883 1935 aa23.8■■□□□ 1.4
SHKBP1-221ENST00000599833 OTOFQ9HC10 1997 aa23.8■■□□□ 1.4
SHKBP1-221ENST00000599833 TCP10L2B9ZVM9 353 aa23.8■■□□□ 1.4
SHKBP1-221ENST00000599833 TSHZ3Q63HK5 1081 aa23.8■■□□□ 1.4
SHKBP1-221ENST00000599833 MOB2Q70IA6 237 aa23.8■■□□□ 1.4
SHKBP1-221ENST00000599833 BCL11AQ9H165 835 aa23.8■■□□□ 1.4
SHKBP1-221ENST00000599833 BOLA2Q9H3K6 86 aa23.8■■□□□ 1.4
SHKBP1-221ENST00000599833 RAI14Q9P0K7 980 aa23.8■■□□□ 1.4
SHKBP1-221ENST00000599833 LRP2BPQ9P2M1 347 aa23.8■■□□□ 1.4
SHKBP1-221ENST00000599833 FAM198AQ9UFP1 575 aa23.8■■□□□ 1.4
SHKBP1-221ENST00000599833 WDHD1O75717 1129 aaPredicted RBP23.79■■□□□ 1.4
SHKBP1-221ENST00000599833 BTDP43251 543 aa23.79■■□□□ 1.4
SHKBP1-221ENST00000599833 NBPF12Q5TAG4 269 aaPredicted RBP23.79■■□□□ 1.4
SHKBP1-221ENST00000599833 FAM83AQ86UY5 434 aa23.79■■□□□ 1.4
SHKBP1-221ENST00000599833 TMEM39BQ9GZU3 492 aa23.79■■□□□ 1.4
SHKBP1-221ENST00000599833 RWDD1Q9H446 243 aaPredicted RBP23.79■■□□□ 1.4
SHKBP1-221ENST00000599833 ECHDC1Q9NTX5 307 aa23.79■■□□□ 1.4
SHKBP1-221ENST00000599833 MKRN1Q9UHC7 482 aaKnown RBP23.79■■□□□ 1.4
SHKBP1-221ENST00000599833 RPAP1Q9BWH6 1393 aaPredicted RBP23.78■■□□□ 1.4
SHKBP1-221ENST00000599833 PI4K2BQ8TCG2 481 aa23.78■■□□□ 1.4
SHKBP1-221ENST00000599833 HHIPL1Q96JK4 782 aa23.78■■□□□ 1.4
SHKBP1-221ENST00000599833 IDI2Q9BXS1 227 aa23.78■■□□□ 1.4
SHKBP1-221ENST00000599833 DDX4Q9NQI0 724 aaKnown RBP23.78■■□□□ 1.4
SHKBP1-221ENST00000599833 USP40Q9NVE5 1235 aa23.78■■□□□ 1.4
SHKBP1-221ENST00000599833 FZD1Q9UP38 647 aa23.78■■□□□ 1.4
SHKBP1-221ENST00000599833 ANKRD45Q5TZF3 282 aa23.77■■□□□ 1.4
SHKBP1-221ENST00000599833 SLF2Q8IX21 1173 aa23.77■■□□□ 1.4
SHKBP1-221ENST00000599833 ATRNL1Q5VV63 1379 aa23.77■■□□□ 1.4
SHKBP1-221ENST00000599833 TCRBV5S4A2TA0A5A2 114 aa23.76■■□□□ 1.39
SHKBP1-221ENST00000599833 GOLIM4O00461 696 aa23.76■■□□□ 1.39
SHKBP1-221ENST00000599833 VEGFBP49765 207 aa23.76■■□□□ 1.39
SHKBP1-221ENST00000599833 PPP4CP60510 307 aa23.76■■□□□ 1.39
SHKBP1-221ENST00000599833 FKBP1BP68106 108 aa23.76■■□□□ 1.39
SHKBP1-221ENST00000599833 GSTO1P78417 241 aa23.76■■□□□ 1.39
SHKBP1-221ENST00000599833 TNFAIP1Q13829 316 aa23.76■■□□□ 1.39
SHKBP1-221ENST00000599833 MAP3K11Q16584 847 aa23.76■■□□□ 1.39
SHKBP1-221ENST00000599833 NAA16Q6N069 864 aaPredicted RBP23.76■■□□□ 1.39
SHKBP1-221ENST00000599833 ZFPM1Q8IX07 1006 aa23.76■■□□□ 1.39
SHKBP1-221ENST00000599833 JMYQ8N9B5 988 aa23.76■■□□□ 1.39
SHKBP1-221ENST00000599833 DNAJC2Q99543 621 aaKnown RBP23.76■■□□□ 1.39
SHKBP1-221ENST00000599833 ABT1Q9ULW3 272 aaKnown RBP23.76■■□□□ 1.39
SHKBP1-221ENST00000599833 DEFB115Q30KQ5 88 aa23.75■■□□□ 1.39
SHKBP1-221ENST00000599833 FAM151AQ8WW52 585 aa23.75■■□□□ 1.39
SHKBP1-221ENST00000599833 PAG1Q9NWQ8 432 aa23.75■■□□□ 1.39
SHKBP1-221ENST00000599833 TTC41PQ6P2S7 1318 aa23.75■■□□□ 1.39
SHKBP1-221ENST00000599833 SIPA1L1O43166 1804 aa23.75■■□□□ 1.39
SHKBP1-221ENST00000599833 IDH1O75874 414 aaKnown RBP23.74■■□□□ 1.39
SHKBP1-221ENST00000599833 CHGBP05060 677 aa23.74■■□□□ 1.39
SHKBP1-221ENST00000599833 LDHCP07864 332 aa23.74■■□□□ 1.39
SHKBP1-221ENST00000599833 HUNKP57058 714 aa23.74■■□□□ 1.39
SHKBP1-221ENST00000599833 NUCB1Q02818 461 aa23.74■■□□□ 1.39
SHKBP1-221ENST00000599833 SH3BP5LQ7L8J4 393 aa23.74■■□□□ 1.39
SHKBP1-221ENST00000599833 C2orf69Q8N8R5 385 aa23.74■■□□□ 1.39
SHKBP1-221ENST00000599833 FAM155AB1AL88 458 aaPredicted RBP23.73■■□□□ 1.39
SHKBP1-221ENST00000599833 TTF1Q15361 905 aaPredicted RBP23.73■■□□□ 1.39
SHKBP1-221ENST00000599833 SLFNL1Q499Z3 407 aa23.73■■□□□ 1.39
SHKBP1-221ENST00000599833 LDLRAD1Q5T700 205 aa23.73■■□□□ 1.39
SHKBP1-221ENST00000599833 CYP4F22Q6NT55 531 aa23.73■■□□□ 1.39
SHKBP1-221ENST00000599833 MAGEB6Q8N7X4 407 aa23.73■■□□□ 1.39
SHKBP1-221ENST00000599833 STAP2Q9UGK3 403 aa23.73■■□□□ 1.39
SHKBP1-221ENST00000599833 DDX60LQ5H9U9 1706 aaKnown RBP23.73■■□□□ 1.39
SHKBP1-221ENST00000599833 LAMB1P07942 1786 aa23.73■■□□□ 1.39
SHKBP1-221ENST00000599833 USP2O75604 605 aaPredicted RBP23.72■■□□□ 1.39
SHKBP1-221ENST00000599833 NPM3O75607 178 aaKnown RBP23.72■■□□□ 1.39
SHKBP1-221ENST00000599833 PDE6AP16499 860 aa23.72■■□□□ 1.39
SHKBP1-221ENST00000599833 TNNI2P48788 182 aa23.72■■□□□ 1.39
SHKBP1-221ENST00000599833 RGS3P49796 1198 aa23.72■■□□□ 1.39
SHKBP1-221ENST00000599833 SH3RF3Q8TEJ3 882 aaPredicted RBP23.72■■□□□ 1.39
SHKBP1-221ENST00000599833 AATFQ9NY61 560 aaKnown RBP eCLIP23.72■■□□□ 1.39
SHKBP1-221ENST00000599833 TMOD2Q9NZR1 351 aa23.72■■□□□ 1.39
SHKBP1-221ENST00000599833 WDR33Q9C0J8 1336 aaKnown RBP23.71■■□□□ 1.39
SHKBP1-221ENST00000599833 UBE2Q2LH0YL09 131 aa23.71■■□□□ 1.39
SHKBP1-221ENST00000599833 ENTPD3O75355 529 aa23.71■■□□□ 1.39
SHKBP1-221ENST00000599833 MAP4K4O95819 1239 aaPredicted RBP23.71■■□□□ 1.39
SHKBP1-221ENST00000599833 MX1P20591 662 aa23.71■■□□□ 1.39
SHKBP1-221ENST00000599833 CYP7A1P22680 504 aa23.71■■□□□ 1.39
SHKBP1-221ENST00000599833 DYNLL1P63167 89 aaKnown RBP23.71■■□□□ 1.39
SHKBP1-221ENST00000599833 TCP10Q12799 353 aa23.71■■□□□ 1.39
SHKBP1-221ENST00000599833 MAP3K12Q12852 859 aa23.71■■□□□ 1.39
SHKBP1-221ENST00000599833 TMED8Q6PL24 325 aaPredicted RBP23.71■■□□□ 1.39
SHKBP1-221ENST00000599833 RIOK1Q9BRS2 568 aaKnown RBP23.71■■□□□ 1.39
SHKBP1-221ENST00000599833 LNPKQ9C0E8 428 aa23.71■■□□□ 1.39
SHKBP1-221ENST00000599833 COL2A1P02458 1487 aaPredicted RBP23.7■■□□□ 1.38
SHKBP1-221ENST00000599833 SUPT20HL1Q3ZLR7 823 aa23.7■■□□□ 1.38
SHKBP1-221ENST00000599833 B4GALNT3Q6L9W6 998 aa23.7■■□□□ 1.38
SHKBP1-221ENST00000599833 CHD1LQ86WJ1 897 aa23.7■■□□□ 1.38
SHKBP1-221ENST00000599833 CAPNS2Q96L46 248 aa23.7■■□□□ 1.38
SHKBP1-221ENST00000599833 AK9Q5TCS8 1911 aa23.7■■□□□ 1.38
SHKBP1-221ENST00000599833 ADD2P35612 726 aa23.69■■□□□ 1.38
SHKBP1-221ENST00000599833 PRKG1Q13976 671 aa23.69■■□□□ 1.38
SHKBP1-221ENST00000599833 SLC9C2Q5TAH2 1124 aa23.69■■□□□ 1.38
SHKBP1-221ENST00000599833 ZNF532Q9HCE3 1301 aa23.68■■□□□ 1.38
SHKBP1-221ENST00000599833 DDTLA6NHG4 134 aaPredicted RBP23.68■■□□□ 1.38
SHKBP1-221ENST00000599833 NF2P35240 595 aa23.68■■□□□ 1.38
SHKBP1-221ENST00000599833 PDE1AP54750 535 aa23.68■■□□□ 1.38
SHKBP1-221ENST00000599833 RGMBQ6NW40 437 aa23.68■■□□□ 1.38
SHKBP1-221ENST00000599833 RASAL3Q86YV0 1011 aa23.68■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms