RNA–Protein interactions for RNA: ENST00000598907.5

SHKBP1-218, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 738 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-218ENST00000598907 IL1R1P14778 569 aa17.6■□□□□ 0.41
SHKBP1-218ENST00000598907 MAGEA10P43363 369 aaPredicted RBP17.6■□□□□ 0.41
SHKBP1-218ENST00000598907 FKBP1AP62942 108 aaKnown RBP17.6■□□□□ 0.41
SHKBP1-218ENST00000598907 DZIP1LQ8IYY4 767 aaKnown RBP17.6■□□□□ 0.41
SHKBP1-218ENST00000598907 MYH16Q9H6N6 1097 aa17.6■□□□□ 0.41
SHKBP1-218ENST00000598907 MBIPQ9NS73 344 aa17.6■□□□□ 0.41
SHKBP1-218ENST00000598907 FANCIQ9NVI1 1328 aa17.59■□□□□ 0.41
SHKBP1-218ENST00000598907 NECAB2Q7Z6G3 386 aa17.59■□□□□ 0.41
SHKBP1-218ENST00000598907 ANKRD23Q86SG2 305 aa17.59■□□□□ 0.41
SHKBP1-218ENST00000598907 FAM161BQ96MY7 647 aa17.59■□□□□ 0.41
SHKBP1-218ENST00000598907 VCANP13611 3396 aa17.59■□□□□ 0.41
SHKBP1-218ENST00000598907 MFSD14BQ5SR56 506 aa17.58■□□□□ 0.4
SHKBP1-218ENST00000598907 TSR2Q969E8 191 aaKnown RBP17.58■□□□□ 0.4
SHKBP1-218ENST00000598907 UBE2OQ9C0C9 1292 aaKnown RBP17.58■□□□□ 0.4
SHKBP1-218ENST00000598907 SERPINA10Q9UK55 444 aa17.58■□□□□ 0.4
SHKBP1-218ENST00000598907 SPTBN5Q9NRC6 3674 aaKnown RBP17.57■□□□□ 0.4
SHKBP1-218ENST00000598907 CYP2C8P10632 490 aa17.57■□□□□ 0.4
SHKBP1-218ENST00000598907 FLT3LGP49771 235 aa17.57■□□□□ 0.4
SHKBP1-218ENST00000598907 GUCD1Q96NT3 240 aa17.57■□□□□ 0.4
SHKBP1-218ENST00000598907 CRKP46108 304 aa17.56■□□□□ 0.4
SHKBP1-218ENST00000598907 NEXNQ0ZGT2 675 aa17.56■□□□□ 0.4
SHKBP1-218ENST00000598907 PARK7Q99497 189 aaKnown RBP17.56■□□□□ 0.4
SHKBP1-218ENST00000598907 PI4KAP2A4QPH2 592 aa17.55■□□□□ 0.4
SHKBP1-218ENST00000598907 NEURL1BA8MQ27 555 aa17.55■□□□□ 0.4
SHKBP1-218ENST00000598907 PLIN1O60240 522 aa17.55■□□□□ 0.4
SHKBP1-218ENST00000598907 PPATQ06203 517 aa17.55■□□□□ 0.4
SHKBP1-218ENST00000598907 C15orf52Q6ZUT6 534 aaKnown RBP17.55■□□□□ 0.4
SHKBP1-218ENST00000598907 PI4KAP1Q8N8J0 262 aa17.55■□□□□ 0.4
SHKBP1-218ENST00000598907 PAK6Q9NQU5 681 aaPredicted RBP17.55■□□□□ 0.4
SHKBP1-218ENST00000598907 DDX60LQ5H9U9 1706 aaKnown RBP17.55■□□□□ 0.4
SHKBP1-218ENST00000598907 BCRP11274 1271 aa17.54■□□□□ 0.4
SHKBP1-218ENST00000598907 INPP5BP32019 993 aa17.54■□□□□ 0.4
SHKBP1-218ENST00000598907 CRISPLD2Q9H0B8 497 aa17.54■□□□□ 0.4
SHKBP1-218ENST00000598907 XRN2Q9H0D6 950 aaKnown RBP eCLIP17.54■□□□□ 0.49e-6■■■■■ 32.4
SHKBP1-218ENST00000598907 FAM205AQ6ZU69 1335 aa17.53■□□□□ 0.4
SHKBP1-218ENST00000598907 ANKRD18BA2A2Z9 1011 aa17.53■□□□□ 0.4
SHKBP1-218ENST00000598907 TNPO2O14787 897 aaKnown RBP17.53■□□□□ 0.4
SHKBP1-218ENST00000598907 EXOSC9Q06265 439 aaKnown RBP17.53■□□□□ 0.4
SHKBP1-218ENST00000598907 KSR2Q6VAB6 950 aa17.53■□□□□ 0.4
SHKBP1-218ENST00000598907 MIGA2Q7L4E1 593 aa17.53■□□□□ 0.4
SHKBP1-218ENST00000598907 CHMP3Q9Y3E7 222 aa17.53■□□□□ 0.4
SHKBP1-218ENST00000598907 H7C1W4 665 aa17.52■□□□□ 0.4
SHKBP1-218ENST00000598907 COL9A1P20849 921 aa17.52■□□□□ 0.4
SHKBP1-218ENST00000598907 GRIK5Q16478 980 aa17.52■□□□□ 0.4
SHKBP1-218ENST00000598907 DCAF15Q66K64 600 aa17.52■□□□□ 0.4
SHKBP1-218ENST00000598907 MOGSQ13724 837 aa17.51■□□□□ 0.39
SHKBP1-218ENST00000598907 C8orf58Q8NAV2 365 aa17.51■□□□□ 0.39
SHKBP1-218ENST00000598907 PXYLP1Q8TE99 480 aa17.51■□□□□ 0.39
SHKBP1-218ENST00000598907 ZNF341Q9BYN7 854 aa17.51■□□□□ 0.39
SHKBP1-218ENST00000598907 TMOD2Q9NZR1 351 aa17.51■□□□□ 0.39
SHKBP1-218ENST00000598907 RAPGEFL1Q9UHV5 662 aa17.51■□□□□ 0.39
SHKBP1-218ENST00000598907 CT47B1P0C2W7 299 aaPredicted RBP17.5■□□□□ 0.39
SHKBP1-218ENST00000598907 GYG1P46976 350 aa17.5■□□□□ 0.39
SHKBP1-218ENST00000598907 TSPYL6Q8N831 410 aa17.5■□□□□ 0.39
SHKBP1-218ENST00000598907 HOOK2Q96ED9 719 aa17.5■□□□□ 0.39
SHKBP1-218ENST00000598907 PLA2G12BQ9BX93 195 aa17.5■□□□□ 0.39
SHKBP1-218ENST00000598907 NBPF3Q9H094 633 aa17.5■□□□□ 0.39
SHKBP1-218ENST00000598907 C11orf49Q9H6J7 331 aa17.5■□□□□ 0.39
SHKBP1-218ENST00000598907 KCNH4Q9UQ05 1017 aa17.5■□□□□ 0.39
SHKBP1-218ENST00000598907 EYSQ5T1H1 3165 aa17.49■□□□□ 0.39
SHKBP1-218ENST00000598907 VAMP4O75379 141 aa17.49■□□□□ 0.39
SHKBP1-218ENST00000598907 CSF1RP07333 972 aa17.49■□□□□ 0.39
SHKBP1-218ENST00000598907 MDM2Q00987 491 aaPredicted RBP17.49■□□□□ 0.39
SHKBP1-218ENST00000598907 CCDC30Q5VVM6 783 aa17.49■□□□□ 0.39
SHKBP1-218ENST00000598907 IQSEC3Q9UPP2 1182 aaPredicted RBP17.49■□□□□ 0.39
SHKBP1-218ENST00000598907 CAPN2P17655 700 aa17.48■□□□□ 0.39
SHKBP1-218ENST00000598907 CHAF1AQ13111 956 aaPredicted RBP17.48■□□□□ 0.39
SHKBP1-218ENST00000598907 IFIT5Q13325 482 aaKnown RBP17.48■□□□□ 0.39
SHKBP1-218ENST00000598907 IRF5Q13568 498 aa17.48■□□□□ 0.39
SHKBP1-218ENST00000598907 GCKRQ14397 625 aa17.48■□□□□ 0.39
SHKBP1-218ENST00000598907 GPAT2Q6NUI2 795 aa17.48■□□□□ 0.39
SHKBP1-218ENST00000598907 ANKLE1Q8NAG6 615 aa17.48■□□□□ 0.39
SHKBP1-218ENST00000598907 TDRD7Q8NHU6 1098 aaKnown RBP17.48■□□□□ 0.39
SHKBP1-218ENST00000598907 TWISTNBQ3B726 338 aaPredicted RBP17.47■□□□□ 0.39
SHKBP1-218ENST00000598907 MAFAQ8NHW3 353 aaPredicted RBP17.47■□□□□ 0.39
SHKBP1-218ENST00000598907 TEKT1Q969V4 418 aa17.47■□□□□ 0.39
SHKBP1-218ENST00000598907 ZNF594Q96JF6 807 aaPredicted RBP17.47■□□□□ 0.39
SHKBP1-218ENST00000598907 CACNA1FO60840 1977 aa17.46■□□□□ 0.39
SHKBP1-218ENST00000598907 RPAP1Q9BWH6 1393 aaPredicted RBP17.46■□□□□ 0.39
SHKBP1-218ENST00000598907 POTEB2H3BUK9 544 aa17.46■□□□□ 0.39
SHKBP1-218ENST00000598907 HIBADHP31937 336 aaKnown RBP17.46■□□□□ 0.39
SHKBP1-218ENST00000598907 CASP7P55210 303 aa17.46■□□□□ 0.39
SHKBP1-218ENST00000598907 ZNF697Q5TEC3 545 aa17.46■□□□□ 0.39
SHKBP1-218ENST00000598907 GADL1Q6ZQY3 521 aa17.46■□□□□ 0.39
SHKBP1-218ENST00000598907 SMCR8Q8TEV9 937 aaPredicted RBP17.46■□□□□ 0.39
SHKBP1-218ENST00000598907 CNNM1Q9NRU3 951 aa17.46■□□□□ 0.39
SHKBP1-218ENST00000598907 CENPBP07199 599 aaPredicted RBP17.45■□□□□ 0.38
SHKBP1-218ENST00000598907 TRIM32Q13049 653 aa17.45■□□□□ 0.38
SHKBP1-218ENST00000598907 TAF7LQ5H9L4 462 aa17.45■□□□□ 0.38
SHKBP1-218ENST00000598907 FAM83AQ86UY5 434 aa17.45■□□□□ 0.38
SHKBP1-218ENST00000598907 COA7Q96BR5 231 aa17.45■□□□□ 0.38
SHKBP1-218ENST00000598907 FAM109BQ6ICB4 259 aaPredicted RBP17.44■□□□□ 0.38
SHKBP1-218ENST00000598907 G2E3Q7L622 706 aa17.44■□□□□ 0.38
SHKBP1-218ENST00000598907 CDX2Q99626 313 aaPredicted RBP17.44■□□□□ 0.38
SHKBP1-218ENST00000598907 PFASO15067 1338 aa17.44■□□□□ 0.38
SHKBP1-218ENST00000598907 COL2A1P02458 1487 aaPredicted RBP17.44■□□□□ 0.38
SHKBP1-218ENST00000598907 HMGCRP04035 888 aa17.43■□□□□ 0.38
SHKBP1-218ENST00000598907 TCP10Q12799 353 aa17.43■□□□□ 0.38
SHKBP1-218ENST00000598907 LDHAL6AQ6ZMR3 332 aa17.43■□□□□ 0.38
SHKBP1-218ENST00000598907 FAM84BQ96KN1 310 aaPredicted RBP17.43■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms