RNA–Protein interactions for RNA: ENST00000594399.1

USE1-204, Transcript of unconventional SNARE in the ER 1, humanhuman

TSL 2

Gene USE1, Length 613 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USE1-204ENST00000594399 WDR90Q96KV7 1748 aa13.02□□□□□ -0.32
USE1-204ENST00000594399 GPR75-ASB3A0A0A6YYF3 556 aa13.02□□□□□ -0.33
USE1-204ENST00000594399 EIF5BO60841 1220 aaKnown RBP13.02□□□□□ -0.33
USE1-204ENST00000594399 LMOD1P29536 600 aaPredicted RBP13.02□□□□□ -0.33
USE1-204ENST00000594399 RBM5P52756 815 aaKnown RBP eCLIP13.02□□□□□ -0.33
USE1-204ENST00000594399 ZNF280AP59817 542 aaPredicted RBP13.02□□□□□ -0.33
USE1-204ENST00000594399 FSTL1Q12841 308 aa13.02□□□□□ -0.33
USE1-204ENST00000594399 CCDC129Q6ZRS4 1044 aa13.02□□□□□ -0.33
USE1-204ENST00000594399 ZNF589Q86UQ0 364 aaPredicted RBP13.02□□□□□ -0.33
USE1-204ENST00000594399 LCORLQ8N3X6 602 aa13.02□□□□□ -0.33
USE1-204ENST00000594399 L3MBTL3Q96JM7 780 aaPredicted RBP13.02□□□□□ -0.33
USE1-204ENST00000594399 RIOK1Q9BRS2 568 aaKnown RBP13.02□□□□□ -0.33
USE1-204ENST00000594399 IL25Q9H293 177 aa13.02□□□□□ -0.33
USE1-204ENST00000594399 ARMT1Q9H993 441 aa13.02□□□□□ -0.33
USE1-204ENST00000594399 MYOZ2Q9NPC6 264 aa13.02□□□□□ -0.33
USE1-204ENST00000594399 GPRC5DQ9NZD1 345 aa13.02□□□□□ -0.33
USE1-204ENST00000594399 CNOT7Q9UIV1 285 aaKnown RBP13.02□□□□□ -0.33
USE1-204ENST00000594399 ECM29Q5VYK3 1845 aa13.02□□□□□ -0.33
USE1-204ENST00000594399 SHTN1A0MZ66 631 aa13.01□□□□□ -0.33
USE1-204ENST00000594399 PLCG2P16885 1265 aa13.01□□□□□ -0.33
USE1-204ENST00000594399 PPP4CP60510 307 aa13.01□□□□□ -0.33
USE1-204ENST00000594399 DYNLL1P63167 89 aaKnown RBP13.01□□□□□ -0.33
USE1-204ENST00000594399 DLGAP5Q15398 846 aa13.01□□□□□ -0.33
USE1-204ENST00000594399 MTMR14Q8NCE2 650 aa13.01□□□□□ -0.33
USE1-204ENST00000594399 SMC1BQ8NDV3 1235 aa13.01□□□□□ -0.33
USE1-204ENST00000594399 NAV1Q8NEY1 1877 aa13□□□□□ -0.33
USE1-204ENST00000594399 IQCA1LA6NCM1 817 aa13□□□□□ -0.33
USE1-204ENST00000594399 SPDYE2BA6NHP3 402 aa13□□□□□ -0.33
USE1-204ENST00000594399 H7C1D1 291 aa13□□□□□ -0.33
USE1-204ENST00000594399 REC8O95072 547 aa13□□□□□ -0.33
USE1-204ENST00000594399 SPDYE6P0CI01 402 aa13□□□□□ -0.33
USE1-204ENST00000594399 GNAT2P19087 354 aa13□□□□□ -0.33
USE1-204ENST00000594399 APLP1P51693 650 aa13□□□□□ -0.33
USE1-204ENST00000594399 KIF4BQ2VIQ3 1234 aa13□□□□□ -0.33
USE1-204ENST00000594399 APOBEC3HQ6NTF7 200 aaKnown RBP13□□□□□ -0.33
USE1-204ENST00000594399 STRBPQ96SI9 672 aaKnown RBP13□□□□□ -0.33
USE1-204ENST00000594399 CRNKL1Q9BZJ0 848 aaKnown RBP13□□□□□ -0.33
USE1-204ENST00000594399 PCDHAC2Q9Y5I4 1007 aa13□□□□□ -0.33
USE1-204ENST00000594399 CDK5RAP2Q96SN8 1893 aa12.99□□□□□ -0.33
USE1-204ENST00000594399 SCN4AP35499 1836 aa12.99□□□□□ -0.33
USE1-204ENST00000594399 FOCADQ5VW36 1801 aa12.99□□□□□ -0.33
USE1-204ENST00000594399 DDX60LQ5H9U9 1706 aaKnown RBP12.99□□□□□ -0.33
USE1-204ENST00000594399 CEP350Q5VT06 3117 aa12.99□□□□□ -0.33
USE1-204ENST00000594399 RHBDL3P58872 404 aa12.99□□□□□ -0.33
USE1-204ENST00000594399 KIAA1211Q6ZU35 1233 aa12.99□□□□□ -0.33
USE1-204ENST00000594399 TEX11Q8IYF3 940 aa12.99□□□□□ -0.33
USE1-204ENST00000594399 SH3RF3Q8TEJ3 882 aaPredicted RBP12.99□□□□□ -0.33
USE1-204ENST00000594399 ZBED3Q96IU2 234 aaPredicted RBP12.99□□□□□ -0.33
USE1-204ENST00000594399 ANO2Q9NQ90 1003 aa12.99□□□□□ -0.33
USE1-204ENST00000594399 RPAP1Q9BWH6 1393 aaPredicted RBP12.98□□□□□ -0.33
USE1-204ENST00000594399 POTECB2RU33 542 aa12.98□□□□□ -0.33
USE1-204ENST00000594399 WNT10BO00744 389 aa12.98□□□□□ -0.33
USE1-204ENST00000594399 MYO1BO43795 1136 aa12.98□□□□□ -0.33
USE1-204ENST00000594399 EPS15P42566 896 aa12.98□□□□□ -0.33
USE1-204ENST00000594399 TBC1D10BQ4KMP7 808 aaPredicted RBP12.98□□□□□ -0.33
USE1-204ENST00000594399 VPS53Q5VIR6 699 aa12.98□□□□□ -0.33
USE1-204ENST00000594399 CDC42EP5Q6NZY7 148 aa12.98□□□□□ -0.33
USE1-204ENST00000594399 SAMD7Q7Z3H4 446 aa12.98□□□□□ -0.33
USE1-204ENST00000594399 TRPM4Q8TD43 1214 aa12.98□□□□□ -0.33
USE1-204ENST00000594399 PRMT6Q96LA8 375 aaPredicted RBP12.98□□□□□ -0.33
USE1-204ENST00000594399 DSCC1Q9BVC3 393 aa12.98□□□□□ -0.33
USE1-204ENST00000594399 BACH2Q9BYV9 841 aa12.98□□□□□ -0.33
USE1-204ENST00000594399 LSG1Q9H089 658 aaKnown RBP12.98□□□□□ -0.33
USE1-204ENST00000594399 ADARB2Q9NS39 739 aaKnown RBP12.98□□□□□ -0.33
USE1-204ENST00000594399 USP40Q9NVE5 1235 aa12.98□□□□□ -0.33
USE1-204ENST00000594399 TMOD2Q9NZR1 351 aa12.98□□□□□ -0.33
USE1-204ENST00000594399 HACL1Q9UJ83 578 aa12.98□□□□□ -0.33
USE1-204ENST00000594399 SLC4A4Q9Y6R1 1079 aa12.98□□□□□ -0.33
USE1-204ENST00000594399 LAMB1P07942 1786 aa12.97□□□□□ -0.33
USE1-204ENST00000594399 ZMYM6O95789 1325 aa12.97□□□□□ -0.33
USE1-204ENST00000594399 FOXP2O15409 715 aa12.97□□□□□ -0.33
USE1-204ENST00000594399 PRKAB2O43741 272 aa12.97□□□□□ -0.33
USE1-204ENST00000594399 EGFRP00533 1210 aa12.97□□□□□ -0.33
USE1-204ENST00000594399 HSPD1P10809 573 aaKnown RBP12.97□□□□□ -0.33
USE1-204ENST00000594399 USP5P45974 858 aa12.97□□□□□ -0.33
USE1-204ENST00000594399 SPDYE2Q495Y8 402 aa12.97□□□□□ -0.33
USE1-204ENST00000594399 RBM26Q5T8P6 1007 aaKnown RBP12.97□□□□□ -0.33
USE1-204ENST00000594399 SDR42E1Q8WUS8 393 aa12.97□□□□□ -0.33
USE1-204ENST00000594399 DDRGK1Q96HY6 314 aa12.97□□□□□ -0.33
USE1-204ENST00000594399 TDRD3Q9H7E2 651 aaKnown RBP12.97□□□□□ -0.33
USE1-204ENST00000594399 LAMA4Q16363 1823 aa12.97□□□□□ -0.33
USE1-204ENST00000594399 FLT1P17948 1338 aa12.96□□□□□ -0.33
USE1-204ENST00000594399 CLRN2A0PK11 232 aa12.96□□□□□ -0.33
USE1-204ENST00000594399 GSG1L2A8MUP6 293 aa12.96□□□□□ -0.33
USE1-204ENST00000594399 EPB41L2O43491 1005 aaKnown RBP12.96□□□□□ -0.33
USE1-204ENST00000594399 APPP05067 770 aa12.96□□□□□ -0.33
USE1-204ENST00000594399 EPHX2P34913 555 aa12.96□□□□□ -0.33
USE1-204ENST00000594399 PTH1RQ03431 593 aa12.96□□□□□ -0.33
USE1-204ENST00000594399 NBPF9Q3BBW0 867 aa12.96□□□□□ -0.33
USE1-204ENST00000594399 IDI2Q9BXS1 227 aa12.96□□□□□ -0.33
USE1-204ENST00000594399 NACAP1Q9BZK3 213 aa12.96□□□□□ -0.33
USE1-204ENST00000594399 UPF2Q9HAU5 1272 aaKnown RBP12.96□□□□□ -0.33
USE1-204ENST00000594399 EPB41L4AQ9HCS5 686 aaPredicted RBP12.96□□□□□ -0.33
USE1-204ENST00000594399 ATP8A2Q9NTI2 1148 aa12.96□□□□□ -0.33
USE1-204ENST00000594399 PATL2C9JE40 543 aaKnown RBP12.95□□□□□ -0.34
USE1-204ENST00000594399 WDHD1O75717 1129 aaPredicted RBP12.95□□□□□ -0.34
USE1-204ENST00000594399 SEC24BO95487 1268 aa12.95□□□□□ -0.34
USE1-204ENST00000594399 TDO2P48775 406 aa12.95□□□□□ -0.34
USE1-204ENST00000594399 CACNB3P54284 484 aa12.95□□□□□ -0.34
USE1-204ENST00000594399 PICALMQ13492 652 aa12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms