RNA–Protein interactions for RNA: ENST00000589604.5

VPS4B-204, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 1 (best)

Gene VPS4B, Length 1,672 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-204ENST00000589604 MYO3BQ8WXR4 1341 aa12.57□□□□□ -0.4
VPS4B-204ENST00000589604 VEGFAP15692 232 aaPredicted RBP12.57□□□□□ -0.4
VPS4B-204ENST00000589604 DIXDC1Q155Q3 683 aa12.57□□□□□ -0.4
VPS4B-204ENST00000589604 TBC1D22AQ8WUA7 517 aa12.57□□□□□ -0.4
VPS4B-204ENST00000589604 ZBED3Q96IU2 234 aaPredicted RBP12.57□□□□□ -0.4
VPS4B-204ENST00000589604 IPO9Q96P70 1041 aaKnown RBP12.57□□□□□ -0.4
VPS4B-204ENST00000589604 ABCF2Q9UG63 623 aa12.57□□□□□ -0.4
VPS4B-204ENST00000589604 RBM26Q5T8P6 1007 aaKnown RBP12.56□□□□□ -0.4
VPS4B-204ENST00000589604 OSBP2Q969R2 916 aa12.56□□□□□ -0.4
VPS4B-204ENST00000589604 MYOZ2Q9NPC6 264 aa12.56□□□□□ -0.4
VPS4B-204ENST00000589604 HELLSQ9NRZ9 838 aa12.56□□□□□ -0.4
VPS4B-204ENST00000589604 PALD1Q9ULE6 856 aa12.56□□□□□ -0.4
VPS4B-204ENST00000589604 CCDC171Q6TFL3 1326 aa12.55□□□□□ -0.4
VPS4B-204ENST00000589604 TCRBV5S4A2TA0A5A2 114 aa12.55□□□□□ -0.4
VPS4B-204ENST00000589604 LMOD1P29536 600 aaPredicted RBP12.55□□□□□ -0.4
VPS4B-204ENST00000589604 HSPA4P34932 840 aa12.55□□□□□ -0.4
VPS4B-204ENST00000589604 ADD2P35612 726 aa12.55□□□□□ -0.4
VPS4B-204ENST00000589604 MECOMQ03112 1051 aa12.55□□□□□ -0.4
VPS4B-204ENST00000589604 TTF1Q15361 905 aaPredicted RBP12.55□□□□□ -0.4
VPS4B-204ENST00000589604 NBPF9Q3BBW0 867 aa12.55□□□□□ -0.4
VPS4B-204ENST00000589604 MCMDC2Q4G0Z9 681 aa12.55□□□□□ -0.4
VPS4B-204ENST00000589604 CCDC129Q6ZRS4 1044 aa12.55□□□□□ -0.4
VPS4B-204ENST00000589604 MAP4K1Q92918 833 aa12.55□□□□□ -0.4
VPS4B-204ENST00000589604 KCNB2Q92953 911 aa12.55□□□□□ -0.4
VPS4B-204ENST00000589604 ADARB2Q9NS39 739 aaKnown RBP12.55□□□□□ -0.4
VPS4B-204ENST00000589604 IQCA1LA6NCM1 817 aa12.54□□□□□ -0.4
VPS4B-204ENST00000589604 H7C1D1 291 aa12.54□□□□□ -0.4
VPS4B-204ENST00000589604 M0R2C6 588 aa12.54□□□□□ -0.4
VPS4B-204ENST00000589604 LDHBP07195 334 aaKnown RBP12.54□□□□□ -0.4
VPS4B-204ENST00000589604 ZFYP08048 801 aaPredicted RBP12.54□□□□□ -0.4
VPS4B-204ENST00000589604 KIF4BQ2VIQ3 1234 aa12.54□□□□□ -0.4
VPS4B-204ENST00000589604 CFAP100Q494V2 611 aa12.54□□□□□ -0.4
VPS4B-204ENST00000589604 ADGRA1Q86SQ6 560 aa12.54□□□□□ -0.4
VPS4B-204ENST00000589604 HS6ST3Q8IZP7 471 aa12.54□□□□□ -0.4
VPS4B-204ENST00000589604 NSUN4Q96CB9 384 aaKnown RBP12.54□□□□□ -0.4
VPS4B-204ENST00000589604 PRMT6Q96LA8 375 aaPredicted RBP12.54□□□□□ -0.4
VPS4B-204ENST00000589604 SCAF8Q9UPN6 1271 aaKnown RBP12.54□□□□□ -0.4
VPS4B-204ENST00000589604 MAST2Q6P0Q8 1798 aa12.54□□□□□ -0.4
VPS4B-204ENST00000589604 MAST3O60307 1309 aa12.54□□□□□ -0.4
VPS4B-204ENST00000589604 MYH2Q9UKX2 1941 aa12.54□□□□□ -0.4
VPS4B-204ENST00000589604 CRKP46108 304 aa12.54□□□□□ -0.4
VPS4B-204ENST00000589604 NECTIN1Q15223 517 aa12.54□□□□□ -0.4
VPS4B-204ENST00000589604 EAPPQ56P03 285 aaPredicted RBP12.54□□□□□ -0.4
VPS4B-204ENST00000589604 DLK2Q6UY11 383 aa12.54□□□□□ -0.4
VPS4B-204ENST00000589604 SUGT1Q9Y2Z0 365 aa12.54□□□□□ -0.4
VPS4B-204ENST00000589604 SPDYE2BA6NHP3 402 aa12.53□□□□□ -0.4
VPS4B-204ENST00000589604 WNT10BO00744 389 aa12.53□□□□□ -0.4
VPS4B-204ENST00000589604 FOXP2O15409 715 aa12.53□□□□□ -0.4
VPS4B-204ENST00000589604 SPDYE6P0CI01 402 aa12.53□□□□□ -0.4
VPS4B-204ENST00000589604 PDE6AP16499 860 aa12.53□□□□□ -0.4
VPS4B-204ENST00000589604 UBE3CQ15386 1083 aa12.53□□□□□ -0.4
VPS4B-204ENST00000589604 APOBEC3HQ6NTF7 200 aaKnown RBP12.53□□□□□ -0.4
VPS4B-204ENST00000589604 KIAA1211Q6ZU35 1233 aa12.53□□□□□ -0.4
VPS4B-204ENST00000589604 RASEFQ8IZ41 740 aa12.53□□□□□ -0.4
VPS4B-204ENST00000589604 OGFOD1Q8N543 542 aa12.53□□□□□ -0.4
VPS4B-204ENST00000589604 MTMR14Q8NCE2 650 aa12.53□□□□□ -0.4
VPS4B-204ENST00000589604 APPBP2Q92624 585 aa12.53□□□□□ -0.4
VPS4B-204ENST00000589604 PUS7LQ9H0K6 701 aaKnown RBP12.53□□□□□ -0.4
VPS4B-204ENST00000589604 LRP2BPQ9P2M1 347 aa12.53□□□□□ -0.4
VPS4B-204ENST00000589604 SERPINA10Q9UK55 444 aa12.53□□□□□ -0.4
VPS4B-204ENST00000589604 DAGLAQ9Y4D2 1042 aa12.53□□□□□ -0.4
VPS4B-204ENST00000589604 IDH1O75874 414 aaKnown RBP12.52□□□□□ -0.4
VPS4B-204ENST00000589604 ANAPC15P60006 121 aa12.52□□□□□ -0.4
VPS4B-204ENST00000589604 C1QTNF8P60827 252 aa12.52□□□□□ -0.4
VPS4B-204ENST00000589604 SLC9C2Q5TAH2 1124 aa12.52□□□□□ -0.4
VPS4B-204ENST00000589604 USP50Q70EL3 339 aaPredicted RBP12.52□□□□□ -0.4
VPS4B-204ENST00000589604 DDRGK1Q96HY6 314 aa12.52□□□□□ -0.4
VPS4B-204ENST00000589604 RAI14Q9P0K7 980 aa12.52□□□□□ -0.4
VPS4B-204ENST00000589604 RBM8AQ9Y5S9 174 aaKnown RBP12.52□□□□□ -0.4
VPS4B-204ENST00000589604 LAMA4Q16363 1823 aa12.52□□□□□ -0.41
VPS4B-204ENST00000589604 GAKO14976 1311 aa12.52□□□□□ -0.41
VPS4B-204ENST00000589604 ZNF532Q9HCE3 1301 aa12.52□□□□□ -0.41
VPS4B-204ENST00000589604 POLR2AP24928 1970 aaKnown RBP12.52□□□□□ -0.41
VPS4B-204ENST00000589604 CD2BP2O95400 341 aaKnown RBP12.51□□□□□ -0.41
VPS4B-204ENST00000589604 HDLBPQ00341 1268 aaKnown RBP12.51□□□□□ -0.41
VPS4B-204ENST00000589604 LRRFIP1Q32MZ4 808 aaKnown RBP12.51□□□□□ -0.41
VPS4B-204ENST00000589604 VPS53Q5VIR6 699 aa12.51□□□□□ -0.41
VPS4B-204ENST00000589604 SPTY2D1Q68D10 685 aaPredicted RBP12.51□□□□□ -0.41
VPS4B-204ENST00000589604 ZGPATQ8N5A5 531 aaKnown RBP12.51□□□□□ -0.41
VPS4B-204ENST00000589604 ZDHHC15Q96MV8 337 aa12.51□□□□□ -0.41
VPS4B-204ENST00000589604 TBC1D2Q9BYX2 928 aa12.51□□□□□ -0.41
VPS4B-204ENST00000589604 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.51□□□□□ -0.41
VPS4B-204ENST00000589604 PGAP2Q9UHJ9 254 aa12.51□□□□□ -0.41
VPS4B-204ENST00000589604 HDAC9Q9UKV0 1011 aa12.51□□□□□ -0.41
VPS4B-204ENST00000589604 SNX14Q9Y5W7 946 aa12.51□□□□□ -0.41
VPS4B-204ENST00000589604 ECM29Q5VYK3 1845 aa12.51□□□□□ -0.41
VPS4B-204ENST00000589604 CLRN2A0PK11 232 aa12.51□□□□□ -0.41
VPS4B-204ENST00000589604 RBM5P52756 815 aaKnown RBP eCLIP12.51□□□□□ -0.41
VPS4B-204ENST00000589604 FMR1Q06787 632 aaKnown RBP eCLIP12.51□□□□□ -0.41
VPS4B-204ENST00000589604 DLGAP5Q15398 846 aa12.51□□□□□ -0.41
VPS4B-204ENST00000589604 MAP1SQ66K74 1059 aaPredicted RBP12.51□□□□□ -0.41
VPS4B-204ENST00000589604 ZSCAN25Q6NSZ9 544 aa12.51□□□□□ -0.41
VPS4B-204ENST00000589604 HHIPL2Q6UWX4 724 aa12.51□□□□□ -0.41
VPS4B-204ENST00000589604 DZIP1Q86YF9 867 aaKnown RBP12.51□□□□□ -0.41
VPS4B-204ENST00000589604 MAGEB6Q8N7X4 407 aa12.51□□□□□ -0.41
VPS4B-204ENST00000589604 SNX21Q969T3 373 aa12.51□□□□□ -0.41
VPS4B-204ENST00000589604 TEKT1Q969V4 418 aa12.51□□□□□ -0.41
VPS4B-204ENST00000589604 MRIQ9BWK5 157 aa12.51□□□□□ -0.41
VPS4B-204ENST00000589604 TDRD3Q9H7E2 651 aaKnown RBP12.51□□□□□ -0.41
VPS4B-204ENST00000589604 TAF6LQ9Y6J9 622 aa12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms