RNA–Protein interactions for RNA: ENST00000588713.1

LIG3-211, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 467 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-211ENST00000588713 BACH2Q9BYV9 841 aa5.31□□□□□ -1.56
LIG3-211ENST00000588713 ELP3Q9H9T3 547 aa5.31□□□□□ -1.56
LIG3-211ENST00000588713 CPA4Q9UI42 421 aa5.31□□□□□ -1.56
LIG3-211ENST00000588713 CACNA1BQ00975 2339 aa5.31□□□□□ -1.56
LIG3-211ENST00000588713 ZFHX4Q86UP3 3567 aa5.31□□□□□ -1.56
LIG3-211ENST00000588713 HEG1Q9ULI3 1381 aa5.3□□□□□ -1.56
LIG3-211ENST00000588713 ADGRA2Q96PE1 1338 aa5.3□□□□□ -1.56
LIG3-211ENST00000588713 RNMTO43148 476 aaKnown RBP5.3□□□□□ -1.56
LIG3-211ENST00000588713 PPP1R12BO60237 982 aaPredicted RBP5.3□□□□□ -1.56
LIG3-211ENST00000588713 ADCY3O60266 1144 aa5.3□□□□□ -1.56
LIG3-211ENST00000588713 GFRA3O60609 400 aa5.3□□□□□ -1.56
LIG3-211ENST00000588713 SKIV2LQ15477 1246 aaKnown RBP5.3□□□□□ -1.56
LIG3-211ENST00000588713 BBXQ8WY36 941 aaPredicted RBP5.3□□□□□ -1.56
LIG3-211ENST00000588713 TEX13AQ9BXU3 409 aaPredicted RBP5.3□□□□□ -1.56
LIG3-211ENST00000588713 PAK6Q9NQU5 681 aaPredicted RBP5.3□□□□□ -1.56
LIG3-211ENST00000588713 GABRQQ9UN88 632 aa5.3□□□□□ -1.56
LIG3-211ENST00000588713 BDP1A6H8Y1 2624 aa5.29□□□□□ -1.56
LIG3-211ENST00000588713 DUOX1Q9NRD9 1551 aa5.29□□□□□ -1.56
LIG3-211ENST00000588713 PFASO15067 1338 aa5.29□□□□□ -1.56
LIG3-211ENST00000588713 CFAP54Q96N23 3096 aa5.29□□□□□ -1.56
LIG3-211ENST00000588713 PPP1R3GB7ZBB8 358 aa5.29□□□□□ -1.56
LIG3-211ENST00000588713 GPTP24298 496 aa5.29□□□□□ -1.56
LIG3-211ENST00000588713 IREB2P48200 963 aaKnown RBP5.29□□□□□ -1.56
LIG3-211ENST00000588713 MFSD10Q14728 455 aa5.29□□□□□ -1.56
LIG3-211ENST00000588713 RALBP1Q15311 655 aa5.29□□□□□ -1.56
LIG3-211ENST00000588713 LRRC26Q2I0M4 334 aa5.29□□□□□ -1.56
LIG3-211ENST00000588713 PROX2Q3B8N5 592 aa5.29□□□□□ -1.56
LIG3-211ENST00000588713 AKNAD1Q5T1N1 836 aa5.29□□□□□ -1.56
LIG3-211ENST00000588713 RSBN1LQ6PCB5 846 aaPredicted RBP5.29□□□□□ -1.56
LIG3-211ENST00000588713 ANKLE1Q8NAG6 615 aa5.29□□□□□ -1.56
LIG3-211ENST00000588713 AGBL3Q8NEM8 1001 aa5.29□□□□□ -1.56
LIG3-211ENST00000588713 ANKK1Q8NFD2 765 aa5.29□□□□□ -1.56
LIG3-211ENST00000588713 PNISRQ8TF01 805 aaKnown RBP5.29□□□□□ -1.56
LIG3-211ENST00000588713 NLRP3Q96P20 1036 aa5.29□□□□□ -1.56
LIG3-211ENST00000588713 XRN2Q9H0D6 950 aaKnown RBP eCLIP5.29□□□□□ -1.56
LIG3-211ENST00000588713 RSPH6AQ9H0K4 717 aa5.29□□□□□ -1.56
LIG3-211ENST00000588713 PRDM12Q9H4Q4 367 aa5.29□□□□□ -1.56
LIG3-211ENST00000588713 ZNF576Q9H609 170 aa5.29□□□□□ -1.56
LIG3-211ENST00000588713 EMILIN3Q9NT22 766 aa5.29□□□□□ -1.56
LIG3-211ENST00000588713 CXXC1Q9P0U4 656 aaPredicted RBP5.29□□□□□ -1.56
LIG3-211ENST00000588713 PRKAG2Q9UGJ0 569 aa5.29□□□□□ -1.56
LIG3-211ENST00000588713 RALYQ9UKM9 306 aaKnown RBP5.29□□□□□ -1.56
LIG3-211ENST00000588713 NSFL1CQ9UNZ2 370 aaKnown RBP5.29□□□□□ -1.56
LIG3-211ENST00000588713 PCDHGA10Q9Y5H3 936 aa5.29□□□□□ -1.56
LIG3-211ENST00000588713 DDX60LQ5H9U9 1706 aaKnown RBP5.28□□□□□ -1.56
LIG3-211ENST00000588713 PI4K2BG5E9Z4 385 aa5.28□□□□□ -1.56
LIG3-211ENST00000588713 WNT10BO00744 389 aa5.28□□□□□ -1.56
LIG3-211ENST00000588713 BBOX1O75936 387 aa5.28□□□□□ -1.56
LIG3-211ENST00000588713 RGS20O76081 388 aa5.28□□□□□ -1.56
LIG3-211ENST00000588713 CAPN2P17655 700 aa5.28□□□□□ -1.56
LIG3-211ENST00000588713 DNAJB2P25686 324 aa5.28□□□□□ -1.56
LIG3-211ENST00000588713 GTF2A2P52657 109 aa5.28□□□□□ -1.56
LIG3-211ENST00000588713 FCGRTP55899 365 aa5.28□□□□□ -1.56
LIG3-211ENST00000588713 ACAP1Q15027 740 aa5.28□□□□□ -1.56
LIG3-211ENST00000588713 AAK1Q2M2I8 961 aa5.28□□□□□ -1.56
LIG3-211ENST00000588713 TYW1BQ6NUM6 668 aa5.28□□□□□ -1.56
LIG3-211ENST00000588713 APOBEC3FQ8IUX4 373 aaKnown RBP5.28□□□□□ -1.56
LIG3-211ENST00000588713 ANKS1AQ92625 1134 aa5.28□□□□□ -1.56
LIG3-211ENST00000588713 FBXW7Q969H0 707 aa5.28□□□□□ -1.56
LIG3-211ENST00000588713 CNTNAP3BQ96NU0 1288 aa5.28□□□□□ -1.56
LIG3-211ENST00000588713 CNTNAP3Q9BZ76 1288 aa5.28□□□□□ -1.56
LIG3-211ENST00000588713 RABGEF1Q9UJ41 708 aa5.28□□□□□ -1.56
LIG3-211ENST00000588713 LAS1LQ9Y4W2 734 aaKnown RBP5.28□□□□□ -1.56
LIG3-211ENST00000588713 ZDBF2Q9HCK1 2354 aa5.28□□□□□ -1.56
LIG3-211ENST00000588713 NCOR1O75376 2440 aa5.27□□□□□ -1.57
LIG3-211ENST00000588713 C5orf42Q9H799 3197 aa5.27□□□□□ -1.57
LIG3-211ENST00000588713 BTBD19C9JJ37 291 aa5.27□□□□□ -1.57
LIG3-211ENST00000588713 FLT3LGP49771 235 aa5.27□□□□□ -1.57
LIG3-211ENST00000588713 SUSD4Q5VX71 490 aa5.27□□□□□ -1.57
LIG3-211ENST00000588713 ANKRD13AQ8IZ07 590 aa5.27□□□□□ -1.57
LIG3-211ENST00000588713 NGEFQ8N5V2 710 aa5.27□□□□□ -1.57
LIG3-211ENST00000588713 HELBQ8NG08 1087 aaPredicted RBP5.27□□□□□ -1.57
LIG3-211ENST00000588713 TIFAQ96CG3 184 aa5.27□□□□□ -1.57
LIG3-211ENST00000588713 RNPC3Q96LT9 517 aaKnown RBP5.27□□□□□ -1.57
LIG3-211ENST00000588713 EYA3Q99504 573 aa5.27□□□□□ -1.57
LIG3-211ENST00000588713 IRX2Q9BZI1 471 aaPredicted RBP5.27□□□□□ -1.57
LIG3-211ENST00000588713 KCNH6Q9H252 994 aa5.27□□□□□ -1.57
LIG3-211ENST00000588713 POLLQ9UGP5 575 aa5.27□□□□□ -1.57
LIG3-211ENST00000588713 RCAN3Q9UKA8 241 aa5.27□□□□□ -1.57
LIG3-211ENST00000588713 UBR2Q8IWV8 1755 aa5.27□□□□□ -1.57
LIG3-211ENST00000588713 WDFY4Q6ZS81 3184 aa5.26□□□□□ -1.57
LIG3-211ENST00000588713 UBN2Q6ZU65 1347 aa5.26□□□□□ -1.57
LIG3-211ENST00000588713 MED19A0JLT2 244 aaPredicted RBP5.26□□□□□ -1.57
LIG3-211ENST00000588713 U2AF1L5P0DN76 240 aaPredicted RBP5.26□□□□□ -1.57
LIG3-211ENST00000588713 ID4P47928 161 aa5.26□□□□□ -1.57
LIG3-211ENST00000588713 GPSM2P81274 684 aa5.26□□□□□ -1.57
LIG3-211ENST00000588713 U2AF1Q01081 240 aaKnown RBP eCLIP5.26□□□□□ -1.57
LIG3-211ENST00000588713 GRAPQ13588 217 aa5.26□□□□□ -1.57
LIG3-211ENST00000588713 ADGRE1Q14246 886 aa5.26□□□□□ -1.57
LIG3-211ENST00000588713 NFKBIBQ15653 356 aa5.26□□□□□ -1.57
LIG3-211ENST00000588713 SULT6B1Q6IMI4 303 aa5.26□□□□□ -1.57
LIG3-211ENST00000588713 ZNF790Q6PG37 636 aa5.26□□□□□ -1.57
LIG3-211ENST00000588713 C17orf99Q6UX52 265 aa5.26□□□□□ -1.57
LIG3-211ENST00000588713 DDX46Q7L014 1031 aaKnown RBP5.26□□□□□ -1.57
LIG3-211ENST00000588713 GRAPLQ8TC17 118 aaPredicted RBP5.26□□□□□ -1.57
LIG3-211ENST00000588713 NECTIN2Q92692 538 aa5.26□□□□□ -1.57
LIG3-211ENST00000588713 FMNL2Q96PY5 1086 aa5.26□□□□□ -1.57
LIG3-211ENST00000588713 MXD3Q9BW11 206 aa5.26□□□□□ -1.57
LIG3-211ENST00000588713 DEFB129Q9H1M3 183 aa5.26□□□□□ -1.57
LIG3-211ENST00000588713 PRDM5Q9NQX1 630 aaPredicted RBP5.26□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 84 ms