RNA–Protein interactions for RNA: ENST00000588323.1

VPS4B-203, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 3

Gene VPS4B, Length 463 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-203ENST00000588323 RPS26P11Q5JNZ5 115 aaPredicted RBP6.59□□□□□ -1.35
VPS4B-203ENST00000588323 PRPF40BQ6NWY9 871 aaKnown RBP6.59□□□□□ -1.35
VPS4B-203ENST00000588323 KRTAP9-9Q9BYP9 154 aa6.59□□□□□ -1.35
VPS4B-203ENST00000588323 KRTAP9-4Q9BYQ2 154 aa6.59□□□□□ -1.35
VPS4B-203ENST00000588323 NIF3L1Q9GZT8 377 aa6.59□□□□□ -1.35
VPS4B-203ENST00000588323 DNAJC25Q9H1X3 360 aa6.59□□□□□ -1.35
VPS4B-203ENST00000588323 LGR6Q9HBX8 967 aa6.59□□□□□ -1.35
VPS4B-203ENST00000588323 ABCB6Q9NP58 842 aa6.59□□□□□ -1.35
VPS4B-203ENST00000588323 C1GALT1Q9NS00 363 aa6.59□□□□□ -1.35
VPS4B-203ENST00000588323 TRAK1Q9UPV9 953 aa6.59□□□□□ -1.35
VPS4B-203ENST00000588323 SYNGAP1Q96PV0 1343 aa6.58□□□□□ -1.36
VPS4B-203ENST00000588323 TMEM238LA0A1B0GVL6 79 aa6.58□□□□□ -1.36
VPS4B-203ENST00000588323 DYNC1LI2O43237 492 aaPredicted RBP6.58□□□□□ -1.36
VPS4B-203ENST00000588323 SEZ6L2Q6UXD5 910 aa6.58□□□□□ -1.36
VPS4B-203ENST00000588323 CBLL1Q75N03 491 aa6.58□□□□□ -1.36
VPS4B-203ENST00000588323 C14orf37Q86TY3 774 aa6.58□□□□□ -1.36
VPS4B-203ENST00000588323 PPP1R9AQ9ULJ8 1098 aa6.58□□□□□ -1.36
VPS4B-203ENST00000588323 EIF1AYO14602 144 aaKnown RBP6.57□□□□□ -1.36
VPS4B-203ENST00000588323 HNRNPUQ00839 825 aaKnown RBP eCLIP6.57□□□□□ -1.36
VPS4B-203ENST00000588323 CYP27C1Q4G0S4 372 aa6.57□□□□□ -1.36
VPS4B-203ENST00000588323 OGFOD3Q6PK18 319 aa6.57□□□□□ -1.36
VPS4B-203ENST00000588323 ASIC4Q96FT7 647 aa6.57□□□□□ -1.36
VPS4B-203ENST00000588323 PIDD1Q9HB75 910 aa6.57□□□□□ -1.36
VPS4B-203ENST00000588323 PAK6Q9NQU5 681 aaPredicted RBP6.57□□□□□ -1.36
VPS4B-203ENST00000588323 GPR182O15218 404 aa6.56□□□□□ -1.36
VPS4B-203ENST00000588323 TMPRSS2O15393 492 aa6.56□□□□□ -1.36
VPS4B-203ENST00000588323 SLFN14P0C7P3 912 aa6.56□□□□□ -1.36
VPS4B-203ENST00000588323 LIG1P18858 919 aa6.56□□□□□ -1.36
VPS4B-203ENST00000588323 ZNF157P51786 506 aaPredicted RBP6.56□□□□□ -1.36
VPS4B-203ENST00000588323 ZC3H12CQ9C0D7 883 aaKnown RBP6.56□□□□□ -1.36
VPS4B-203ENST00000588323 ATXN3LQ9H3M9 355 aa6.56□□□□□ -1.36
VPS4B-203ENST00000588323 CCDC86Q9H6F5 360 aaKnown RBP6.56□□□□□ -1.36
VPS4B-203ENST00000588323 SLC5A6Q9Y289 635 aa6.56□□□□□ -1.36
VPS4B-203ENST00000588323 JUNBP17275 347 aaPredicted RBP6.55□□□□□ -1.36
VPS4B-203ENST00000588323 ID3Q02535 119 aa6.55□□□□□ -1.36
VPS4B-203ENST00000588323 FAAP100Q0VG06 881 aa6.55□□□□□ -1.36
VPS4B-203ENST00000588323 GRM2Q14416 872 aa6.55□□□□□ -1.36
VPS4B-203ENST00000588323 DTHD1Q6ZMT9 781 aa6.55□□□□□ -1.36
VPS4B-203ENST00000588323 WDR89Q96FK6 387 aaPredicted RBP6.55□□□□□ -1.36
VPS4B-203ENST00000588323 DMRTB1Q96MA1 342 aa6.55□□□□□ -1.36
VPS4B-203ENST00000588323 CSRNP1Q96S65 589 aa6.55□□□□□ -1.36
VPS4B-203ENST00000588323 PPP4R2Q9NY27 417 aa6.55□□□□□ -1.36
VPS4B-203ENST00000588323 CRIM1Q9NZV1 1036 aa6.55□□□□□ -1.36
VPS4B-203ENST00000588323 ARID1BQ8NFD5 2236 aaPredicted RBP6.55□□□□□ -1.36
VPS4B-203ENST00000588323 ITGB5P18084 799 aa6.54□□□□□ -1.36
VPS4B-203ENST00000588323 PPP2R3AQ06190 1150 aa6.54□□□□□ -1.36
VPS4B-203ENST00000588323 COL19A1Q14993 1142 aa6.54□□□□□ -1.36
VPS4B-203ENST00000588323 TXNDC2Q86VQ3 553 aa6.54□□□□□ -1.36
VPS4B-203ENST00000588323 STK11IPQ8N1F8 1099 aa6.54□□□□□ -1.36
VPS4B-203ENST00000588323 EPS8L3Q8TE67 593 aaKnown RBP6.54□□□□□ -1.36
VPS4B-203ENST00000588323 FANCD2OSQ96PS1 177 aa6.54□□□□□ -1.36
VPS4B-203ENST00000588323 ZNF862O60290 1169 aa6.53□□□□□ -1.36
VPS4B-203ENST00000588323 IGHA2P01877 340 aa6.53□□□□□ -1.36
VPS4B-203ENST00000588323 GSTP1P09211 210 aaKnown RBP6.53□□□□□ -1.36
VPS4B-203ENST00000588323 FAM87AP0C7U9 286 aa6.53□□□□□ -1.36
VPS4B-203ENST00000588323 FCGRTP55899 365 aa6.53□□□□□ -1.36
VPS4B-203ENST00000588323 CDK5R2Q13319 367 aa6.53□□□□□ -1.36
VPS4B-203ENST00000588323 PLCL1Q15111 1095 aa6.53□□□□□ -1.36
VPS4B-203ENST00000588323 OGFOD2Q6N063 350 aa6.53□□□□□ -1.36
VPS4B-203ENST00000588323 GLIS3Q8NEA6 775 aa6.53□□□□□ -1.36
VPS4B-203ENST00000588323 CCER1Q8TC90 406 aaPredicted RBP6.53□□□□□ -1.36
VPS4B-203ENST00000588323 BCL7CQ8WUZ0 217 aaPredicted RBP6.53□□□□□ -1.36
VPS4B-203ENST00000588323 ALKBH8Q96BT7 664 aaKnown RBP6.53□□□□□ -1.36
VPS4B-203ENST00000588323 MISP3Q96FF7 219 aa6.53□□□□□ -1.36
VPS4B-203ENST00000588323 KRT82Q9NSB4 513 aa6.53□□□□□ -1.36
VPS4B-203ENST00000588323 NLRP2Q9NX02 1062 aa6.53□□□□□ -1.36
VPS4B-203ENST00000588323 GPN3Q9UHW5 284 aaPredicted RBP6.53□□□□□ -1.36
VPS4B-203ENST00000588323 KIF4BQ2VIQ3 1234 aa6.52□□□□□ -1.37
VPS4B-203ENST00000588323 SMYD4Q8IYR2 804 aaPredicted RBP6.52□□□□□ -1.37
VPS4B-203ENST00000588323 KCNB2Q92953 911 aa6.52□□□□□ -1.37
VPS4B-203ENST00000588323 RBCK1Q9BYM8 510 aa6.52□□□□□ -1.37
VPS4B-203ENST00000588323 TMEM39AQ9NV64 488 aa6.52□□□□□ -1.37
VPS4B-203ENST00000588323 RNGTTO60942 597 aaKnown RBP6.51□□□□□ -1.37
VPS4B-203ENST00000588323 PDE4CQ08493 712 aa6.51□□□□□ -1.37
VPS4B-203ENST00000588323 TTLL4Q14679 1199 aa6.51□□□□□ -1.37
VPS4B-203ENST00000588323 ZNF574Q6ZN55 896 aaPredicted RBP6.51□□□□□ -1.37
VPS4B-203ENST00000588323 PLD6Q8N2A8 252 aaKnown RBP6.51□□□□□ -1.37
VPS4B-203ENST00000588323 NETO1Q8TDF5 533 aa6.51□□□□□ -1.37
VPS4B-203ENST00000588323 DISC1Q9NRI5 854 aa6.51□□□□□ -1.37
VPS4B-203ENST00000588323 XRCC5P13010 732 aaKnown RBP6.5□□□□□ -1.37
VPS4B-203ENST00000588323 HCLS1P14317 486 aaPredicted RBP6.5□□□□□ -1.37
VPS4B-203ENST00000588323 FZD5Q13467 585 aa6.5□□□□□ -1.37
VPS4B-203ENST00000588323 ARHGAP27Q6ZUM4 889 aa6.5□□□□□ -1.37
VPS4B-203ENST00000588323 SPRED2Q7Z698 418 aa6.5□□□□□ -1.37
VPS4B-203ENST00000588323 FAM181AQ8N9Y4 354 aa6.5□□□□□ -1.37
VPS4B-203ENST00000588323 PCOLCE2Q9UKZ9 415 aa6.5□□□□□ -1.37
VPS4B-203ENST00000588323 PCDHGC5Q9Y5F6 944 aa6.5□□□□□ -1.37
VPS4B-203ENST00000588323 BIN1O00499 593 aa6.49□□□□□ -1.37
VPS4B-203ENST00000588323 BNIP3Q12983 259 aa6.49□□□□□ -1.37
VPS4B-203ENST00000588323 ZNF792Q3KQV3 632 aa6.49□□□□□ -1.37
VPS4B-203ENST00000588323 PI16Q6UXB8 463 aa6.49□□□□□ -1.37
VPS4B-203ENST00000588323 SULF2Q8IWU5 870 aa6.49□□□□□ -1.37
VPS4B-203ENST00000588323 POU5F2Q8N7G0 328 aa6.49□□□□□ -1.37
VPS4B-203ENST00000588323 RETREG2Q8NC44 543 aa6.49□□□□□ -1.37
VPS4B-203ENST00000588323 ARID3AQ99856 593 aa6.49□□□□□ -1.37
VPS4B-203ENST00000588323 BCO2Q9BYV7 579 aa6.49□□□□□ -1.37
VPS4B-203ENST00000588323 SSU72Q9NP77 194 aaKnown RBP6.49□□□□□ -1.37
VPS4B-203ENST00000588323 AKAP2Q9Y2D5 859 aa6.49□□□□□ -1.37
VPS4B-203ENST00000588323 KRTAP4-8A0A0G2JLE6 195 aa6.48□□□□□ -1.37
VPS4B-203ENST00000588323 PAPLNO95428 1278 aa6.48□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms