RNA–Protein interactions for RNA: ENST00000588109.5

LIG3-210, Transcript of DNA ligase 3, humanhuman

TSL 4

Gene LIG3, Length 592 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-210ENST00000588109 CARMIL3Q8ND23 1372 aa6.6□□□□□ -1.35
LIG3-210ENST00000588109 UTYO14607 1347 aa6.6□□□□□ -1.35
LIG3-210ENST00000588109 SH3TC1Q8TE82 1336 aa6.6□□□□□ -1.35
LIG3-210ENST00000588109 H7C1W4 665 aa6.6□□□□□ -1.35
LIG3-210ENST00000588109 IRS4O14654 1257 aaPredicted RBP6.6□□□□□ -1.35
LIG3-210ENST00000588109 AVPP01185 164 aa6.6□□□□□ -1.35
LIG3-210ENST00000588109 PCCAP05165 728 aaPredicted RBP6.6□□□□□ -1.35
LIG3-210ENST00000588109 HSP90B1P14625 803 aaKnown RBP6.6□□□□□ -1.35
LIG3-210ENST00000588109 RAB15P59190 212 aa6.6□□□□□ -1.35
LIG3-210ENST00000588109 DHX9Q08211 1270 aaKnown RBP6.6□□□□□ -1.35
LIG3-210ENST00000588109 NFIXQ14938 502 aa6.6□□□□□ -1.35
LIG3-210ENST00000588109 R3HDM1Q15032 1099 aaKnown RBP6.6□□□□□ -1.35
LIG3-210ENST00000588109 RNF20Q5VTR2 975 aa6.6□□□□□ -1.35
LIG3-210ENST00000588109 MSL1Q68DK7 614 aa6.6□□□□□ -1.35
LIG3-210ENST00000588109 TPTE2Q6XPS3 522 aa6.6□□□□□ -1.35
LIG3-210ENST00000588109 RPAP2Q8IXW5 612 aaPredicted RBP6.6□□□□□ -1.35
LIG3-210ENST00000588109 SUCLG2Q96I99 432 aa6.6□□□□□ -1.35
LIG3-210ENST00000588109 OCSTAMPQ9BR26 566 aa6.6□□□□□ -1.35
LIG3-210ENST00000588109 CHMP3Q9Y3E7 222 aa6.6□□□□□ -1.35
LIG3-210ENST00000588109 COL24A1Q17RW2 1714 aa6.59□□□□□ -1.35
LIG3-210ENST00000588109 CDHR2Q9BYE9 1310 aa6.59□□□□□ -1.35
LIG3-210ENST00000588109 CAPN5O15484 640 aaPredicted RBP6.59□□□□□ -1.35
LIG3-210ENST00000588109 SRGAP3O43295 1099 aa6.59□□□□□ -1.35
LIG3-210ENST00000588109 HMMRO75330 724 aa6.59□□□□□ -1.35
LIG3-210ENST00000588109 NTSR2O95665 410 aa6.59□□□□□ -1.35
LIG3-210ENST00000588109 SERPINB2P05120 415 aa6.59□□□□□ -1.35
LIG3-210ENST00000588109 MMP10P09238 476 aa6.59□□□□□ -1.35
LIG3-210ENST00000588109 WDR4P57081 412 aaKnown RBP6.59□□□□□ -1.35
LIG3-210ENST00000588109 ST5P78524 1137 aa6.59□□□□□ -1.35
LIG3-210ENST00000588109 VAC14Q08AM6 782 aa6.59□□□□□ -1.35
LIG3-210ENST00000588109 SEMA3FQ13275 785 aa6.59□□□□□ -1.35
LIG3-210ENST00000588109 CEP85Q6P2H3 762 aa6.59□□□□□ -1.35
LIG3-210ENST00000588109 CCDC116Q8IYX3 515 aa6.59□□□□□ -1.35
LIG3-210ENST00000588109 CNBD1Q8NA66 436 aa6.59□□□□□ -1.35
LIG3-210ENST00000588109 RWDD1Q9H446 243 aaPredicted RBP6.59□□□□□ -1.35
LIG3-210ENST00000588109 BICC1Q9H694 974 aaKnown RBP6.59□□□□□ -1.35
LIG3-210ENST00000588109 PGPEP1Q9NXJ5 209 aa6.59□□□□□ -1.35
LIG3-210ENST00000588109 PARP3Q9Y6F1 533 aa6.59□□□□□ -1.35
LIG3-210ENST00000588109 PDE8AO60658 829 aa6.58□□□□□ -1.36
LIG3-210ENST00000588109 HCLS1P14317 486 aaPredicted RBP6.58□□□□□ -1.36
LIG3-210ENST00000588109 TM4SF1P30408 202 aa6.58□□□□□ -1.36
LIG3-210ENST00000588109 CASP7P55210 303 aa6.58□□□□□ -1.36
LIG3-210ENST00000588109 ATP8B2P98198 1209 aa6.58□□□□□ -1.36
LIG3-210ENST00000588109 DDR1Q08345 913 aa6.58□□□□□ -1.36
LIG3-210ENST00000588109 LMBR1LQ6UX01 489 aa6.58□□□□□ -1.36
LIG3-210ENST00000588109 SYNE4Q8N205 404 aa6.58□□□□□ -1.36
LIG3-210ENST00000588109 ANKRD44Q8N8A2 993 aa6.58□□□□□ -1.36
LIG3-210ENST00000588109 SLC16A10Q8TF71 515 aa6.58□□□□□ -1.36
LIG3-210ENST00000588109 CCDC85AQ96PX6 553 aaPredicted RBP6.58□□□□□ -1.36
LIG3-210ENST00000588109 PDGFDQ9GZP0 370 aaPredicted RBP6.58□□□□□ -1.36
LIG3-210ENST00000588109 PNMA6EA0A0J9YXQ4 647 aa6.57□□□□□ -1.36
LIG3-210ENST00000588109 POLRMTO00411 1230 aaKnown RBP6.57□□□□□ -1.36
LIG3-210ENST00000588109 ST8SIA5O15466 376 aa6.57□□□□□ -1.36
LIG3-210ENST00000588109 ZBTB7AO95365 584 aa6.57□□□□□ -1.36
LIG3-210ENST00000588109 ZIC2O95409 532 aaPredicted RBP6.57□□□□□ -1.36
LIG3-210ENST00000588109 POLD1P28340 1107 aa6.57□□□□□ -1.36
LIG3-210ENST00000588109 SMCPP49901 116 aaPredicted RBP6.57□□□□□ -1.36
LIG3-210ENST00000588109 CTSWP56202 376 aa6.57□□□□□ -1.36
LIG3-210ENST00000588109 FOXO4P98177 505 aa6.57□□□□□ -1.36
LIG3-210ENST00000588109 OS9Q13438 667 aaPredicted RBP6.57□□□□□ -1.36
LIG3-210ENST00000588109 HDAC1Q13547 482 aaPredicted RBP6.57□□□□□ -1.36
LIG3-210ENST00000588109 IRF5Q13568 498 aa6.57□□□□□ -1.36
LIG3-210ENST00000588109 CCDC57Q2TAC2 916 aa6.57□□□□□ -1.36
LIG3-210ENST00000588109 TAF7LQ5H9L4 462 aa6.57□□□□□ -1.36
LIG3-210ENST00000588109 EPHA10Q5JZY3 1008 aa6.57□□□□□ -1.36
LIG3-210ENST00000588109 PRR5LQ6MZQ0 368 aa6.57□□□□□ -1.36
LIG3-210ENST00000588109 CENPQQ7L2Z9 268 aaPredicted RBP6.57□□□□□ -1.36
LIG3-210ENST00000588109 POM121Q96HA1 1249 aa6.57□□□□□ -1.36
LIG3-210ENST00000588109 KAZALD1Q96I82 304 aa6.57□□□□□ -1.36
LIG3-210ENST00000588109 NLRP3Q96P20 1036 aa6.57□□□□□ -1.36
LIG3-210ENST00000588109 PLA2G12BQ9BX93 195 aa6.57□□□□□ -1.36
LIG3-210ENST00000588109 AAASQ9NRG9 546 aa6.57□□□□□ -1.36
LIG3-210ENST00000588109 LAMB2P55268 1798 aa6.57□□□□□ -1.36
LIG3-210ENST00000588109 ABCC12Q96J65 1359 aa6.57□□□□□ -1.36
LIG3-210ENST00000588109 DDX60Q8IY21 1712 aaKnown RBP6.56□□□□□ -1.36
LIG3-210ENST00000588109 ANKRD18BA2A2Z9 1011 aa6.56□□□□□ -1.36
LIG3-210ENST00000588109 SURF6O75683 361 aaKnown RBP6.56□□□□□ -1.36
LIG3-210ENST00000588109 UPP2O95045 317 aa6.56□□□□□ -1.36
LIG3-210ENST00000588109 IGHDP01880 384 aa6.56□□□□□ -1.36
LIG3-210ENST00000588109 NR3C2P08235 984 aa6.56□□□□□ -1.36
LIG3-210ENST00000588109 SOX11P35716 441 aa6.56□□□□□ -1.36
LIG3-210ENST00000588109 IFIT5Q13325 482 aaKnown RBP6.56□□□□□ -1.36
LIG3-210ENST00000588109 MTX1Q13505 466 aa6.56□□□□□ -1.36
LIG3-210ENST00000588109 SCARF1Q14162 830 aa6.56□□□□□ -1.36
LIG3-210ENST00000588109 RABL6Q3YEC7 729 aaPredicted RBP6.56□□□□□ -1.36
LIG3-210ENST00000588109 SLFNL1Q499Z3 407 aa6.56□□□□□ -1.36
LIG3-210ENST00000588109 CCDC152Q4G0S7 254 aa6.56□□□□□ -1.36
LIG3-210ENST00000588109 INTS6LQ5JSJ4 861 aaKnown RBP6.56□□□□□ -1.36
LIG3-210ENST00000588109 SLC10A5Q5PT55 438 aa6.56□□□□□ -1.36
LIG3-210ENST00000588109 SIRT2Q8IXJ6 389 aa6.56□□□□□ -1.36
LIG3-210ENST00000588109 CRIPAKQ8N1N5 446 aa6.56□□□□□ -1.36
LIG3-210ENST00000588109 MTFR1LQ9H019 292 aa6.56□□□□□ -1.36
LIG3-210ENST00000588109 BCL11AQ9H165 835 aa6.56□□□□□ -1.36
LIG3-210ENST00000588109 CASZ1Q86V15 1759 aa6.56□□□□□ -1.36
LIG3-210ENST00000588109 MYH3P11055 1940 aa6.56□□□□□ -1.36
LIG3-210ENST00000588109 GPR37L1O60883 481 aa6.55□□□□□ -1.36
LIG3-210ENST00000588109 CSF1RP07333 972 aa6.55□□□□□ -1.36
LIG3-210ENST00000588109 ITGA6P23229 1130 aa6.55□□□□□ -1.36
LIG3-210ENST00000588109 G3BP1Q13283 466 aaKnown RBP eCLIP6.55□□□□□ -1.36
LIG3-210ENST00000588109 HSP90AB4PQ58FF6 505 aa6.55□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms