RNA–Protein interactions for RNA: ENST00000584897.5

SMCHD1-211, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 4,143 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-211ENST00000584897 KLK14Q9P0G3 267 aa2.86□□□□□ -1.95
SMCHD1-211ENST00000584897 ABCA6Q8N139 1617 aa2.85□□□□□ -1.95
SMCHD1-211ENST00000584897 IGSF3O75054 1194 aa2.85□□□□□ -1.95
SMCHD1-211ENST00000584897 LRRC14Q15048 493 aa2.85□□□□□ -1.95
SMCHD1-211ENST00000584897 C8orf34Q49A92 452 aa2.85□□□□□ -1.95
SMCHD1-211ENST00000584897 PRSS36Q5K4E3 855 aa2.85□□□□□ -1.95
SMCHD1-211ENST00000584897 VSIG10LQ86VR7 867 aa2.85□□□□□ -1.95
SMCHD1-211ENST00000584897 ZNF295-AS1Q8N0V1 137 aa2.85□□□□□ -1.95
SMCHD1-211ENST00000584897 PICK1Q9NRD5 415 aa2.85□□□□□ -1.95
SMCHD1-211ENST00000584897 STRN4Q9NRL3 753 aa2.85□□□□□ -1.95
SMCHD1-211ENST00000584897 HELQQ8TDG4 1101 aa2.85□□□□□ -1.95
SMCHD1-211ENST00000584897 TMC1Q8TDI8 760 aa2.85□□□□□ -1.95
SMCHD1-211ENST00000584897 BSNDQ8WZ55 320 aa2.85□□□□□ -1.95
SMCHD1-211ENST00000584897 FAM83CQ9BQN1 747 aa2.85□□□□□ -1.95
SMCHD1-211ENST00000584897 CORO1BQ9BR76 489 aa2.85□□□□□ -1.95
SMCHD1-211ENST00000584897 KIAA1522Q9P206 1035 aaPredicted RBP2.85□□□□□ -1.95
SMCHD1-211ENST00000584897 STARD13Q9Y3M8 1113 aa2.85□□□□□ -1.95
SMCHD1-211ENST00000584897 ARHGAP23Q9P227 1491 aa2.85□□□□□ -1.95
SMCHD1-211ENST00000584897 CHRNA4P43681 627 aa2.85□□□□□ -1.95
SMCHD1-211ENST00000584897 GSK3AP49840 483 aa2.85□□□□□ -1.95
SMCHD1-211ENST00000584897 FKBP4Q02790 459 aaKnown RBP eCLIP2.85□□□□□ -1.95
SMCHD1-211ENST00000584897 KCNA1Q09470 495 aa2.85□□□□□ -1.95
SMCHD1-211ENST00000584897 ZSCAN29Q8IWY8 852 aaPredicted RBP2.85□□□□□ -1.95
SMCHD1-211ENST00000584897 GPR152Q8TDT2 470 aa2.85□□□□□ -1.95
SMCHD1-211ENST00000584897 DNAJC25Q9H1X3 360 aa2.85□□□□□ -1.95
SMCHD1-211ENST00000584897 ATXN3LQ9H3M9 355 aa2.85□□□□□ -1.95
SMCHD1-211ENST00000584897 SSU72Q9NP77 194 aaKnown RBP2.85□□□□□ -1.95
SMCHD1-211ENST00000584897 TNKS1BP1Q9C0C2 1729 aaKnown RBP2.85□□□□□ -1.95
SMCHD1-211ENST00000584897 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP2.85□□□□□ -1.95
SMCHD1-211ENST00000584897 PLXNC1O60486 1568 aa2.84□□□□□ -1.95
SMCHD1-211ENST00000584897 LAMC1P11047 1609 aa2.84□□□□□ -1.95
SMCHD1-211ENST00000584897 KDM5AP29375 1690 aaKnown RBP2.84□□□□□ -1.95
SMCHD1-211ENST00000584897 DLL1O00548 723 aa2.84□□□□□ -1.95
SMCHD1-211ENST00000584897 FSCN2O14926 492 aa2.84□□□□□ -1.95
SMCHD1-211ENST00000584897 NKAPLQ5M9Q1 402 aa2.84□□□□□ -1.95
SMCHD1-211ENST00000584897 EXOSC6Q5RKV6 272 aaKnown RBP2.84□□□□□ -1.95
SMCHD1-211ENST00000584897 TMEM102Q8N9M5 508 aaPredicted RBP2.84□□□□□ -1.95
SMCHD1-211ENST00000584897 LPIN3Q9BQK8 851 aa2.84□□□□□ -1.95
SMCHD1-211ENST00000584897 SYNGAP1Q96PV0 1343 aa2.84□□□□□ -1.95
SMCHD1-211ENST00000584897 ATP7AQ04656 1500 aa2.84□□□□□ -1.95
SMCHD1-211ENST00000584897 MMP20O60882 483 aa2.84□□□□□ -1.95
SMCHD1-211ENST00000584897 SCARA3Q6AZY7 606 aa2.84□□□□□ -1.95
SMCHD1-211ENST00000584897 C12orf50Q8NA57 414 aaPredicted RBP2.84□□□□□ -1.95
SMCHD1-211ENST00000584897 CEP44Q9C0F1 390 aa2.84□□□□□ -1.95
SMCHD1-211ENST00000584897 NLRP2Q9NX02 1062 aa2.84□□□□□ -1.95
SMCHD1-211ENST00000584897 ZNF335Q9H4Z2 1342 aaPredicted RBP2.84□□□□□ -1.95
SMCHD1-211ENST00000584897 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP2.84□□□□□ -1.96
SMCHD1-211ENST00000584897 BRD1O95696 1058 aa2.84□□□□□ -1.96
SMCHD1-211ENST00000584897 MLLT1Q03111 559 aaPredicted RBP2.84□□□□□ -1.96
SMCHD1-211ENST00000584897 NFKBIBQ15653 356 aa2.84□□□□□ -1.96
SMCHD1-211ENST00000584897 PRIMPOLQ96LW4 560 aa2.84□□□□□ -1.96
SMCHD1-211ENST00000584897 BIN2Q9UBW5 565 aaPredicted RBP2.84□□□□□ -1.96
SMCHD1-211ENST00000584897 MLH3Q9UHC1 1453 aa2.84□□□□□ -1.96
SMCHD1-211ENST00000584897 KLF15Q9UIH9 416 aa2.84□□□□□ -1.96
SMCHD1-211ENST00000584897 PRMT3O60678 531 aa2.83□□□□□ -1.96
SMCHD1-211ENST00000584897 GRIK4Q16099 956 aa2.83□□□□□ -1.96
SMCHD1-211ENST00000584897 SMG8Q8ND04 991 aaKnown RBP2.83□□□□□ -1.96
SMCHD1-211ENST00000584897 ZNF280CQ8ND82 737 aa2.83□□□□□ -1.96
SMCHD1-211ENST00000584897 DMRTB1Q96MA1 342 aa2.83□□□□□ -1.96
SMCHD1-211ENST00000584897 PIM2Q9P1W9 311 aa2.83□□□□□ -1.96
SMCHD1-211ENST00000584897 CROCC2H7BZ55 1655 aa2.83□□□□□ -1.96
SMCHD1-211ENST00000584897 MAP3K1Q13233 1512 aa2.83□□□□□ -1.96
SMCHD1-211ENST00000584897 PRXQ9BXM0 1461 aa2.83□□□□□ -1.96
SMCHD1-211ENST00000584897 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP2.83□□□□□ -1.96
SMCHD1-211ENST00000584897 RBM47A0AV96 593 aaKnown RBP2.83□□□□□ -1.96
SMCHD1-211ENST00000584897 HYAL3O43820 417 aaPredicted RBP2.83□□□□□ -1.96
SMCHD1-211ENST00000584897 KIF4AO95239 1232 aa2.83□□□□□ -1.96
SMCHD1-211ENST00000584897 TARSP26639 723 aaKnown RBP2.83□□□□□ -1.96
SMCHD1-211ENST00000584897 DNM1Q05193 864 aaKnown RBP2.83□□□□□ -1.96
SMCHD1-211ENST00000584897 PTPN12Q05209 780 aaKnown RBP2.83□□□□□ -1.96
SMCHD1-211ENST00000584897 CDC37L1Q7L3B6 337 aa2.83□□□□□ -1.96
SMCHD1-211ENST00000584897 GLYCTKQ8IVS8 523 aa2.83□□□□□ -1.96
SMCHD1-211ENST00000584897 EDEM1Q92611 657 aa2.83□□□□□ -1.96
SMCHD1-211ENST00000584897 PPP1R16BQ96T49 567 aa2.83□□□□□ -1.96
SMCHD1-211ENST00000584897 CAMSAP2Q08AD1 1489 aa2.83□□□□□ -1.96
SMCHD1-211ENST00000584897 CCDC18Q5T9S5 1454 aa2.83□□□□□ -1.96
SMCHD1-211ENST00000584897 MYO5CQ9NQX4 1742 aa2.83□□□□□ -1.96
SMCHD1-211ENST00000584897 FAM95CA0A1B0GW59 222 aa2.83□□□□□ -1.96
SMCHD1-211ENST00000584897 RAPGEF3O95398 923 aa2.83□□□□□ -1.96
SMCHD1-211ENST00000584897 CYP7A1P22680 504 aa2.83□□□□□ -1.96
SMCHD1-211ENST00000584897 BSDC1Q9NW68 430 aaPredicted RBP2.83□□□□□ -1.96
SMCHD1-211ENST00000584897 GTF2IRD1Q9UHL9 959 aa2.83□□□□□ -1.96
SMCHD1-211ENST00000584897 HCN2Q9UL51 889 aa2.83□□□□□ -1.96
SMCHD1-211ENST00000584897 ITSN2Q9NZM3 1697 aa2.83□□□□□ -1.96
SMCHD1-211ENST00000584897 GADD45BO75293 160 aaPredicted RBP2.83□□□□□ -1.96
SMCHD1-211ENST00000584897 SSFA2P28290 1259 aa2.83□□□□□ -1.96
SMCHD1-211ENST00000584897 NOS3P29474 1203 aa2.83□□□□□ -1.96
SMCHD1-211ENST00000584897 ZC3HAV1Q7Z2W4 902 aaKnown RBP2.83□□□□□ -1.96
SMCHD1-211ENST00000584897 USP26Q9BXU7 913 aa2.83□□□□□ -1.96
SMCHD1-211ENST00000584897 IVNS1ABPQ9Y6Y0 642 aa2.83□□□□□ -1.96
SMCHD1-211ENST00000584897 RGS12O14924 1447 aa2.82□□□□□ -1.96
SMCHD1-211ENST00000584897 FMN1Q68DA7 1419 aa2.82□□□□□ -1.96
SMCHD1-211ENST00000584897 CARMIL1Q5VZK9 1371 aa2.82□□□□□ -1.96
SMCHD1-211ENST00000584897 LRP6O75581 1613 aa2.82□□□□□ -1.96
SMCHD1-211ENST00000584897 SAMD9Q5K651 1589 aa2.82□□□□□ -1.96
SMCHD1-211ENST00000584897 NPR3P17342 541 aa2.82□□□□□ -1.96
SMCHD1-211ENST00000584897 CDK11BP21127 795 aaKnown RBP2.82□□□□□ -1.96
SMCHD1-211ENST00000584897 POU4F3Q15319 338 aa2.82□□□□□ -1.96
SMCHD1-211ENST00000584897 ZNF772Q68DY9 489 aaPredicted RBP2.82□□□□□ -1.96
SMCHD1-211ENST00000584897 C1orf229Q6ZS94 237 aaPredicted RBP2.82□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms