RNA–Protein interactions for RNA: ENST00000583595.1

SS18-223, Transcript of SS18, nBAF chromatin remodeling complex subunit, human

TSL 3

Gene SS18, Length 375 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SS18-223	ENST00000583595	MARCH6	O60337	910 aa		6.98	□□□□□ -1.29
SS18-223	ENST00000583595	POLR3D	P05423	398 aa	Predicted RBP	6.98	□□□□□ -1.29
SS18-223	ENST00000583595	GJA8	P48165	433 aa		6.98	□□□□□ -1.29
SS18-223	ENST00000583595	PIP4K2B	P78356	416 aa		6.98	□□□□□ -1.29
SS18-223	ENST00000583595	DUOXA2	Q1HG44	320 aa		6.98	□□□□□ -1.29
SS18-223	ENST00000583595	XP32	Q5T750	250 aa		6.98	□□□□□ -1.29
SS18-223	ENST00000583595		Q6ZS46	218 aa		6.98	□□□□□ -1.29
SS18-223	ENST00000583595	LATS2	Q9NRM7	1088 aa		6.98	□□□□□ -1.29
SS18-223	ENST00000583595	SOX13	Q9UN79	622 aa		6.98	□□□□□ -1.29
SS18-223	ENST00000583595	EIF5B	O60841	1220 aa	Known RBP	6.97	□□□□□ -1.29
SS18-223	ENST00000583595	ADAM11	O75078	769 aa		6.97	□□□□□ -1.29
SS18-223	ENST00000583595	RAB11FIP3	O75154	756 aa		6.97	□□□□□ -1.29
SS18-223	ENST00000583595	PEAR1	Q5VY43	1037 aa	Predicted RBP	6.97	□□□□□ -1.29
SS18-223	ENST00000583595	PRR23C	Q6ZRP0	262 aa		6.97	□□□□□ -1.29
SS18-223	ENST00000583595	KIAA1211	Q6ZU35	1233 aa		6.97	□□□□□ -1.29
SS18-223	ENST00000583595	SLC7A3	Q8WY07	619 aa		6.97	□□□□□ -1.29
SS18-223	ENST00000583595	BSND	Q8WZ55	320 aa		6.97	□□□□□ -1.29
SS18-223	ENST00000583595	WNT8B	Q93098	351 aa		6.97	□□□□□ -1.29
SS18-223	ENST00000583595	OSGEP	Q9NPF4	335 aa		6.97	□□□□□ -1.29
SS18-223	ENST00000583595	PTPRO	Q16827	1216 aa		6.96	□□□□□ -1.3
SS18-223	ENST00000583595	HGSNAT	Q68CP4	663 aa		6.96	□□□□□ -1.3
SS18-223	ENST00000583595	NXPE4	Q6UWF7	544 aa		6.96	□□□□□ -1.3
SS18-223	ENST00000583595	ASAP3	Q8TDY4	903 aa		6.96	□□□□□ -1.3
SS18-223	ENST00000583595	UBASH3B	Q8TF42	649 aa		6.96	□□□□□ -1.3
SS18-223	ENST00000583595	GPRASP2	Q96D09	838 aa		6.96	□□□□□ -1.3
SS18-223	ENST00000583595	UBL7	Q96S82	380 aa	Predicted RBP	6.96	□□□□□ -1.3
SS18-223	ENST00000583595	GIPC1	O14908	333 aa		6.95	□□□□□ -1.3
SS18-223	ENST00000583595	USP17L7	P0C7H9	530 aa		6.95	□□□□□ -1.3
SS18-223	ENST00000583595	ARL4D	P49703	201 aa		6.95	□□□□□ -1.3
SS18-223	ENST00000583595	NLRP12	P59046	1061 aa		6.95	□□□□□ -1.3
SS18-223	ENST00000583595	ERMP1	Q7Z2K6	904 aa		6.95	□□□□□ -1.3
SS18-223	ENST00000583595	VN1R5	Q7Z5H4	357 aa		6.95	□□□□□ -1.3
SS18-223	ENST00000583595	MRFAP1L1	Q96HT8	127 aa		6.95	□□□□□ -1.3
SS18-223	ENST00000583595	BHLHE41	Q9C0J9	482 aa	Predicted RBP	6.95	□□□□□ -1.3
SS18-223	ENST00000583595	SCO2	A0A1W2PP80	73 aa		6.94	□□□□□ -1.3
SS18-223	ENST00000583595		F6X3S4	739 aa		6.94	□□□□□ -1.3
SS18-223	ENST00000583595	SOX1	O00570	391 aa	Predicted RBP	6.94	□□□□□ -1.3
SS18-223	ENST00000583595	IGBP1	P78318	339 aa		6.94	□□□□□ -1.3
SS18-223	ENST00000583595	C19orf57	Q0VDD7	668 aa		6.94	□□□□□ -1.3
SS18-223	ENST00000583595	IKBKE	Q14164	716 aa		6.94	□□□□□ -1.3
SS18-223	ENST00000583595	CEP41	Q9BYV8	373 aa		6.94	□□□□□ -1.3
SS18-223	ENST00000583595	KBTBD4	Q9NVX7	518 aa		6.94	□□□□□ -1.3
SS18-223	ENST00000583595	FAM8A1	Q9UBU6	413 aa		6.94	□□□□□ -1.3
SS18-223	ENST00000583595		A0A1W2PP55	124 aa		6.93	□□□□□ -1.3
SS18-223	ENST00000583595	METTL12	A8MUP2	240 aa		6.93	□□□□□ -1.3
SS18-223	ENST00000583595	KRTAP9-1	A8MXZ3	250 aa	Predicted RBP	6.93	□□□□□ -1.3
SS18-223	ENST00000583595	HSD3B2	P26439	372 aa		6.93	□□□□□ -1.3
SS18-223	ENST00000583595	ETFB	P38117	255 aa		6.93	□□□□□ -1.3
SS18-223	ENST00000583595	ST13	P50502	369 aa	Known RBP	6.93	□□□□□ -1.3
SS18-223	ENST00000583595	GALNT12	Q8IXK2	581 aa		6.93	□□□□□ -1.3
SS18-223	ENST00000583595	CKAP2L	Q8IYA6	745 aa		6.93	□□□□□ -1.3
SS18-223	ENST00000583595	BCO2	Q9BYV7	579 aa		6.93	□□□□□ -1.3
SS18-223	ENST00000583595	MRVI1	Q9Y6F6	885 aa		6.93	□□□□□ -1.3
SS18-223	ENST00000583595	MINDY4B	A8MYZ0	360 aa		6.92	□□□□□ -1.3
SS18-223	ENST00000583595	SSB	P05455	408 aa	Known RBP eCLIP	6.92	□□□□□ -1.3
SS18-223	ENST00000583595	NFE2L2	Q16236	605 aa		6.92	□□□□□ -1.3
SS18-223	ENST00000583595	NOL8	Q76FK4	1167 aa	Known RBP	6.92	□□□□□ -1.3
SS18-223	ENST00000583595	RASGRP4	Q8TDF6	673 aa		6.92	□□□□□ -1.3
SS18-223	ENST00000583595	MICAL1	Q8TDZ2	1067 aa		6.92	□□□□□ -1.3
SS18-223	ENST00000583595	SPON2	Q9BUD6	331 aa		6.92	□□□□□ -1.3
SS18-223	ENST00000583595	ZNF408	Q9H9D4	720 aa		6.92	□□□□□ -1.3
SS18-223	ENST00000583595	NPHS2	Q9NP85	383 aa		6.92	□□□□□ -1.3
SS18-223	ENST00000583595	hCG_2014768	A0A024R1R8	64 aa		6.91	□□□□□ -1.3
SS18-223	ENST00000583595	DHX15	O43143	795 aa	Known RBP	6.91	□□□□□ -1.3
SS18-223	ENST00000583595	GADD45B	O75293	160 aa	Predicted RBP	6.91	□□□□□ -1.3
SS18-223	ENST00000583595	CLSTN1	O94985	981 aa		6.91	□□□□□ -1.3
SS18-223	ENST00000583595	FST	P19883	344 aa		6.91	□□□□□ -1.3
SS18-223	ENST00000583595	NASP	P49321	788 aa	Predicted RBP	6.91	□□□□□ -1.3
SS18-223	ENST00000583595	SERINC3	Q13530	473 aa		6.91	□□□□□ -1.3
SS18-223	ENST00000583595	ARMC10	Q8N2F6	343 aa		6.91	□□□□□ -1.3
SS18-223	ENST00000583595	KCNB2	Q92953	911 aa		6.91	□□□□□ -1.3
SS18-223	ENST00000583595	UTP4	Q969X6	686 aa	Known RBP	6.91	□□□□□ -1.3
SS18-223	ENST00000583595	FAM46A	Q96IP4	442 aa	Known RBP	6.91	□□□□□ -1.3
SS18-223	ENST00000583595	SEC16B	Q96JE7	1060 aa		6.91	□□□□□ -1.3
SS18-223	ENST00000583595	RUSC1	Q9BVN2	902 aa		6.91	□□□□□ -1.3
SS18-223	ENST00000583595	KRTAP9-2	Q9BYQ4	174 aa		6.91	□□□□□ -1.3
SS18-223	ENST00000583595	STOML1	Q9UBI4	398 aa		6.91	□□□□□ -1.3
SS18-223	ENST00000583595	ADAMTS1	Q9UHI8	967 aa		6.91	□□□□□ -1.3
SS18-223	ENST00000583595	RAX	Q9Y2V3	346 aa		6.91	□□□□□ -1.3
SS18-223	ENST00000583595	SART1	O43290	800 aa	Known RBP	6.9	□□□□□ -1.3
SS18-223	ENST00000583595	ESRRA	P11474	423 aa	Predicted RBP	6.9	□□□□□ -1.3
SS18-223	ENST00000583595	XRCC5	P13010	732 aa	Known RBP	6.9	□□□□□ -1.3
SS18-223	ENST00000583595	UVSSA	Q2YD98	709 aa		6.9	□□□□□ -1.3
SS18-223	ENST00000583595	ARTN	Q5T4W7	220 aa		6.9	□□□□□ -1.3
SS18-223	ENST00000583595	ANKRD34A	Q69YU3	496 aa		6.9	□□□□□ -1.3
SS18-223	ENST00000583595	ANKS3	Q6ZW76	656 aa		6.9	□□□□□ -1.3
SS18-223	ENST00000583595	CCNJL	Q8IV13	435 aa		6.9	□□□□□ -1.3
SS18-223	ENST00000583595	TCF12	Q99081	682 aa		6.9	□□□□□ -1.3
SS18-223	ENST00000583595	TRIM56	Q9BRZ2	755 aa	Known RBP	6.9	□□□□□ -1.3
SS18-223	ENST00000583595	USP26	Q9BXU7	913 aa		6.9	□□□□□ -1.3
SS18-223	ENST00000583595	RNF208	Q9H0X6	261 aa		6.9	□□□□□ -1.3
SS18-223	ENST00000583595	SOX17	Q9H6I2	414 aa	Predicted RBP	6.9	□□□□□ -1.3
SS18-223	ENST00000583595	LIN7B	Q9HAP6	207 aa		6.9	□□□□□ -1.3
SS18-223	ENST00000583595	EFR3B	Q9Y2G0	817 aa		6.9	□□□□□ -1.3
SS18-223	ENST00000583595	ARID4B	Q4LE39	1312 aa	Predicted RBP	6.9	□□□□□ -1.3
SS18-223	ENST00000583595		A0A096LPE4	126 aa		6.89	□□□□□ -1.31
SS18-223	ENST00000583595		A0A1W2PPZ6	126 aa		6.89	□□□□□ -1.31
SS18-223	ENST00000583595	IBSP	P21815	317 aa	Predicted RBP	6.89	□□□□□ -1.31
SS18-223	ENST00000583595	GRIA4	P48058	902 aa		6.89	□□□□□ -1.31
SS18-223	ENST00000583595	SPRED3	Q2MJR0	410 aa		6.89	□□□□□ -1.31

Retrieved 100 of 20,778 RNA–protein pairs in 27 ms