RNA–Protein interactions for RNA: ENST00000582352.1

SHMT1-208, Transcript of serine hydroxymethyltransferase 1, humanhuman

Gene SHMT1, Length 2,756 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-208ENST00000582352 SHC4Q6S5L8 630 aa14.07□□□□□ -0.16
SHMT1-208ENST00000582352 VSTM4Q8IW00 320 aa14.07□□□□□ -0.16
SHMT1-208ENST00000582352 DPF2Q92785 391 aa14.07□□□□□ -0.16
SHMT1-208ENST00000582352 AIFM3Q96NN9 605 aa14.07□□□□□ -0.16
SHMT1-208ENST00000582352 UTP14AQ9BVJ6 771 aaKnown RBP14.07□□□□□ -0.16
SHMT1-208ENST00000582352 ABCC12Q96J65 1359 aa14.07□□□□□ -0.16
SHMT1-208ENST00000582352 URI1O94763 535 aaPredicted RBP14.06□□□□□ -0.16
SHMT1-208ENST00000582352 TRIM29Q14134 588 aa14.06□□□□□ -0.16
SHMT1-208ENST00000582352 SCARF1Q14162 830 aa14.06□□□□□ -0.16
SHMT1-208ENST00000582352 KRT40Q6A162 431 aa14.06□□□□□ -0.16
SHMT1-208ENST00000582352 TMCO3Q6UWJ1 677 aa14.06□□□□□ -0.16
SHMT1-208ENST00000582352 FCHSD1Q86WN1 690 aa14.06□□□□□ -0.16
SHMT1-208ENST00000582352 NOL10Q9BSC4 688 aaKnown RBP14.06□□□□□ -0.16
SHMT1-208ENST00000582352 DDX24Q9GZR7 859 aaKnown RBP eCLIP14.06□□□□□ -0.16
SHMT1-208ENST00000582352 FHOD1Q9Y613 1164 aa14.06□□□□□ -0.16
SHMT1-208ENST00000582352 PNMA6AP0CW24 399 aaPredicted RBP14.06□□□□□ -0.16
SHMT1-208ENST00000582352 A1BGP04217 495 aa14.05□□□□□ -0.16
SHMT1-208ENST00000582352 RESP18Q5W5W9 173 aa14.05□□□□□ -0.16
SHMT1-208ENST00000582352 FBXO3Q9UK99 471 aa14.05□□□□□ -0.16
SHMT1-208ENST00000582352 COL18A1P39060 1754 aa14.05□□□□□ -0.16
SHMT1-208ENST00000582352 ARHGAP6O43182 974 aa14.05□□□□□ -0.16
SHMT1-208ENST00000582352 CHRNA2Q15822 529 aa14.05□□□□□ -0.16
SHMT1-208ENST00000582352 TRIM65Q6PJ69 517 aa14.05□□□□□ -0.16
SHMT1-208ENST00000582352 PI16Q6UXB8 463 aa14.05□□□□□ -0.16
SHMT1-208ENST00000582352 MICU3Q86XE3 530 aa14.05□□□□□ -0.16
SHMT1-208ENST00000582352 CNNM3Q8NE01 707 aa14.05□□□□□ -0.16
SHMT1-208ENST00000582352 TMX1Q9H3N1 280 aa14.05□□□□□ -0.16
SHMT1-208ENST00000582352 ERICH4A6NGS2 130 aa14.05□□□□□ -0.16
SHMT1-208ENST00000582352 RXRAP19793 462 aa14.05□□□□□ -0.16
SHMT1-208ENST00000582352 PTPAQ15257 358 aa14.05□□□□□ -0.16
SHMT1-208ENST00000582352 CCDC102BQ68D86 513 aa14.05□□□□□ -0.16
SHMT1-208ENST00000582352 PHKBQ93100 1093 aa14.05□□□□□ -0.16
SHMT1-208ENST00000582352 ADAMTSL3P82987 1691 aa14.04□□□□□ -0.16
SHMT1-208ENST00000582352 EFCAB8A8MWE9 144 aa14.04□□□□□ -0.16
SHMT1-208ENST00000582352 CUTAO60888 179 aa14.04□□□□□ -0.16
SHMT1-208ENST00000582352 TADA3O75528 432 aa14.04□□□□□ -0.16
SHMT1-208ENST00000582352 TPM1P09493 284 aa14.04□□□□□ -0.16
SHMT1-208ENST00000582352 APOA5Q6Q788 366 aa14.04□□□□□ -0.16
SHMT1-208ENST00000582352 METTL16Q86W50 562 aaKnown RBP14.04□□□□□ -0.16
SHMT1-208ENST00000582352 PROSER2Q86WR7 435 aaPredicted RBP14.04□□□□□ -0.16
SHMT1-208ENST00000582352 CLIC6Q96NY7 704 aa14.04□□□□□ -0.16
SHMT1-208ENST00000582352 CCDC85AQ96PX6 553 aaPredicted RBP14.04□□□□□ -0.16
SHMT1-208ENST00000582352 FANCLQ9NW38 375 aa14.04□□□□□ -0.16
SHMT1-208ENST00000582352 HOOK1Q9UJC3 728 aaKnown RBP14.04□□□□□ -0.16
SHMT1-208ENST00000582352 ECM29Q5VYK3 1845 aa14.04□□□□□ -0.16
SHMT1-208ENST00000582352 FAM237AA0A1B0GTK4 181 aa14.04□□□□□ -0.16
SHMT1-208ENST00000582352 TMEM232C9JQI7 657 aa14.04□□□□□ -0.16
SHMT1-208ENST00000582352 SH2B2O14492 632 aaPredicted RBP14.04□□□□□ -0.16
SHMT1-208ENST00000582352 GOLGA8FQ08AF8 430 aa14.04□□□□□ -0.16
SHMT1-208ENST00000582352 GOLGA8DPQ0D2H9 430 aa14.04□□□□□ -0.16
SHMT1-208ENST00000582352 NFXL1Q6ZNB6 911 aa14.04□□□□□ -0.16
SHMT1-208ENST00000582352 KRBA2Q6ZNG9 492 aa14.04□□□□□ -0.16
SHMT1-208ENST00000582352 REXO1L1PQ8IX06 675 aa14.04□□□□□ -0.16
SHMT1-208ENST00000582352 MAP3K14Q99558 947 aa14.04□□□□□ -0.16
SHMT1-208ENST00000582352 KCNH3Q9ULD8 1083 aa14.04□□□□□ -0.16
SHMT1-208ENST00000582352 PARP3Q9Y6F1 533 aa14.04□□□□□ -0.16
SHMT1-208ENST00000582352 UBR2Q8IWV8 1755 aa14.03□□□□□ -0.16
SHMT1-208ENST00000582352 GOLGA6L9A6NEM1 432 aa14.03□□□□□ -0.16
SHMT1-208ENST00000582352 APPP05067 770 aa14.03□□□□□ -0.16
SHMT1-208ENST00000582352 TBC1D10CQ8IV04 446 aa14.03□□□□□ -0.16
SHMT1-208ENST00000582352 FAM177A1Q8N128 213 aaPredicted RBP14.03□□□□□ -0.16
SHMT1-208ENST00000582352 CARD6Q9BX69 1037 aa14.03□□□□□ -0.16
SHMT1-208ENST00000582352 NBPF3Q9H094 633 aa14.03□□□□□ -0.16
SHMT1-208ENST00000582352 C19orf44Q9H6X5 657 aa14.03□□□□□ -0.16
SHMT1-208ENST00000582352 PPP2R2CQ9Y2T4 447 aa14.03□□□□□ -0.16
SHMT1-208ENST00000582352 ZBTB43O43298 467 aa14.03□□□□□ -0.16
SHMT1-208ENST00000582352 IARSP41252 1262 aaKnown RBP14.03□□□□□ -0.16
SHMT1-208ENST00000582352 LONRF3Q496Y0 759 aa14.03□□□□□ -0.16
SHMT1-208ENST00000582352 PCDHA5Q9Y5H7 936 aa14.03□□□□□ -0.16
SHMT1-208ENST00000582352 IFIT5Q13325 482 aaKnown RBP14.02□□□□□ -0.16
SHMT1-208ENST00000582352 PTPN21Q16825 1174 aa14.02□□□□□ -0.16
SHMT1-208ENST00000582352 CYB5R4Q7L1T6 521 aa14.02□□□□□ -0.16
SHMT1-208ENST00000582352 CABLES1Q8TDN4 633 aa14.02□□□□□ -0.16
SHMT1-208ENST00000582352 MPHOSPH8Q99549 860 aa14.02□□□□□ -0.16
SHMT1-208ENST00000582352 BAG1Q99933 345 aaPredicted RBP14.02□□□□□ -0.16
SHMT1-208ENST00000582352 EIF4ENIF1Q9NRA8 985 aaKnown RBP14.02□□□□□ -0.16
SHMT1-208ENST00000582352 DENND2AQ9ULE3 1009 aa14.02□□□□□ -0.16
SHMT1-208ENST00000582352 PCDH11XQ9BZA7 1347 aa14.02□□□□□ -0.17
SHMT1-208ENST00000582352 PCDH11YQ9BZA8 1340 aa14.02□□□□□ -0.17
SHMT1-208ENST00000582352 VWA3AA6NCI4 1184 aa14.02□□□□□ -0.17
SHMT1-208ENST00000582352 GOLGA8AA7E2F4 631 aa14.02□□□□□ -0.17
SHMT1-208ENST00000582352 ZRANB2O95218 330 aaKnown RBP eCLIP14.02□□□□□ -0.17
SHMT1-208ENST00000582352 CDC27P30260 824 aa14.02□□□□□ -0.17
SHMT1-208ENST00000582352 SLC9C2Q5TAH2 1124 aa14.02□□□□□ -0.17
SHMT1-208ENST00000582352 PDILTQ8N807 584 aa14.02□□□□□ -0.17
SHMT1-208ENST00000582352 KRI1Q8N9T8 703 aaKnown RBP14.02□□□□□ -0.17
SHMT1-208ENST00000582352 ZNF330Q9Y3S2 320 aaPredicted RBP14.02□□□□□ -0.17
SHMT1-208ENST00000582352 ATRNO75882 1429 aa14.01□□□□□ -0.17
SHMT1-208ENST00000582352 B4E1Z4 1266 aa14.01□□□□□ -0.17
SHMT1-208ENST00000582352 FANCGO15287 622 aa14.01□□□□□ -0.17
SHMT1-208ENST00000582352 CASQ1P31415 396 aa14.01□□□□□ -0.17
SHMT1-208ENST00000582352 HSP90AA4PQ58FG1 418 aa14.01□□□□□ -0.17
SHMT1-208ENST00000582352 METTL24Q5JXM2 366 aa14.01□□□□□ -0.17
SHMT1-208ENST00000582352 TMEM87BQ96K49 555 aa14.01□□□□□ -0.17
SHMT1-208ENST00000582352 KCPQ6ZWJ8 1503 aa14.01□□□□□ -0.17
SHMT1-208ENST00000582352 ADD2P35612 726 aa14.01□□□□□ -0.17
SHMT1-208ENST00000582352 MCAMP43121 646 aa14.01□□□□□ -0.17
SHMT1-208ENST00000582352 PLA2G4AP47712 749 aa14.01□□□□□ -0.17
SHMT1-208ENST00000582352 GNG11P61952 73 aa14.01□□□□□ -0.17
SHMT1-208ENST00000582352 TEX35Q5T0J7 233 aa14.01□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms