RNA–Protein interactions for RNA: ENST00000581226.1

SMCHD1-204, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 459 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-204ENST00000581226 LRRC14Q15048 493 aa7.7□□□□□ -1.18
SMCHD1-204ENST00000581226 ANKRD34AQ69YU3 496 aa7.7□□□□□ -1.18
SMCHD1-204ENST00000581226 LLGL2Q6P1M3 1020 aa7.7□□□□□ -1.18
SMCHD1-204ENST00000581226 Q6ZS46 218 aa7.7□□□□□ -1.18
SMCHD1-204ENST00000581226 C12orf50Q8NA57 414 aaPredicted RBP7.7□□□□□ -1.18
SMCHD1-204ENST00000581226 SMG8Q8ND04 991 aaKnown RBP7.7□□□□□ -1.18
SMCHD1-204ENST00000581226 GRIN3AQ8TCU5 1115 aa7.7□□□□□ -1.18
SMCHD1-204ENST00000581226 SART1O43290 800 aaKnown RBP7.69□□□□□ -1.18
SMCHD1-204ENST00000581226 RLBP1P12271 317 aa7.69□□□□□ -1.18
SMCHD1-204ENST00000581226 LIG1P18858 919 aa7.69□□□□□ -1.18
SMCHD1-204ENST00000581226 HNRNPUQ00839 825 aaKnown RBP eCLIP7.69□□□□□ -1.18
SMCHD1-204ENST00000581226 ZNF252P-AS1Q0IIN9 211 aa7.69□□□□□ -1.18
SMCHD1-204ENST00000581226 RASIP1Q5U651 963 aa7.69□□□□□ -1.18
SMCHD1-204ENST00000581226 DZIP1LQ8IYY4 767 aaKnown RBP7.69□□□□□ -1.18
SMCHD1-204ENST00000581226 WDR89Q96FK6 387 aaPredicted RBP7.69□□□□□ -1.18
SMCHD1-204ENST00000581226 MEGF10Q96KG7 1140 aa7.69□□□□□ -1.18
SMCHD1-204ENST00000581226 UBL7Q96S82 380 aaPredicted RBP7.69□□□□□ -1.18
SMCHD1-204ENST00000581226 SUGCTQ9HAC7 445 aa7.69□□□□□ -1.18
SMCHD1-204ENST00000581226 KIAA1522Q9P206 1035 aaPredicted RBP7.69□□□□□ -1.18
SMCHD1-204ENST00000581226 CYP8B1Q9UNU6 501 aa7.69□□□□□ -1.18
SMCHD1-204ENST00000581226 ZNF862O60290 1169 aa7.68□□□□□ -1.18
SMCHD1-204ENST00000581226 AOC2O75106 756 aa7.68□□□□□ -1.18
SMCHD1-204ENST00000581226 PROCP04070 461 aa7.68□□□□□ -1.18
SMCHD1-204ENST00000581226 DRD2P14416 443 aa7.68□□□□□ -1.18
SMCHD1-204ENST00000581226 LMNB1P20700 586 aa7.68□□□□□ -1.18
SMCHD1-204ENST00000581226 LIG3P49916 1009 aa7.68□□□□□ -1.18
SMCHD1-204ENST00000581226 AKAP4Q5JQC9 854 aa7.68□□□□□ -1.18
SMCHD1-204ENST00000581226 LDLRAD1Q5T700 205 aa7.68□□□□□ -1.18
SMCHD1-204ENST00000581226 MPRIPQ6WCQ1 1025 aa7.68□□□□□ -1.18
SMCHD1-204ENST00000581226 ACSBG1Q96GR2 724 aa7.68□□□□□ -1.18
SMCHD1-204ENST00000581226 KRT82Q9NSB4 513 aa7.68□□□□□ -1.18
SMCHD1-204ENST00000581226 F6X3S4 739 aa7.67□□□□□ -1.18
SMCHD1-204ENST00000581226 TRIM37O94972 964 aa7.67□□□□□ -1.18
SMCHD1-204ENST00000581226 RECKO95980 971 aa7.67□□□□□ -1.18
SMCHD1-204ENST00000581226 SLFN14P0C7P3 912 aa7.67□□□□□ -1.18
SMCHD1-204ENST00000581226 RPS26P62854 115 aaKnown RBP7.67□□□□□ -1.18
SMCHD1-204ENST00000581226 SOX4Q06945 474 aaPredicted RBP7.67□□□□□ -1.18
SMCHD1-204ENST00000581226 DOC2BQ14184 412 aa7.67□□□□□ -1.18
SMCHD1-204ENST00000581226 KRTAP1-3Q8IUG1 177 aa7.67□□□□□ -1.18
SMCHD1-204ENST00000581226 RELL1Q8IUW5 271 aa7.67□□□□□ -1.18
SMCHD1-204ENST00000581226 GPBAR1Q8TDU6 330 aa7.67□□□□□ -1.18
SMCHD1-204ENST00000581226 TP53INP1Q96A56 240 aa7.67□□□□□ -1.18
SMCHD1-204ENST00000581226 WDR18Q9BV38 432 aa7.67□□□□□ -1.18
SMCHD1-204ENST00000581226 SSBP4Q9BWG4 385 aaPredicted RBP7.67□□□□□ -1.18
SMCHD1-204ENST00000581226 TIAF1O95411 115 aa7.66□□□□□ -1.18
SMCHD1-204ENST00000581226 PREPP48147 710 aa7.66□□□□□ -1.18
SMCHD1-204ENST00000581226 AGMOQ6ZNB7 445 aa7.66□□□□□ -1.18
SMCHD1-204ENST00000581226 TPSG1Q9NRR2 321 aa7.66□□□□□ -1.18
SMCHD1-204ENST00000581226 GGT7Q9UJ14 662 aa7.66□□□□□ -1.18
SMCHD1-204ENST00000581226 TLR6Q9Y2C9 796 aa7.66□□□□□ -1.18
SMCHD1-204ENST00000581226 K7ELQ4 463 aaPredicted RBP7.65□□□□□ -1.18
SMCHD1-204ENST00000581226 GAS2O43903 313 aaKnown RBP7.65□□□□□ -1.18
SMCHD1-204ENST00000581226 ADH5P11766 374 aa7.65□□□□□ -1.18
SMCHD1-204ENST00000581226 ZNF76P36508 570 aa7.65□□□□□ -1.18
SMCHD1-204ENST00000581226 KIF4BQ2VIQ3 1234 aa7.65□□□□□ -1.18
SMCHD1-204ENST00000581226 SCARA3Q6AZY7 606 aa7.65□□□□□ -1.18
SMCHD1-204ENST00000581226 HS2ST1Q7LGA3 356 aa7.65□□□□□ -1.18
SMCHD1-204ENST00000581226 DYMQ7RTS9 669 aa7.65□□□□□ -1.18
SMCHD1-204ENST00000581226 UTP4Q969X6 686 aaKnown RBP7.65□□□□□ -1.18
SMCHD1-204ENST00000581226 FAM46AQ96IP4 442 aaKnown RBP7.65□□□□□ -1.18
SMCHD1-204ENST00000581226 RSRP1Q9BUV0 290 aa7.65□□□□□ -1.18
SMCHD1-204ENST00000581226 AP4E1Q9UPM8 1137 aa7.65□□□□□ -1.18
SMCHD1-204ENST00000581226 PCDHB5Q9Y5E4 795 aa7.65□□□□□ -1.18
SMCHD1-204ENST00000581226 SYNGAP1Q96PV0 1343 aa7.64□□□□□ -1.19
SMCHD1-204ENST00000581226 MINDY4BA8MYZ0 360 aa7.64□□□□□ -1.19
SMCHD1-204ENST00000581226 SCAMP3O14828 347 aaKnown RBP7.64□□□□□ -1.19
SMCHD1-204ENST00000581226 TFE3P19532 575 aaPredicted RBP7.64□□□□□ -1.19
SMCHD1-204ENST00000581226 GBP2P32456 591 aaPredicted RBP7.64□□□□□ -1.19
SMCHD1-204ENST00000581226 USP11P51784 963 aa7.64□□□□□ -1.19
SMCHD1-204ENST00000581226 PWP1Q13610 501 aa7.64□□□□□ -1.19
SMCHD1-204ENST00000581226 UVSSAQ2YD98 709 aa7.64□□□□□ -1.19
SMCHD1-204ENST00000581226 PHC3Q8NDX5 983 aa7.64□□□□□ -1.19
SMCHD1-204ENST00000581226 CACNA2D2Q9NY47 1150 aa7.64□□□□□ -1.19
SMCHD1-204ENST00000581226 PPP1R9AQ9ULJ8 1098 aa7.64□□□□□ -1.19
SMCHD1-204ENST00000581226 PCDHA4Q9UN74 947 aa7.64□□□□□ -1.19
SMCHD1-204ENST00000581226 FANCCQ00597 558 aa7.63□□□□□ -1.19
SMCHD1-204ENST00000581226 ID3Q02535 119 aa7.63□□□□□ -1.19
SMCHD1-204ENST00000581226 SEPT6Q14141 434 aa7.63□□□□□ -1.19
SMCHD1-204ENST00000581226 ERMP1Q7Z2K6 904 aa7.63□□□□□ -1.19
SMCHD1-204ENST00000581226 ARMC10Q8N2F6 343 aa7.63□□□□□ -1.19
SMCHD1-204ENST00000581226 C2CD4AQ8NCU7 369 aaPredicted RBP7.63□□□□□ -1.19
SMCHD1-204ENST00000581226 RNF34Q969K3 372 aa7.63□□□□□ -1.19
SMCHD1-204ENST00000581226 TMEM74Q96NL1 305 aa7.63□□□□□ -1.19
SMCHD1-204ENST00000581226 MIR1-1HGQ9H1L0 117 aa7.63□□□□□ -1.19
SMCHD1-204ENST00000581226 COPRSQ9NQ92 184 aa7.63□□□□□ -1.19
SMCHD1-204ENST00000581226 METTL5Q9NRN9 209 aaKnown RBP7.63□□□□□ -1.19
SMCHD1-204ENST00000581226 KBTBD4Q9NVX7 518 aa7.63□□□□□ -1.19
SMCHD1-204ENST00000581226 TMPRSS2O15393 492 aa7.62□□□□□ -1.19
SMCHD1-204ENST00000581226 BMP3P12645 472 aa7.62□□□□□ -1.19
SMCHD1-204ENST00000581226 PTPN11Q06124 597 aaPredicted RBP7.62□□□□□ -1.19
SMCHD1-204ENST00000581226 PPP1R3FQ6ZSY5 799 aaPredicted RBP7.62□□□□□ -1.19
SMCHD1-204ENST00000581226 JARID2Q92833 1246 aaPredicted RBP7.62□□□□□ -1.19
SMCHD1-204ENST00000581226 MYRFLQ96LU7 910 aa7.62□□□□□ -1.19
SMCHD1-204ENST00000581226 CRIM1Q9NZV1 1036 aa7.62□□□□□ -1.19
SMCHD1-204ENST00000581226 ACTL7BQ9Y614 415 aa7.62□□□□□ -1.19
SMCHD1-204ENST00000581226 E9PSI1 815 aa7.61□□□□□ -1.19
SMCHD1-204ENST00000581226 DHX15O43143 795 aaKnown RBP7.61□□□□□ -1.19
SMCHD1-204ENST00000581226 PF4P02776 101 aa7.61□□□□□ -1.19
SMCHD1-204ENST00000581226 ASPAP45381 313 aa7.61□□□□□ -1.19
SMCHD1-204ENST00000581226 CAMK2GQ13555 558 aaPredicted RBP7.61□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms