RNA–Protein interactions for RNA: ENST00000576862.5

NUP88-213, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 788 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-213ENST00000576862 LIG1P18858 919 aa9.17□□□□□ -0.94
NUP88-213ENST00000576862 SOX4Q06945 474 aaPredicted RBP9.17□□□□□ -0.94
NUP88-213ENST00000576862 UVSSAQ2YD98 709 aa9.17□□□□□ -0.94
NUP88-213ENST00000576862 HP1BP3Q5SSJ5 553 aaPredicted RBP9.17□□□□□ -0.94
NUP88-213ENST00000576862 LDLRAD1Q5T700 205 aa9.17□□□□□ -0.94
NUP88-213ENST00000576862 PCNX4Q63HM2 1172 aa9.17□□□□□ -0.94
NUP88-213ENST00000576862 C12orf50Q8NA57 414 aaPredicted RBP9.17□□□□□ -0.94
NUP88-213ENST00000576862 KCNB2Q92953 911 aa9.17□□□□□ -0.94
NUP88-213ENST00000576862 EMILIN2Q9BXX0 1053 aa9.17□□□□□ -0.94
NUP88-213ENST00000576862 KRT82Q9NSB4 513 aa9.17□□□□□ -0.94
NUP88-213ENST00000576862 MAP1SQ66K74 1059 aaPredicted RBP9.16□□□□□ -0.94
NUP88-213ENST00000576862 PPP1R3FQ6ZSY5 799 aaPredicted RBP9.16□□□□□ -0.94
NUP88-213ENST00000576862 PCDHGC5Q9Y5F6 944 aa9.16□□□□□ -0.94
NUP88-213ENST00000576862 SYNGAP1Q96PV0 1343 aa9.15□□□□□ -0.94
NUP88-213ENST00000576862 ADH5P11766 374 aa9.15□□□□□ -0.94
NUP88-213ENST00000576862 KIF4BQ2VIQ3 1234 aa9.15□□□□□ -0.94
NUP88-213ENST00000576862 AKAP4Q5JQC9 854 aa9.15□□□□□ -0.94
NUP88-213ENST00000576862 C2CD4AQ8NCU7 369 aaPredicted RBP9.15□□□□□ -0.94
NUP88-213ENST00000576862 MYRFLQ96LU7 910 aa9.15□□□□□ -0.94
NUP88-213ENST00000576862 CBX8Q9HC52 389 aa9.15□□□□□ -0.94
NUP88-213ENST00000576862 PPP1R9AQ9ULJ8 1098 aa9.15□□□□□ -0.94
NUP88-213ENST00000576862 SAMM50Q9Y512 469 aa9.15□□□□□ -0.94
NUP88-213ENST00000576862 SART1O43290 800 aaKnown RBP9.14□□□□□ -0.95
NUP88-213ENST00000576862 H2AFB1P0C5Y9 115 aa9.14□□□□□ -0.95
NUP88-213ENST00000576862 H2AFB2P0C5Z0 115 aa9.14□□□□□ -0.95
NUP88-213ENST00000576862 TTBK2Q6IQ55 1244 aa9.14□□□□□ -0.95
NUP88-213ENST00000576862 LLGL2Q6P1M3 1020 aa9.14□□□□□ -0.95
NUP88-213ENST00000576862 PRR23CQ6ZRP0 262 aa9.14□□□□□ -0.95
NUP88-213ENST00000576862 GPBAR1Q8TDU6 330 aa9.14□□□□□ -0.95
NUP88-213ENST00000576862 UTP4Q969X6 686 aaKnown RBP9.14□□□□□ -0.95
NUP88-213ENST00000576862 NOC4LQ9BVI4 516 aaKnown RBP9.14□□□□□ -0.95
NUP88-213ENST00000576862 RAD18Q9NS91 495 aa9.14□□□□□ -0.95
NUP88-213ENST00000576862 UNCXA6NJT0 531 aa9.13□□□□□ -0.95
NUP88-213ENST00000576862 DYRK3O43781 588 aa9.13□□□□□ -0.95
NUP88-213ENST00000576862 ITGAEP38570 1179 aa9.13□□□□□ -0.95
NUP88-213ENST00000576862 CYP8B1Q9UNU6 501 aa9.13□□□□□ -0.95
NUP88-213ENST00000576862 TMPRSS2O15393 492 aa9.12□□□□□ -0.95
NUP88-213ENST00000576862 TRIM37O94972 964 aa9.12□□□□□ -0.95
NUP88-213ENST00000576862 BMP3P12645 472 aa9.12□□□□□ -0.95
NUP88-213ENST00000576862 LIG3P49916 1009 aa9.12□□□□□ -0.95
NUP88-213ENST00000576862 MAP3K11Q16584 847 aa9.12□□□□□ -0.95
NUP88-213ENST00000576862 SGO2Q562F6 1265 aa9.12□□□□□ -0.95
NUP88-213ENST00000576862 FAM20CQ8IXL6 584 aa9.12□□□□□ -0.95
NUP88-213ENST00000576862 GSX1Q9H4S2 264 aaPredicted RBP9.12□□□□□ -0.95
NUP88-213ENST00000576862 ACTL7BQ9Y614 415 aa9.12□□□□□ -0.95
NUP88-213ENST00000576862 DHX15O43143 795 aaKnown RBP9.11□□□□□ -0.95
NUP88-213ENST00000576862 ITGB7P26010 798 aa9.11□□□□□ -0.95
NUP88-213ENST00000576862 RPS26P62854 115 aaKnown RBP9.11□□□□□ -0.95
NUP88-213ENST00000576862 PTPN11Q06124 597 aaPredicted RBP9.11□□□□□ -0.95
NUP88-213ENST00000576862 LRRC14Q15048 493 aa9.11□□□□□ -0.95
NUP88-213ENST00000576862 CDPF1Q6NVV7 123 aa9.11□□□□□ -0.95
NUP88-213ENST00000576862 AGMOQ6ZNB7 445 aa9.11□□□□□ -0.95
NUP88-213ENST00000576862 GAL3ST3Q96A11 431 aa9.11□□□□□ -0.95
NUP88-213ENST00000576862 BACH2Q9BYV9 841 aa9.11□□□□□ -0.95
NUP88-213ENST00000576862 CRIM1Q9NZV1 1036 aa9.11□□□□□ -0.95
NUP88-213ENST00000576862 AP4E1Q9UPM8 1137 aa9.11□□□□□ -0.95
NUP88-213ENST00000576862 HIF3AQ9Y2N7 669 aa9.11□□□□□ -0.95
NUP88-213ENST00000576862 GAS2O43903 313 aaKnown RBP9.1□□□□□ -0.95
NUP88-213ENST00000576862 ID3Q02535 119 aa9.1□□□□□ -0.95
NUP88-213ENST00000576862 SCARA3Q6AZY7 606 aa9.1□□□□□ -0.95
NUP88-213ENST00000576862 FAM105AQ9NUU6 356 aa9.1□□□□□ -0.95
NUP88-213ENST00000576862 TLR6Q9Y2C9 796 aa9.1□□□□□ -0.95
NUP88-213ENST00000576862 RAXQ9Y2V3 346 aa9.1□□□□□ -0.95
NUP88-213ENST00000576862 PCDHB5Q9Y5E4 795 aa9.1□□□□□ -0.95
NUP88-213ENST00000576862 F6X3S4 739 aa9.09□□□□□ -0.95
NUP88-213ENST00000576862 SLFN14P0C7P3 912 aa9.09□□□□□ -0.95
NUP88-213ENST00000576862 TFE3P19532 575 aaPredicted RBP9.09□□□□□ -0.95
NUP88-213ENST00000576862 VAMP1P23763 118 aa9.09□□□□□ -0.95
NUP88-213ENST00000576862 ZC3H12AQ5D1E8 599 aaKnown RBP9.09□□□□□ -0.95
NUP88-213ENST00000576862 DYMQ7RTS9 669 aa9.09□□□□□ -0.95
NUP88-213ENST00000576862 PHC3Q8NDX5 983 aa9.09□□□□□ -0.95
NUP88-213ENST00000576862 FANCD2OSQ96PS1 177 aa9.09□□□□□ -0.95
NUP88-213ENST00000576862 BCL11AQ9H165 835 aa9.09□□□□□ -0.95
NUP88-213ENST00000576862 SEMA6BQ9H3T3 888 aa9.09□□□□□ -0.95
NUP88-213ENST00000576862 KIAA1522Q9P206 1035 aaPredicted RBP9.09□□□□□ -0.95
NUP88-213ENST00000576862 RECKO95980 971 aa9.08□□□□□ -0.96
NUP88-213ENST00000576862 MAP4P27816 1152 aaKnown RBP9.08□□□□□ -0.96
NUP88-213ENST00000576862 FBLIM1Q8WUP2 373 aa9.08□□□□□ -0.96
NUP88-213ENST00000576862 MRRFQ96E11 262 aaKnown RBP9.08□□□□□ -0.96
NUP88-213ENST00000576862 ACSBG1Q96GR2 724 aa9.08□□□□□ -0.96
NUP88-213ENST00000576862 DISC1Q9NRI5 854 aa9.08□□□□□ -0.96
NUP88-213ENST00000576862 K7ELQ4 463 aaPredicted RBP9.07□□□□□ -0.96
NUP88-213ENST00000576862 ADAM23O75077 832 aa9.07□□□□□ -0.96
NUP88-213ENST00000576862 RLBP1P12271 317 aa9.07□□□□□ -0.96
NUP88-213ENST00000576862 ASPAP45381 313 aa9.07□□□□□ -0.96
NUP88-213ENST00000576862 BEND4Q6ZU67 534 aa9.07□□□□□ -0.96
NUP88-213ENST00000576862 ERMP1Q7Z2K6 904 aa9.07□□□□□ -0.96
NUP88-213ENST00000576862 CLEC10AQ8IUN9 316 aa9.07□□□□□ -0.96
NUP88-213ENST00000576862 TMEM87AQ8NBN3 555 aa9.07□□□□□ -0.96
NUP88-213ENST00000576862 EZH1Q92800 747 aaPredicted RBP9.07□□□□□ -0.96
NUP88-213ENST00000576862 FAM83CQ9BQN1 747 aa9.07□□□□□ -0.96
NUP88-213ENST00000576862 RSRP1Q9BUV0 290 aa9.07□□□□□ -0.96
NUP88-213ENST00000576862 KCNF1Q9H3M0 494 aa9.07□□□□□ -0.96
NUP88-213ENST00000576862 ACSS3Q9H6R3 686 aa9.07□□□□□ -0.96
NUP88-213ENST00000576862 C7orf69Q9H7B7 122 aa9.07□□□□□ -0.96
NUP88-213ENST00000576862 STOML1Q9UBI4 398 aa9.07□□□□□ -0.96
NUP88-213ENST00000576862 HMX2A2RU54 273 aa9.06□□□□□ -0.96
NUP88-213ENST00000576862 USP11P51784 963 aa9.06□□□□□ -0.96
NUP88-213ENST00000576862 HNRNPUQ00839 825 aaKnown RBP eCLIP9.06□□□□□ -0.96
NUP88-213ENST00000576862 SEPT6Q14141 434 aa9.06□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms