RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 MRPS27Q92552 414 aaKnown RBP11.75□□□□□ -0.53
VPS53-220ENST00000576149 GJB4Q9NTQ9 266 aa11.75□□□□□ -0.53
VPS53-220ENST00000576149 CLIC4Q9Y696 253 aa11.75□□□□□ -0.53
VPS53-220ENST00000576149 PHLPP1O60346 1717 aa11.74□□□□□ -0.53
VPS53-220ENST00000576149 DOCK2Q92608 1830 aa11.74□□□□□ -0.53
VPS53-220ENST00000576149 CDKL5O76039 1030 aa11.74□□□□□ -0.53
VPS53-220ENST00000576149 KIF23Q02241 960 aaPredicted RBP11.74□□□□□ -0.53
VPS53-220ENST00000576149 SGMS1Q86VZ5 419 aa11.74□□□□□ -0.53
VPS53-220ENST00000576149 PLA2G4DQ86XP0 818 aa11.74□□□□□ -0.53
VPS53-220ENST00000576149 FMR1NBQ8N0W7 255 aaPredicted RBP11.74□□□□□ -0.53
VPS53-220ENST00000576149 KCNG4Q8TDN1 519 aa11.74□□□□□ -0.53
VPS53-220ENST00000576149 NAPBQ9H115 298 aa11.74□□□□□ -0.53
VPS53-220ENST00000576149 KCNF1Q9H3M0 494 aa11.74□□□□□ -0.53
VPS53-220ENST00000576149 SPTLC3Q9NUV7 552 aa11.74□□□□□ -0.53
VPS53-220ENST00000576149 KIF28PB7ZC32 967 aa11.74□□□□□ -0.53
VPS53-220ENST00000576149 BCAMP50895 628 aa11.74□□□□□ -0.53
VPS53-220ENST00000576149 IQCB1Q15051 598 aa11.74□□□□□ -0.53
VPS53-220ENST00000576149 STK38Q15208 465 aa11.74□□□□□ -0.53
VPS53-220ENST00000576149 STX1AQ16623 288 aa11.74□□□□□ -0.53
VPS53-220ENST00000576149 TMED8Q6PL24 325 aaPredicted RBP11.74□□□□□ -0.53
VPS53-220ENST00000576149 BARGINQ6ZT62 677 aa11.74□□□□□ -0.53
VPS53-220ENST00000576149 ARMT1Q9H993 441 aa11.74□□□□□ -0.53
VPS53-220ENST00000576149 LY9Q9HBG7 655 aa11.74□□□□□ -0.53
VPS53-220ENST00000576149 SENP2Q9HC62 589 aa11.74□□□□□ -0.53
VPS53-220ENST00000576149 MYH14Q7Z406 1995 aaKnown RBP11.73□□□□□ -0.53
VPS53-220ENST00000576149 GSG1L2A8MUP6 293 aa11.73□□□□□ -0.53
VPS53-220ENST00000576149 CDC27P30260 824 aa11.73□□□□□ -0.53
VPS53-220ENST00000576149 LIFRP42702 1097 aa11.73□□□□□ -0.53
VPS53-220ENST00000576149 ZNF75DP51815 510 aa11.73□□□□□ -0.53
VPS53-220ENST00000576149 CHRNDQ07001 517 aa11.73□□□□□ -0.53
VPS53-220ENST00000576149 SMARCC1Q92922 1105 aaPredicted RBP11.73□□□□□ -0.53
VPS53-220ENST00000576149 PNPLA7Q6ZV29 1317 aa11.73□□□□□ -0.53
VPS53-220ENST00000576149 SPTLC2O15270 562 aa11.72□□□□□ -0.53
VPS53-220ENST00000576149 ZBTB43O43298 467 aa11.72□□□□□ -0.53
VPS53-220ENST00000576149 GNAT2P19087 354 aa11.72□□□□□ -0.53
VPS53-220ENST00000576149 SF3A1Q15459 793 aaKnown RBP11.72□□□□□ -0.53
VPS53-220ENST00000576149 NTRK3Q16288 839 aa11.72□□□□□ -0.53
VPS53-220ENST00000576149 TMEM67Q5HYA8 995 aa11.72□□□□□ -0.53
VPS53-220ENST00000576149 CPLX2Q6PUV4 134 aaKnown RBP11.72□□□□□ -0.53
VPS53-220ENST00000576149 SYNE3Q6ZMZ3 975 aa11.72□□□□□ -0.53
VPS53-220ENST00000576149 C11orf57Q6ZUT1 292 aaPredicted RBP11.72□□□□□ -0.53
VPS53-220ENST00000576149 ARHGAP30Q7Z6I6 1101 aaPredicted RBP11.72□□□□□ -0.53
VPS53-220ENST00000576149 KIAA1524Q8TCG1 905 aa11.72□□□□□ -0.53
VPS53-220ENST00000576149 ZNF592Q92610 1267 aa11.72□□□□□ -0.53
VPS53-220ENST00000576149 ALG1Q9BT22 464 aa11.72□□□□□ -0.53
VPS53-220ENST00000576149 TRIM5Q9C035 493 aa11.72□□□□□ -0.53
VPS53-220ENST00000576149 CNNM2Q9H8M5 875 aa11.72□□□□□ -0.53
VPS53-220ENST00000576149 INCENPQ9NQS7 918 aa11.72□□□□□ -0.53
VPS53-220ENST00000576149 ZSWIM5Q9P217 1185 aa11.72□□□□□ -0.53
VPS53-220ENST00000576149 ZNF652Q9Y2D9 606 aa11.72□□□□□ -0.53
VPS53-220ENST00000576149 LAMB2P55268 1798 aa11.72□□□□□ -0.53
VPS53-220ENST00000576149 RXRAP19793 462 aa11.72□□□□□ -0.53
VPS53-220ENST00000576149 CTDSPL2Q05D32 466 aa11.72□□□□□ -0.53
VPS53-220ENST00000576149 AKNAD1Q5T1N1 836 aa11.72□□□□□ -0.53
VPS53-220ENST00000576149 ANO1Q5XXA6 986 aa11.72□□□□□ -0.53
VPS53-220ENST00000576149 CLEC4GQ6UXB4 293 aa11.72□□□□□ -0.53
VPS53-220ENST00000576149 MICU3Q86XE3 530 aa11.72□□□□□ -0.53
VPS53-220ENST00000576149 FAM217BQ9NTX9 383 aaPredicted RBP11.72□□□□□ -0.53
VPS53-220ENST00000576149 GTF3C5Q9Y5Q8 519 aaPredicted RBP11.72□□□□□ -0.53
VPS53-220ENST00000576149 TACC3Q9Y6A5 838 aa11.72□□□□□ -0.53
VPS53-220ENST00000576149 BCL9LQ86UU0 1499 aa11.72□□□□□ -0.53
VPS53-220ENST00000576149 A0A1B0GVL5 298 aa11.71□□□□□ -0.53
VPS53-220ENST00000576149 NDUFA8P51970 172 aa11.71□□□□□ -0.53
VPS53-220ENST00000576149 SARM1Q6SZW1 724 aa11.71□□□□□ -0.53
VPS53-220ENST00000576149 NFXL1Q6ZNB6 911 aa11.71□□□□□ -0.53
VPS53-220ENST00000576149 C17orf53Q8N3J3 647 aaPredicted RBP11.71□□□□□ -0.53
VPS53-220ENST00000576149 LCORLQ8N3X6 602 aa11.71□□□□□ -0.53
VPS53-220ENST00000576149 AIFM3Q96NN9 605 aa11.71□□□□□ -0.53
VPS53-220ENST00000576149 KRT23Q9C075 422 aa11.71□□□□□ -0.53
VPS53-220ENST00000576149 ANO10Q9NW15 660 aa11.71□□□□□ -0.53
VPS53-220ENST00000576149 TIAM2Q8IVF5 1701 aa11.71□□□□□ -0.53
VPS53-220ENST00000576149 GOLGA8AA7E2F4 631 aa11.71□□□□□ -0.54
VPS53-220ENST00000576149 KCNQ2O43526 872 aa11.71□□□□□ -0.54
VPS53-220ENST00000576149 PRKAB2O43741 272 aa11.71□□□□□ -0.54
VPS53-220ENST00000576149 KRT40Q6A162 431 aa11.71□□□□□ -0.54
VPS53-220ENST00000576149 MFSD6Q6ZSS7 791 aa11.71□□□□□ -0.54
VPS53-220ENST00000576149 PHKBQ93100 1093 aa11.71□□□□□ -0.54
VPS53-220ENST00000576149 CDC5LQ99459 802 aaKnown RBP11.71□□□□□ -0.54
VPS53-220ENST00000576149 NACAP1Q9BZK3 213 aa11.71□□□□□ -0.54
VPS53-220ENST00000576149 PYCARDQ9ULZ3 195 aa11.71□□□□□ -0.54
VPS53-220ENST00000576149 SLC4A4Q9Y6R1 1079 aa11.71□□□□□ -0.54
VPS53-220ENST00000576149 GOLGA6L19H0YKK7 550 aa11.7□□□□□ -0.54
VPS53-220ENST00000576149 IFIT3O14879 490 aaKnown RBP11.7□□□□□ -0.54
VPS53-220ENST00000576149 PTGS1P23219 599 aa11.7□□□□□ -0.54
VPS53-220ENST00000576149 IARSP41252 1262 aaKnown RBP11.7□□□□□ -0.54
VPS53-220ENST00000576149 SLC39A14Q15043 492 aa11.7□□□□□ -0.54
VPS53-220ENST00000576149 AXDND1Q5T1B0 1012 aaPredicted RBP11.7□□□□□ -0.54
VPS53-220ENST00000576149 VPS37DQ86XT2 251 aa11.7□□□□□ -0.54
VPS53-220ENST00000576149 STAG1Q8WVM7 1258 aa11.7□□□□□ -0.54
VPS53-220ENST00000576149 SDF4Q9BRK5 362 aa11.7□□□□□ -0.54
VPS53-220ENST00000576149 LRP2BPQ9P2M1 347 aa11.7□□□□□ -0.54
VPS53-220ENST00000576149 NID2Q14112 1375 aa11.7□□□□□ -0.54
VPS53-220ENST00000576149 UQCRHLA0A096LP55 91 aa11.7□□□□□ -0.54
VPS53-220ENST00000576149 NUTM2BA6NNL0 878 aaPredicted RBP11.7□□□□□ -0.54
VPS53-220ENST00000576149 NUTM2EB1AL46 878 aaPredicted RBP11.7□□□□□ -0.54
VPS53-220ENST00000576149 RANBP6O60518 1105 aaKnown RBP11.7□□□□□ -0.54
VPS53-220ENST00000576149 UQCRHP07919 91 aa11.7□□□□□ -0.54
VPS53-220ENST00000576149 CDC25BP30305 580 aa11.7□□□□□ -0.54
VPS53-220ENST00000576149 TDO2P48775 406 aa11.7□□□□□ -0.54
VPS53-220ENST00000576149 SF3B3Q15393 1217 aaKnown RBP11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms