RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 APPBP2Q92624 585 aa7.75□□□□□ -1.17
VPS53-219ENST00000576019 SRCIN1Q9C0H9 1055 aa7.75□□□□□ -1.17
VPS53-219ENST00000576019 FAM13BQ9NYF5 915 aa7.75□□□□□ -1.17
VPS53-219ENST00000576019 STRIP2Q9ULQ0 834 aa7.75□□□□□ -1.17
VPS53-219ENST00000576019 R3HCC1Q9Y3T6 440 aaKnown RBP7.75□□□□□ -1.17
VPS53-219ENST00000576019 PTPRUQ92729 1446 aa7.75□□□□□ -1.17
VPS53-219ENST00000576019 CEP152O94986 1710 aa7.75□□□□□ -1.17
VPS53-219ENST00000576019 XRN1Q8IZH2 1706 aaKnown RBP7.75□□□□□ -1.17
VPS53-219ENST00000576019 CACNA1AO00555 2505 aa7.74□□□□□ -1.17
VPS53-219ENST00000576019 PHACTR2O75167 634 aa7.74□□□□□ -1.17
VPS53-219ENST00000576019 GBP2P32456 591 aaPredicted RBP7.74□□□□□ -1.17
VPS53-219ENST00000576019 EIF4A3P38919 411 aaKnown RBP7.74□□□□□ -1.17
VPS53-219ENST00000576019 SKOR1P84550 965 aa7.74□□□□□ -1.17
VPS53-219ENST00000576019 PPP1R26Q5T8A7 1209 aaPredicted RBP7.74□□□□□ -1.17
VPS53-219ENST00000576019 ZNF438Q7Z4V0 828 aa7.74□□□□□ -1.17
VPS53-219ENST00000576019 FMNL3Q8IVF7 1028 aa7.74□□□□□ -1.17
VPS53-219ENST00000576019 ZNF295-AS1Q8N0V1 137 aa7.74□□□□□ -1.17
VPS53-219ENST00000576019 LILRB2Q8N423 598 aa7.74□□□□□ -1.17
VPS53-219ENST00000576019 MORC4Q8TE76 937 aa7.74□□□□□ -1.17
VPS53-219ENST00000576019 ORAI2Q96SN7 254 aa7.74□□□□□ -1.17
VPS53-219ENST00000576019 DNAJC7Q99615 494 aa7.74□□□□□ -1.17
VPS53-219ENST00000576019 NOC4LQ9BVI4 516 aaKnown RBP7.74□□□□□ -1.17
VPS53-219ENST00000576019 ZFYVE28Q9HCC9 887 aa7.74□□□□□ -1.17
VPS53-219ENST00000576019 PRR12Q9ULL5 1215 aa7.74□□□□□ -1.17
VPS53-219ENST00000576019 USP20Q9Y2K6 914 aa7.74□□□□□ -1.17
VPS53-219ENST00000576019 COL24A1Q17RW2 1714 aa7.74□□□□□ -1.17
VPS53-219ENST00000576019 ABCA3Q99758 1704 aa7.74□□□□□ -1.17
VPS53-219ENST00000576019 PLSCR1O15162 318 aa7.73□□□□□ -1.17
VPS53-219ENST00000576019 MICAL2O94851 1124 aa7.73□□□□□ -1.17
VPS53-219ENST00000576019 PDGFRBP09619 1106 aa7.73□□□□□ -1.17
VPS53-219ENST00000576019 SOX9P48436 509 aa7.73□□□□□ -1.17
VPS53-219ENST00000576019 GYS2P54840 703 aa7.73□□□□□ -1.17
VPS53-219ENST00000576019 TRIM32Q13049 653 aa7.73□□□□□ -1.17
VPS53-219ENST00000576019 RELL1Q8IUW5 271 aa7.73□□□□□ -1.17
VPS53-219ENST00000576019 CCDC146Q8IYE0 955 aa7.73□□□□□ -1.17
VPS53-219ENST00000576019 CCDC116Q8IYX3 515 aa7.73□□□□□ -1.17
VPS53-219ENST00000576019 GCC1Q96CN9 775 aa7.73□□□□□ -1.17
VPS53-219ENST00000576019 ESYT1Q9BSJ8 1104 aa7.73□□□□□ -1.17
VPS53-219ENST00000576019 RSRP1Q9BUV0 290 aa7.73□□□□□ -1.17
VPS53-219ENST00000576019 IL21Q9HBE4 155 aa7.73□□□□□ -1.17
VPS53-219ENST00000576019 PRKAG3Q9UGI9 489 aa7.73□□□□□ -1.17
VPS53-219ENST00000576019 HRH3Q9Y5N1 445 aa7.73□□□□□ -1.17
VPS53-219ENST00000576019 TLL2Q9Y6L7 1015 aa7.73□□□□□ -1.17
VPS53-219ENST00000576019 TXLNAP40222 546 aa7.72□□□□□ -1.17
VPS53-219ENST00000576019 GRM5P41594 1212 aa7.72□□□□□ -1.17
VPS53-219ENST00000576019 GRM2Q14416 872 aa7.72□□□□□ -1.17
VPS53-219ENST00000576019 CCDC85BQ15834 202 aaPredicted RBP7.72□□□□□ -1.17
VPS53-219ENST00000576019 MAP3K11Q16584 847 aa7.72□□□□□ -1.17
VPS53-219ENST00000576019 ODR4Q5SWX8 454 aa7.72□□□□□ -1.17
VPS53-219ENST00000576019 CCDC81Q6ZN84 652 aa7.72□□□□□ -1.17
VPS53-219ENST00000576019 ZNF296Q8WUU4 475 aaPredicted RBP7.72□□□□□ -1.17
VPS53-219ENST00000576019 PRDM16Q9HAZ2 1276 aa7.72□□□□□ -1.17
VPS53-219ENST00000576019 NMRK2Q9NPI5 230 aa7.72□□□□□ -1.17
VPS53-219ENST00000576019 NPHP3Q7Z494 1330 aa7.72□□□□□ -1.17
VPS53-219ENST00000576019 SMAD7O15105 426 aaKnown RBP7.71□□□□□ -1.18
VPS53-219ENST00000576019 GSTT1P30711 240 aa7.71□□□□□ -1.18
VPS53-219ENST00000576019 FAM160A1Q05DH4 1040 aa7.71□□□□□ -1.18
VPS53-219ENST00000576019 PWP1Q13610 501 aa7.71□□□□□ -1.18
VPS53-219ENST00000576019 IDI1Q13907 227 aa7.71□□□□□ -1.18
VPS53-219ENST00000576019 TRIP4Q15650 581 aaPredicted RBP7.71□□□□□ -1.18
VPS53-219ENST00000576019 SLC15A2Q16348 729 aa7.71□□□□□ -1.18
VPS53-219ENST00000576019 HOMER1Q86YM7 354 aa7.71□□□□□ -1.18
VPS53-219ENST00000576019 CELF2-AS1Q8N7Q2 184 aa7.71□□□□□ -1.18
VPS53-219ENST00000576019 EHBP1Q8NDI1 1231 aa7.71□□□□□ -1.18
VPS53-219ENST00000576019 TMEM74Q96NL1 305 aa7.71□□□□□ -1.18
VPS53-219ENST00000576019 MAGEC2Q9UBF1 373 aaPredicted RBP7.71□□□□□ -1.18
VPS53-219ENST00000576019 SPATA31A5Q5VU36 1347 aa7.71□□□□□ -1.18
VPS53-219ENST00000576019 SPATA31A7Q8IWB4 1347 aa7.71□□□□□ -1.18
VPS53-219ENST00000576019 MTUS2Q5JR59 1369 aa7.71□□□□□ -1.18
VPS53-219ENST00000576019 MBD5Q9P267 1494 aa7.7□□□□□ -1.18
VPS53-219ENST00000576019 LBX1P52954 281 aa7.7□□□□□ -1.18
VPS53-219ENST00000576019 IFRD2Q12894 506 aaPredicted RBP7.7□□□□□ -1.18
VPS53-219ENST00000576019 ARSHQ5FYA8 562 aa7.7□□□□□ -1.18
VPS53-219ENST00000576019 HABP4Q5JVS0 413 aaKnown RBP7.7□□□□□ -1.18
VPS53-219ENST00000576019 LRP10Q7Z4F1 713 aa7.7□□□□□ -1.18
VPS53-219ENST00000576019 KIAA0907Q7Z7F0 614 aaPredicted RBP7.7□□□□□ -1.18
VPS53-219ENST00000576019 PRPF38AQ8NAV1 312 aaKnown RBP7.7□□□□□ -1.18
VPS53-219ENST00000576019 TRPM4Q8TD43 1214 aa7.7□□□□□ -1.18
VPS53-219ENST00000576019 PMM1Q92871 262 aa7.7□□□□□ -1.18
VPS53-219ENST00000576019 CDK15Q96Q40 435 aa7.7□□□□□ -1.18
VPS53-219ENST00000576019 SUV39H2Q9H5I1 410 aa7.7□□□□□ -1.18
VPS53-219ENST00000576019 STK32BQ9NY57 414 aa7.7□□□□□ -1.18
VPS53-219ENST00000576019 UBP1Q9NZI7 540 aa7.7□□□□□ -1.18
VPS53-219ENST00000576019 TMEM63CQ9P1W3 806 aa7.7□□□□□ -1.18
VPS53-219ENST00000576019 TGFBR3LH3BV60 316 aa7.69□□□□□ -1.18
VPS53-219ENST00000576019 PPEF1O14829 653 aaPredicted RBP7.69□□□□□ -1.18
VPS53-219ENST00000576019 FBXO24O75426 580 aa7.69□□□□□ -1.18
VPS53-219ENST00000576019 HCLS1P14317 486 aaPredicted RBP7.69□□□□□ -1.18
VPS53-219ENST00000576019 IDH3AP50213 366 aa7.69□□□□□ -1.18
VPS53-219ENST00000576019 TBX4P57082 545 aa7.69□□□□□ -1.18
VPS53-219ENST00000576019 MAP3K10Q02779 954 aa7.69□□□□□ -1.18
VPS53-219ENST00000576019 CENPCQ03188 943 aa7.69□□□□□ -1.18
VPS53-219ENST00000576019 C1orf53Q5VUE5 145 aa7.69□□□□□ -1.18
VPS53-219ENST00000576019 PCNX4Q63HM2 1172 aa7.69□□□□□ -1.18
VPS53-219ENST00000576019 FBXL19Q6PCT2 694 aa7.69□□□□□ -1.18
VPS53-219ENST00000576019 SLC17A8Q8NDX2 589 aa7.69□□□□□ -1.18
VPS53-219ENST00000576019 RHPN1Q8TCX5 695 aa7.69□□□□□ -1.18
VPS53-219ENST00000576019 IER2Q9BTL4 223 aa7.69□□□□□ -1.18
VPS53-219ENST00000576019 SRRTQ9BXP5 876 aaKnown RBP7.69□□□□□ -1.18
VPS53-219ENST00000576019 ST7Q9NRC1 585 aa7.69□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms