RNA–Protein interactions for RNA: ENST00000574428.5

ATPAF1-213, Transcript of ATP synthase mitochondrial F1 complex assembly factor 1, humanhuman

TSL 1 (best) BASIC

Gene ATPAF1, Length 1,760 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATPAF1-213ENST00000574428 CRKP46108 304 aa28.73■■■□□ 2.19
ATPAF1-213ENST00000574428 SDR42E1Q8WUS8 393 aa28.73■■■□□ 2.19
ATPAF1-213ENST00000574428 GSG1L2A8MUP6 293 aa28.73■■■□□ 2.19
ATPAF1-213ENST00000574428 PATL2C9JE40 543 aaKnown RBP28.73■■■□□ 2.19
ATPAF1-213ENST00000574428 ANP32AP39687 249 aaKnown RBP28.73■■■□□ 2.19
ATPAF1-213ENST00000574428 PPP4CP60510 307 aa28.73■■■□□ 2.19
ATPAF1-213ENST00000574428 SH3RF3Q8TEJ3 882 aaPredicted RBP28.73■■■□□ 2.19
ATPAF1-213ENST00000574428 EPB41L4AQ9HCS5 686 aaPredicted RBP28.73■■■□□ 2.19
ATPAF1-213ENST00000574428 RNF181Q9P0P0 153 aa28.73■■■□□ 2.19
ATPAF1-213ENST00000574428 CREB3L3Q68CJ9 461 aa28.72■■■□□ 2.19
ATPAF1-213ENST00000574428 HHIPL2Q6UWX4 724 aa28.72■■■□□ 2.19
ATPAF1-213ENST00000574428 TIAM2Q8IVF5 1701 aa28.71■■■□□ 2.19
ATPAF1-213ENST00000574428 FGAP02671 866 aa28.71■■■□□ 2.19
ATPAF1-213ENST00000574428 AGBL3Q8NEM8 1001 aa28.71■■■□□ 2.19
ATPAF1-213ENST00000574428 CRNKL1Q9BZJ0 848 aaKnown RBP28.71■■■□□ 2.19
ATPAF1-213ENST00000574428 PCDHAC2Q9Y5I4 1007 aa28.71■■■□□ 2.19
ATPAF1-213ENST00000574428 SLC27A2O14975 620 aa28.7■■■□□ 2.19
ATPAF1-213ENST00000574428 KIF2CQ99661 725 aa28.7■■■□□ 2.19
ATPAF1-213ENST00000574428 SERPINA10Q9UK55 444 aa28.7■■■□□ 2.19
ATPAF1-213ENST00000574428 GJA3Q9Y6H8 435 aa28.7■■■□□ 2.19
ATPAF1-213ENST00000574428 RBM5P52756 815 aaKnown RBP eCLIP28.7■■■□□ 2.18
ATPAF1-213ENST00000574428 HDLBPQ00341 1268 aaKnown RBP28.7■■■□□ 2.18
ATPAF1-213ENST00000574428 RASEFQ8IZ41 740 aa28.7■■■□□ 2.18
ATPAF1-213ENST00000574428 IFNL3Q8IZI9 196 aa28.7■■■□□ 2.18
ATPAF1-213ENST00000574428 C9orf131Q5VYM1 1079 aa28.69■■■□□ 2.18
ATPAF1-213ENST00000574428 ZDHHC15Q96MV8 337 aa28.69■■■□□ 2.18
ATPAF1-213ENST00000574428 MRIQ9BWK5 157 aa28.69■■■□□ 2.18
ATPAF1-213ENST00000574428 TAF6LQ9Y6J9 622 aa28.69■■■□□ 2.18
ATPAF1-213ENST00000574428 GRIN3BO60391 1043 aa28.68■■■□□ 2.18
ATPAF1-213ENST00000574428 APOBEC3HQ6NTF7 200 aaKnown RBP28.68■■■□□ 2.18
ATPAF1-213ENST00000574428 SNX14Q9Y5W7 946 aa28.68■■■□□ 2.18
ATPAF1-213ENST00000574428 USP17L8P0C7I0 530 aa28.67■■■□□ 2.18
ATPAF1-213ENST00000574428 RHBDL3P58872 404 aa28.67■■■□□ 2.18
ATPAF1-213ENST00000574428 CERS3Q8IU89 383 aa28.67■■■□□ 2.18
ATPAF1-213ENST00000574428 OGFOD1Q8N543 542 aa28.67■■■□□ 2.18
ATPAF1-213ENST00000574428 NACAP1Q9BZK3 213 aa28.67■■■□□ 2.18
ATPAF1-213ENST00000574428 NAPBQ9H115 298 aa28.67■■■□□ 2.18
ATPAF1-213ENST00000574428 CTNNA3Q9UI47 895 aa28.67■■■□□ 2.18
ATPAF1-213ENST00000574428 CYP21A2P08686 494 aa28.67■■■□□ 2.18
ATPAF1-213ENST00000574428 PLCG2P16885 1265 aa28.67■■■□□ 2.18
ATPAF1-213ENST00000574428 TDO2P48775 406 aa28.67■■■□□ 2.18
ATPAF1-213ENST00000574428 ALX1Q15699 326 aa28.67■■■□□ 2.18
ATPAF1-213ENST00000574428 CFAP100Q494V2 611 aa28.67■■■□□ 2.18
ATPAF1-213ENST00000574428 RNF20Q5VTR2 975 aa28.67■■■□□ 2.18
ATPAF1-213ENST00000574428 KCNB2Q92953 911 aa28.67■■■□□ 2.18
ATPAF1-213ENST00000574428 HDAC9Q9UKV0 1011 aa28.67■■■□□ 2.18
ATPAF1-213ENST00000574428 RPAP1Q9BWH6 1393 aaPredicted RBP28.67■■■□□ 2.18
ATPAF1-213ENST00000574428 GMPSP49915 693 aaPredicted RBP28.66■■■□□ 2.18
ATPAF1-213ENST00000574428 ANAPC15P60006 121 aa28.66■■■□□ 2.18
ATPAF1-213ENST00000574428 TEX11Q8IYF3 940 aa28.66■■■□□ 2.18
ATPAF1-213ENST00000574428 ZMYM6O95789 1325 aa28.66■■■□□ 2.18
ATPAF1-213ENST00000574428 RPS12P25398 132 aaKnown RBP28.65■■■□□ 2.18
ATPAF1-213ENST00000574428 HAND2P61296 217 aa28.65■■■□□ 2.18
ATPAF1-213ENST00000574428 SHTN1A0MZ66 631 aa28.65■■■□□ 2.18
ATPAF1-213ENST00000574428 ZKSCAN1P17029 563 aaPredicted RBP28.65■■■□□ 2.18
ATPAF1-213ENST00000574428 USP5P45974 858 aa28.65■■■□□ 2.18
ATPAF1-213ENST00000574428 TGFBRAP1Q8WUH2 860 aa28.65■■■□□ 2.18
ATPAF1-213ENST00000574428 USP40Q9NVE5 1235 aa28.65■■■□□ 2.18
ATPAF1-213ENST00000574428 CDK5RAP2Q96SN8 1893 aa28.64■■■□□ 2.18
ATPAF1-213ENST00000574428 CDC42EP5Q6NZY7 148 aa28.64■■■□□ 2.18
ATPAF1-213ENST00000574428 DCP1AQ9NPI6 582 aaPredicted RBP28.64■■■□□ 2.18
ATPAF1-213ENST00000574428 IMMTQ16891 758 aaKnown RBP28.63■■■□□ 2.17
ATPAF1-213ENST00000574428 ATP8A2Q9NTI2 1148 aa28.63■■■□□ 2.17
ATPAF1-213ENST00000574428 BAZ2AQ9UIF9 1905 aaKnown RBP28.62■■■□□ 2.17
ATPAF1-213ENST00000574428 ADCK5Q3MIX3 580 aa28.62■■■□□ 2.17
ATPAF1-213ENST00000574428 GIMAP6Q6P9H5 292 aa28.62■■■□□ 2.17
ATPAF1-213ENST00000574428 MAPKAPK5Q8IW41 473 aa28.62■■■□□ 2.17
ATPAF1-213ENST00000574428 GPC2Q8N158 579 aa28.62■■■□□ 2.17
ATPAF1-213ENST00000574428 DDRGK1Q96HY6 314 aa28.62■■■□□ 2.17
ATPAF1-213ENST00000574428 LAMA4Q16363 1823 aa28.61■■■□□ 2.17
ATPAF1-213ENST00000574428 ZNF213O14771 459 aa28.61■■■□□ 2.17
ATPAF1-213ENST00000574428 IL17RAQ96F46 866 aa28.61■■■□□ 2.17
ATPAF1-213ENST00000574428 PRMT6Q96LA8 375 aaPredicted RBP28.61■■■□□ 2.17
ATPAF1-213ENST00000574428 NAV1Q8NEY1 1877 aa28.61■■■□□ 2.17
ATPAF1-213ENST00000574428 DLGAP5Q15398 846 aa28.6■■■□□ 2.17
ATPAF1-213ENST00000574428 DPF2Q92785 391 aa28.6■■■□□ 2.17
ATPAF1-213ENST00000574428 NBPF3Q9H094 633 aa28.6■■■□□ 2.17
ATPAF1-213ENST00000574428 MKRN1Q9UHC7 482 aaKnown RBP28.6■■■□□ 2.17
ATPAF1-213ENST00000574428 ECM29Q5VYK3 1845 aa28.6■■■□□ 2.17
ATPAF1-213ENST00000574428 SPDYE2BA6NHP3 402 aa28.6■■■□□ 2.17
ATPAF1-213ENST00000574428 WDHD1O75717 1129 aaPredicted RBP28.6■■■□□ 2.17
ATPAF1-213ENST00000574428 SPDYE6P0CI01 402 aa28.6■■■□□ 2.17
ATPAF1-213ENST00000574428 MICALL2Q8IY33 904 aa28.6■■■□□ 2.17
ATPAF1-213ENST00000574428 FLT1P17948 1338 aa28.6■■■□□ 2.17
ATPAF1-213ENST00000574428 FOCADQ5VW36 1801 aa28.59■■■□□ 2.17
ATPAF1-213ENST00000574428 CYP2D7A0A087X1C5 515 aa28.59■■■□□ 2.17
ATPAF1-213ENST00000574428 CACNB3P54284 484 aa28.59■■■□□ 2.17
ATPAF1-213ENST00000574428 ZNF280AP59817 542 aaPredicted RBP28.59■■■□□ 2.17
ATPAF1-213ENST00000574428 PICALMQ13492 652 aa28.59■■■□□ 2.17
ATPAF1-213ENST00000574428 TSGA10IPQ3SY00 556 aa28.59■■■□□ 2.17
ATPAF1-213ENST00000574428 CTR9Q6PD62 1173 aa28.59■■■□□ 2.17
ATPAF1-213ENST00000574428 STOX1Q6ZVD7 989 aa28.59■■■□□ 2.17
ATPAF1-213ENST00000574428 JAKMIP1Q96N16 626 aaKnown RBP28.59■■■□□ 2.17
ATPAF1-213ENST00000574428 IPO9Q96P70 1041 aaKnown RBP28.59■■■□□ 2.17
ATPAF1-213ENST00000574428 TDRD3Q9H7E2 651 aaKnown RBP28.59■■■□□ 2.17
ATPAF1-213ENST00000574428 MYOZ2Q9NPC6 264 aa28.59■■■□□ 2.17
ATPAF1-213ENST00000574428 MCM9Q9NXL9 1143 aa28.59■■■□□ 2.17
ATPAF1-213ENST00000574428 MINDY4BA8MYZ0 360 aa28.58■■■□□ 2.17
ATPAF1-213ENST00000574428 USP17L12C9JPN9 530 aa28.58■■■□□ 2.17
ATPAF1-213ENST00000574428 USP17L21D6R901 530 aa28.58■■■□□ 2.17
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms