RNA–Protein interactions for RNA: ENST00000570874.1

SMG6-208, Transcript of SMG6, nonsense mediated mRNA decay factor, human

TSL 4

Gene SMG6, Length 533 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SMG6-208	ENST00000570874	KCNH5	Q8NCM2	988 aa		4.23	□□□□□ -1.73
SMG6-208	ENST00000570874	IL17RE	Q8NFR9	667 aa		4.23	□□□□□ -1.73
SMG6-208	ENST00000570874	GOLGA1	Q92805	767 aa		4.23	□□□□□ -1.73
SMG6-208	ENST00000570874	ERP27	Q96DN0	273 aa		4.23	□□□□□ -1.73
SMG6-208	ENST00000570874	ZNF700	Q9H0M5	742 aa		4.23	□□□□□ -1.73
SMG6-208	ENST00000570874	ALDH8A1	Q9H2A2	487 aa	Predicted RBP	4.23	□□□□□ -1.73
SMG6-208	ENST00000570874	ALG2	Q9H553	416 aa		4.23	□□□□□ -1.73
SMG6-208	ENST00000570874	LGR6	Q9HBX8	967 aa		4.23	□□□□□ -1.73
SMG6-208	ENST00000570874	HOMER2	Q9NSB8	354 aa		4.23	□□□□□ -1.73
SMG6-208	ENST00000570874	SLAIN2	Q9P270	581 aa		4.23	□□□□□ -1.73
SMG6-208	ENST00000570874	STK17A	Q9UEE5	414 aa		4.23	□□□□□ -1.73
SMG6-208	ENST00000570874	MKRN1	Q9UHC7	482 aa	Known RBP	4.23	□□□□□ -1.73
SMG6-208	ENST00000570874	PRDM4	Q9UKN5	801 aa		4.23	□□□□□ -1.73
SMG6-208	ENST00000570874	NOB1	Q9ULX3	412 aa	Known RBP	4.23	□□□□□ -1.73
SMG6-208	ENST00000570874	NOVA2	Q9UNW9	492 aa	Known RBP	4.23	□□□□□ -1.73
SMG6-208	ENST00000570874	RABGAP1	Q9Y3P9	1069 aa		4.23	□□□□□ -1.73
SMG6-208	ENST00000570874	MYO5A	Q9Y4I1	1855 aa	Known RBP	4.23	□□□□□ -1.73
SMG6-208	ENST00000570874	COL5A2	P05997	1499 aa	Predicted RBP	4.23	□□□□□ -1.73
SMG6-208	ENST00000570874	TAF1L	Q8IZX4	1826 aa		4.23	□□□□□ -1.73
SMG6-208	ENST00000570874	GNAT3	A8MTJ3	354 aa		4.22	□□□□□ -1.73
SMG6-208	ENST00000570874		K7ELQ4	463 aa	Predicted RBP	4.22	□□□□□ -1.73
SMG6-208	ENST00000570874	CHL1	O00533	1208 aa		4.22	□□□□□ -1.73
SMG6-208	ENST00000570874	TNFRSF10B	O14763	440 aa		4.22	□□□□□ -1.73
SMG6-208	ENST00000570874	MTA2	O94776	668 aa		4.22	□□□□□ -1.73
SMG6-208	ENST00000570874	BPNT1	O95861	308 aa		4.22	□□□□□ -1.73
SMG6-208	ENST00000570874	RPN1	P04843	607 aa	Known RBP	4.22	□□□□□ -1.73
SMG6-208	ENST00000570874	MYL3	P08590	195 aa		4.22	□□□□□ -1.73
SMG6-208	ENST00000570874	CDC27	P30260	824 aa		4.22	□□□□□ -1.73
SMG6-208	ENST00000570874	CASQ1	P31415	396 aa		4.22	□□□□□ -1.73
SMG6-208	ENST00000570874	CLK1	P49759	484 aa	Known RBP	4.22	□□□□□ -1.73
SMG6-208	ENST00000570874	FANCC	Q00597	558 aa		4.22	□□□□□ -1.73
SMG6-208	ENST00000570874	KIAA2012	Q0VF49	1180 aa		4.22	□□□□□ -1.73
SMG6-208	ENST00000570874	DIXDC1	Q155Q3	683 aa		4.22	□□□□□ -1.73
SMG6-208	ENST00000570874	TWISTNB	Q3B726	338 aa	Predicted RBP	4.22	□□□□□ -1.73
SMG6-208	ENST00000570874	CCDC93	Q567U6	631 aa		4.22	□□□□□ -1.73
SMG6-208	ENST00000570874	HSP90B2P	Q58FF3	399 aa		4.22	□□□□□ -1.73
SMG6-208	ENST00000570874	LDLRAD1	Q5T700	205 aa		4.22	□□□□□ -1.73
SMG6-208	ENST00000570874	LCE2A	Q5TA79	106 aa	Predicted RBP	4.22	□□□□□ -1.73
SMG6-208	ENST00000570874	TTLL5	Q6EMB2	1281 aa		4.22	□□□□□ -1.73
SMG6-208	ENST00000570874	ZNF530	Q6P9A1	599 aa	Predicted RBP	4.22	□□□□□ -1.73
SMG6-208	ENST00000570874	CCDC73	Q6ZRK6	1079 aa		4.22	□□□□□ -1.73
SMG6-208	ENST00000570874	G2E3	Q7L622	706 aa		4.22	□□□□□ -1.73
SMG6-208	ENST00000570874	NDUFAF2	Q8N183	169 aa		4.22	□□□□□ -1.73
SMG6-208	ENST00000570874	STK11IP	Q8N1F8	1099 aa		4.22	□□□□□ -1.73
SMG6-208	ENST00000570874	TMEM57	Q8N5G2	664 aa		4.22	□□□□□ -1.73
SMG6-208	ENST00000570874	GOLGA6L2	Q8N9W4	650 aa	Predicted RBP	4.22	□□□□□ -1.73
SMG6-208	ENST00000570874	GAS2L2	Q8NHY3	880 aa		4.22	□□□□□ -1.73
SMG6-208	ENST00000570874	ARNT2	Q9HBZ2	717 aa		4.22	□□□□□ -1.73
SMG6-208	ENST00000570874	PARP2	Q9UGN5	583 aa		4.22	□□□□□ -1.73
SMG6-208	ENST00000570874	DCTN4	Q9UJW0	460 aa		4.22	□□□□□ -1.73
SMG6-208	ENST00000570874	FBXO2	Q9UK22	296 aa	Predicted RBP	4.22	□□□□□ -1.73
SMG6-208	ENST00000570874	SMC3	Q9UQE7	1217 aa		4.22	□□□□□ -1.73
SMG6-208	ENST00000570874	DIS3	Q9Y2L1	958 aa	Known RBP	4.22	□□□□□ -1.73
SMG6-208	ENST00000570874	THRAP3	Q9Y2W1	955 aa	Known RBP	4.22	□□□□□ -1.73
SMG6-208	ENST00000570874	PCDHB15	Q9Y5E8	787 aa		4.22	□□□□□ -1.73
SMG6-208	ENST00000570874	TAF1	P21675	1872 aa		4.22	□□□□□ -1.73
SMG6-208	ENST00000570874	PSD	A5PKW4	1024 aa	Predicted RBP	4.21	□□□□□ -1.74
SMG6-208	ENST00000570874	DPYSL4	O14531	572 aa		4.21	□□□□□ -1.74
SMG6-208	ENST00000570874	RNMT	O43148	476 aa	Known RBP	4.21	□□□□□ -1.74
SMG6-208	ENST00000570874	NR1I2	O75469	434 aa		4.21	□□□□□ -1.74
SMG6-208	ENST00000570874	HNRNPC	P07910	306 aa	Known RBP eCLIP	4.21	□□□□□ -1.74	3e-7	■■□□□ 12.3
SMG6-208	ENST00000570874	RBP3	P10745	1247 aa		4.21	□□□□□ -1.74
SMG6-208	ENST00000570874	FOSL1	P15407	271 aa		4.21	□□□□□ -1.74
SMG6-208	ENST00000570874	RRM1	P23921	792 aa		4.21	□□□□□ -1.74
SMG6-208	ENST00000570874	SOX11	P35716	441 aa		4.21	□□□□□ -1.74
SMG6-208	ENST00000570874	PDE6B	P35913	854 aa		4.21	□□□□□ -1.74
SMG6-208	ENST00000570874	TNNI2	P48788	182 aa		4.21	□□□□□ -1.74
SMG6-208	ENST00000570874	MDM2	Q00987	491 aa	Predicted RBP	4.21	□□□□□ -1.74
SMG6-208	ENST00000570874	VAC14	Q08AM6	782 aa		4.21	□□□□□ -1.74
SMG6-208	ENST00000570874	SIM2	Q14190	667 aa	Predicted RBP	4.21	□□□□□ -1.74
SMG6-208	ENST00000570874	PDE3A	Q14432	1141 aa		4.21	□□□□□ -1.74
SMG6-208	ENST00000570874	MVP	Q14764	893 aa	Known RBP	4.21	□□□□□ -1.74
SMG6-208	ENST00000570874	LONRF1	Q17RB8	773 aa		4.21	□□□□□ -1.74
SMG6-208	ENST00000570874	GRAMD1B	Q3KR37	738 aa		4.21	□□□□□ -1.74
SMG6-208	ENST00000570874	INO80D	Q53TQ3	878 aa	Predicted RBP	4.21	□□□□□ -1.74
SMG6-208	ENST00000570874	C10orf62	Q5T681	223 aa	Predicted RBP	4.21	□□□□□ -1.74
SMG6-208	ENST00000570874	KLHL10	Q6JEL2	608 aa		4.21	□□□□□ -1.74
SMG6-208	ENST00000570874	ATF7IP	Q6VMQ6	1270 aa		4.21	□□□□□ -1.74
SMG6-208	ENST00000570874	MPRIP	Q6WCQ1	1025 aa		4.21	□□□□□ -1.74
SMG6-208	ENST00000570874	CATIP	Q7Z7H3	387 aa		4.21	□□□□□ -1.74
SMG6-208	ENST00000570874	VPS37D	Q86XT2	251 aa		4.21	□□□□□ -1.74
SMG6-208	ENST00000570874	DZIP1L	Q8IYY4	767 aa	Known RBP	4.21	□□□□□ -1.74
SMG6-208	ENST00000570874	IFNL3	Q8IZI9	196 aa		4.21	□□□□□ -1.74
SMG6-208	ENST00000570874	OGFOD1	Q8N543	542 aa		4.21	□□□□□ -1.74
SMG6-208	ENST00000570874	MYRIP	Q8NFW9	859 aa		4.21	□□□□□ -1.74
SMG6-208	ENST00000570874	FRS2	Q8WU20	508 aa		4.21	□□□□□ -1.74
SMG6-208	ENST00000570874	YY1AP1	Q9H869	796 aa		4.21	□□□□□ -1.74
SMG6-208	ENST00000570874	EGFL7	Q9UHF1	273 aa		4.21	□□□□□ -1.74
SMG6-208	ENST00000570874	TSPYL4	Q9UJ04	414 aa		4.21	□□□□□ -1.74
SMG6-208	ENST00000570874	INTU	Q9ULD6	942 aa		4.21	□□□□□ -1.74
SMG6-208	ENST00000570874	INPP5F	Q9Y2H2	1132 aa		4.21	□□□□□ -1.74
SMG6-208	ENST00000570874	EPB41L3	Q9Y2J2	1087 aa	Predicted RBP	4.21	□□□□□ -1.74
SMG6-208	ENST00000570874	CPD	O75976	1380 aa		4.21	□□□□□ -1.74
SMG6-208	ENST00000570874	CEMIP	Q8WUJ3	1361 aa		4.21	□□□□□ -1.74
SMG6-208	ENST00000570874	MRC1	P22897	1456 aa		4.21	□□□□□ -1.74
SMG6-208	ENST00000570874	MYH7	P12883	1935 aa		4.21	□□□□□ -1.74
SMG6-208	ENST00000570874	BTAF1	O14981	1849 aa		4.21	□□□□□ -1.74
SMG6-208	ENST00000570874	COL5A3	P25940	1745 aa	Predicted RBP	4.21	□□□□□ -1.74
SMG6-208	ENST00000570874		A0A1B0GUL6	1792 aa		4.2	□□□□□ -1.74
SMG6-208	ENST00000570874	LAMB2	P55268	1798 aa		4.2	□□□□□ -1.74

Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms