RNA–Protein interactions for RNA: ENST00000570023.1

VPS39-212, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 337 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-212ENST00000570023 FAAP100Q0VG06 881 aa5.46□□□□□ -1.54
VPS39-212ENST00000570023 AP3B2Q13367 1082 aa5.46□□□□□ -1.54
VPS39-212ENST00000570023 UVSSAQ2YD98 709 aa5.46□□□□□ -1.54
VPS39-212ENST00000570023 EXOSC6Q5RKV6 272 aaKnown RBP5.46□□□□□ -1.54
VPS39-212ENST00000570023 MTERF4Q7Z6M4 381 aaKnown RBP5.46□□□□□ -1.54
VPS39-212ENST00000570023 NPAS4Q8IUM7 802 aa5.46□□□□□ -1.54
VPS39-212ENST00000570023 SMG8Q8ND04 991 aaKnown RBP5.46□□□□□ -1.54
VPS39-212ENST00000570023 RGS22Q8NE09 1264 aa5.46□□□□□ -1.54
VPS39-212ENST00000570023 ANKRD24Q8TF21 1146 aa5.46□□□□□ -1.54
VPS39-212ENST00000570023 USP26Q9BXU7 913 aa5.46□□□□□ -1.54
VPS39-212ENST00000570023 SEMA6BQ9H3T3 888 aa5.46□□□□□ -1.54
VPS39-212ENST00000570023 SPG7Q9UQ90 795 aa5.46□□□□□ -1.54
VPS39-212ENST00000570023 TIAF1O95411 115 aa5.45□□□□□ -1.54
VPS39-212ENST00000570023 MAOBP27338 520 aa5.45□□□□□ -1.54
VPS39-212ENST00000570023 TNNT2P45379 298 aaPredicted RBP5.45□□□□□ -1.54
VPS39-212ENST00000570023 IRX3P78415 501 aaPredicted RBP5.45□□□□□ -1.54
VPS39-212ENST00000570023 POU4F3Q15319 338 aa5.45□□□□□ -1.54
VPS39-212ENST00000570023 CCDC27Q2M243 656 aa5.45□□□□□ -1.54
VPS39-212ENST00000570023 EAPPQ56P03 285 aaPredicted RBP5.45□□□□□ -1.54
VPS39-212ENST00000570023 PRR23CQ6ZRP0 262 aa5.45□□□□□ -1.54
VPS39-212ENST00000570023 CNPY4Q8N129 248 aa5.45□□□□□ -1.54
VPS39-212ENST00000570023 ARMC10Q8N2F6 343 aa5.45□□□□□ -1.54
VPS39-212ENST00000570023 PNNQ9H307 717 aaKnown RBP5.45□□□□□ -1.54
VPS39-212ENST00000570023 PPM1HQ9ULR3 514 aa5.45□□□□□ -1.54
VPS39-212ENST00000570023 LAS1LQ9Y4W2 734 aaKnown RBP5.45□□□□□ -1.54
VPS39-212ENST00000570023 SYNGAP1Q96PV0 1343 aa5.45□□□□□ -1.54
VPS39-212ENST00000570023 GNA15P30679 374 aa5.44□□□□□ -1.54
VPS39-212ENST00000570023 FAM193AP78312 1265 aa5.44□□□□□ -1.54
VPS39-212ENST00000570023 NUTM2GQ5VZR2 741 aa5.44□□□□□ -1.54
VPS39-212ENST00000570023 SLC51AQ86UW1 340 aa5.44□□□□□ -1.54
VPS39-212ENST00000570023 MYRFLQ96LU7 910 aa5.44□□□□□ -1.54
VPS39-212ENST00000570023 C12orf49Q9H741 205 aa5.44□□□□□ -1.54
VPS39-212ENST00000570023 CYP4F12Q9HCS2 524 aa5.44□□□□□ -1.54
VPS39-212ENST00000570023 TMEM39AQ9NV64 488 aa5.44□□□□□ -1.54
VPS39-212ENST00000570023 TMEM51Q9NW97 253 aa5.44□□□□□ -1.54
VPS39-212ENST00000570023 DHX15O43143 795 aaKnown RBP5.43□□□□□ -1.54
VPS39-212ENST00000570023 KIF20AO95235 890 aa5.43□□□□□ -1.54
VPS39-212ENST00000570023 CTSBP07858 339 aa5.43□□□□□ -1.54
VPS39-212ENST00000570023 PREPP48147 710 aa5.43□□□□□ -1.54
VPS39-212ENST00000570023 TERF1P54274 439 aa5.43□□□□□ -1.54
VPS39-212ENST00000570023 PPP2R3AQ06190 1150 aa5.43□□□□□ -1.54
VPS39-212ENST00000570023 SLC20A2Q08357 652 aa5.43□□□□□ -1.54
VPS39-212ENST00000570023 HP1BP3Q5SSJ5 553 aaPredicted RBP5.43□□□□□ -1.54
VPS39-212ENST00000570023 FDX2Q6P4F2 183 aa5.43□□□□□ -1.54
VPS39-212ENST00000570023 PPP1R3FQ6ZSY5 799 aaPredicted RBP5.43□□□□□ -1.54
VPS39-212ENST00000570023 FBXO33Q7Z6M2 555 aa5.43□□□□□ -1.54
VPS39-212ENST00000570023 PSMD1Q99460 953 aa5.43□□□□□ -1.54
VPS39-212ENST00000570023 CORO1BQ9BR76 489 aa5.43□□□□□ -1.54
VPS39-212ENST00000570023 FAM8A1Q9UBU6 413 aa5.43□□□□□ -1.54
VPS39-212ENST00000570023 AKAP2Q9Y2D5 859 aa5.43□□□□□ -1.54
VPS39-212ENST00000570023 AK5Q9Y6K8 562 aa5.43□□□□□ -1.54
VPS39-212ENST00000570023 ZBTB7CA1YPR0 619 aa5.42□□□□□ -1.54
VPS39-212ENST00000570023 GOLGA6L3A6NEY3 463 aa5.42□□□□□ -1.54
VPS39-212ENST00000570023 ECEL1O95672 775 aa5.42□□□□□ -1.54
VPS39-212ENST00000570023 IRX6P78412 446 aaPredicted RBP5.42□□□□□ -1.54
VPS39-212ENST00000570023 PRSS36Q5K4E3 855 aa5.42□□□□□ -1.54
VPS39-212ENST00000570023 PDZD3Q86UT5 571 aa5.42□□□□□ -1.54
VPS39-212ENST00000570023 FAM20CQ8IXL6 584 aa5.42□□□□□ -1.54
VPS39-212ENST00000570023 UTP4Q969X6 686 aaKnown RBP5.42□□□□□ -1.54
VPS39-212ENST00000570023 NECAB3Q96P71 396 aaPredicted RBP5.42□□□□□ -1.54
VPS39-212ENST00000570023 DUSP9Q99956 384 aaKnown RBP5.42□□□□□ -1.54
VPS39-212ENST00000570023 CEP44Q9C0F1 390 aa5.42□□□□□ -1.54
VPS39-212ENST00000570023 HIF3AQ9Y2N7 669 aa5.42□□□□□ -1.54
VPS39-212ENST00000570023 RAXQ9Y2V3 346 aa5.42□□□□□ -1.54
VPS39-212ENST00000570023 SART1O43290 800 aaKnown RBP5.41□□□□□ -1.54
VPS39-212ENST00000570023 ZNF157P51786 506 aaPredicted RBP5.41□□□□□ -1.54
VPS39-212ENST00000570023 SOX4Q06945 474 aaPredicted RBP5.41□□□□□ -1.54
VPS39-212ENST00000570023 CLEC10AQ8IUN9 316 aa5.41□□□□□ -1.54
VPS39-212ENST00000570023 C12orf50Q8NA57 414 aaPredicted RBP5.41□□□□□ -1.54
VPS39-212ENST00000570023 C2CD4AQ8NCU7 369 aaPredicted RBP5.41□□□□□ -1.54
VPS39-212ENST00000570023 ZNF830Q96NB3 372 aaPredicted RBP5.41□□□□□ -1.54
VPS39-212ENST00000570023 KRT82Q9NSB4 513 aa5.41□□□□□ -1.54
VPS39-212ENST00000570023 ENC1O14682 589 aa5.4□□□□□ -1.54
VPS39-212ENST00000570023 IGSF3O75054 1194 aa5.4□□□□□ -1.54
VPS39-212ENST00000570023 AOC2O75106 756 aa5.4□□□□□ -1.54
VPS39-212ENST00000570023 GSTP1P09211 210 aaKnown RBP5.4□□□□□ -1.54
VPS39-212ENST00000570023 USP17L7P0C7H9 530 aa5.4□□□□□ -1.54
VPS39-212ENST00000570023 BMP3P12645 472 aa5.4□□□□□ -1.54
VPS39-212ENST00000570023 DRD2P14416 443 aa5.4□□□□□ -1.54
VPS39-212ENST00000570023 NME2P22392 152 aa5.4□□□□□ -1.54
VPS39-212ENST00000570023 EIF4BP23588 611 aaKnown RBP5.4□□□□□ -1.54
VPS39-212ENST00000570023 ARNTP27540 789 aa5.4□□□□□ -1.54
VPS39-212ENST00000570023 L1TD1Q5T7N2 865 aaKnown RBP5.4□□□□□ -1.54
VPS39-212ENST00000570023 FAM83CQ9BQN1 747 aa5.4□□□□□ -1.54
VPS39-212ENST00000570023 GTPBP4Q9BZE4 634 aaKnown RBP5.4□□□□□ -1.54
VPS39-212ENST00000570023 GSX1Q9H4S2 264 aaPredicted RBP5.4□□□□□ -1.54
VPS39-212ENST00000570023 CCDC86Q9H6F5 360 aaKnown RBP5.4□□□□□ -1.54
VPS39-212ENST00000570023 RNF19AQ9NV58 838 aa5.4□□□□□ -1.54
VPS39-212ENST00000570023 CACNA2D2Q9NY47 1150 aa5.4□□□□□ -1.54
VPS39-212ENST00000570023 STOML1Q9UBI4 398 aa5.4□□□□□ -1.54
VPS39-212ENST00000570023 PARP2Q9UGN5 583 aa5.4□□□□□ -1.54
VPS39-212ENST00000570023 GPN3Q9UHW5 284 aaPredicted RBP5.4□□□□□ -1.54
VPS39-212ENST00000570023 GSC2O15499 205 aa5.39□□□□□ -1.55
VPS39-212ENST00000570023 ADH5P11766 374 aa5.39□□□□□ -1.55
VPS39-212ENST00000570023 FSTP19883 344 aa5.39□□□□□ -1.55
VPS39-212ENST00000570023 BMP6P22004 513 aa5.39□□□□□ -1.55
VPS39-212ENST00000570023 DAB2P98082 770 aa5.39□□□□□ -1.55
VPS39-212ENST00000570023 DMTNQ08495 405 aa5.39□□□□□ -1.55
VPS39-212ENST00000570023 ZNF252P-AS1Q0IIN9 211 aa5.39□□□□□ -1.55
VPS39-212ENST00000570023 SULF2Q8IWU5 870 aa5.39□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms