RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 FBF1Q8TES7 1133 aa7.48□□□□□ -1.21
VPS35-205ENST00000563984 SUGCTQ9HAC7 445 aa7.48□□□□□ -1.21
VPS35-205ENST00000563984 CYP4F12Q9HCS2 524 aa7.48□□□□□ -1.21
VPS35-205ENST00000563984 XRCC5P13010 732 aaKnown RBP7.47□□□□□ -1.21
VPS35-205ENST00000563984 MAPK8P45983 427 aa7.47□□□□□ -1.21
VPS35-205ENST00000563984 COL19A1Q14993 1142 aa7.47□□□□□ -1.21
VPS35-205ENST00000563984 HP1BP3Q5SSJ5 553 aaPredicted RBP7.47□□□□□ -1.21
VPS35-205ENST00000563984 FAM20CQ8IXL6 584 aa7.47□□□□□ -1.21
VPS35-205ENST00000563984 SMG8Q8ND04 991 aaKnown RBP7.47□□□□□ -1.21
VPS35-205ENST00000563984 FAM83CQ9BQN1 747 aa7.47□□□□□ -1.21
VPS35-205ENST00000563984 CHMP4AQ9BY43 222 aa7.47□□□□□ -1.21
VPS35-205ENST00000563984 GAS2O43903 313 aaKnown RBP7.46□□□□□ -1.22
VPS35-205ENST00000563984 POU4F3Q15319 338 aa7.46□□□□□ -1.22
VPS35-205ENST00000563984 LARP7Q4G0J3 582 aaKnown RBP eCLIP7.46□□□□□ -1.22
VPS35-205ENST00000563984 ALG1LQ6GMV1 187 aa7.46□□□□□ -1.22
VPS35-205ENST00000563984 PPP1R3FQ6ZSY5 799 aaPredicted RBP7.46□□□□□ -1.22
VPS35-205ENST00000563984 BEND4Q6ZU67 534 aa7.46□□□□□ -1.22
VPS35-205ENST00000563984 CLEC10AQ8IUN9 316 aa7.46□□□□□ -1.22
VPS35-205ENST00000563984 PKNOX2Q96KN3 472 aa7.46□□□□□ -1.22
VPS35-205ENST00000563984 BCO2Q9BYV7 579 aa7.46□□□□□ -1.22
VPS35-205ENST00000563984 HIF3AQ9Y2N7 669 aa7.46□□□□□ -1.22
VPS35-205ENST00000563984 DLGAP3O95886 979 aa7.45□□□□□ -1.22
VPS35-205ENST00000563984 SGO2Q562F6 1265 aa7.45□□□□□ -1.22
VPS35-205ENST00000563984 PI16Q6UXB8 463 aa7.45□□□□□ -1.22
VPS35-205ENST00000563984 DTHD1Q6ZMT9 781 aa7.45□□□□□ -1.22
VPS35-205ENST00000563984 SND1Q7KZF4 910 aaKnown RBP eCLIP7.45□□□□□ -1.22
VPS35-205ENST00000563984 SRCIN1Q9C0H9 1055 aa7.45□□□□□ -1.22
VPS35-205ENST00000563984 WDR64B1ANS9 1081 aa7.44□□□□□ -1.22
VPS35-205ENST00000563984 TIAF1O95411 115 aa7.44□□□□□ -1.22
VPS35-205ENST00000563984 DRD2P14416 443 aa7.44□□□□□ -1.22
VPS35-205ENST00000563984 JUNBP17275 347 aaPredicted RBP7.44□□□□□ -1.22
VPS35-205ENST00000563984 MAOBP27338 520 aa7.44□□□□□ -1.22
VPS35-205ENST00000563984 RXRBP28702 533 aa7.44□□□□□ -1.22
VPS35-205ENST00000563984 FCGRTP55899 365 aa7.44□□□□□ -1.22
VPS35-205ENST00000563984 ATP2B2Q01814 1243 aa7.44□□□□□ -1.22
VPS35-205ENST00000563984 AP3B2Q13367 1082 aa7.44□□□□□ -1.22
VPS35-205ENST00000563984 C12orf50Q8NA57 414 aaPredicted RBP7.44□□□□□ -1.22
VPS35-205ENST00000563984 CORO1BQ9BR76 489 aa7.44□□□□□ -1.22
VPS35-205ENST00000563984 TRIM56Q9BRZ2 755 aaKnown RBP7.44□□□□□ -1.22
VPS35-205ENST00000563984 CCDC39Q9UFE4 941 aa7.44□□□□□ -1.22
VPS35-205ENST00000563984 SHROOM4Q9ULL8 1493 aa7.43□□□□□ -1.22
VPS35-205ENST00000563984 DBX1A6NMT0 343 aa7.43□□□□□ -1.22
VPS35-205ENST00000563984 GIPC1O14908 333 aa7.43□□□□□ -1.22
VPS35-205ENST00000563984 HSP90B1P14625 803 aaKnown RBP7.43□□□□□ -1.22
VPS35-205ENST00000563984 ZNF124Q15973 351 aa7.43□□□□□ -1.22
VPS35-205ENST00000563984 MSMPQ1L6U9 139 aa7.43□□□□□ -1.22
VPS35-205ENST00000563984 ZNF648Q5T619 568 aaPredicted RBP7.43□□□□□ -1.22
VPS35-205ENST00000563984 NXPE4Q6UWF7 544 aa7.43□□□□□ -1.22
VPS35-205ENST00000563984 MFSD14AQ96MC6 490 aa7.43□□□□□ -1.22
VPS35-205ENST00000563984 PIM2Q9P1W9 311 aa7.43□□□□□ -1.22
VPS35-205ENST00000563984 ANGEL1Q9UNK9 670 aaKnown RBP7.43□□□□□ -1.22
VPS35-205ENST00000563984 MAP4P27816 1152 aaKnown RBP7.42□□□□□ -1.22
VPS35-205ENST00000563984 PPP2R3AQ06190 1150 aa7.42□□□□□ -1.22
VPS35-205ENST00000563984 FAAP100Q0VG06 881 aa7.42□□□□□ -1.22
VPS35-205ENST00000563984 KRTAP5-3Q6L8H2 238 aa7.42□□□□□ -1.22
VPS35-205ENST00000563984 PRNPP04156 253 aa7.41□□□□□ -1.22
VPS35-205ENST00000563984 CTSBP07858 339 aa7.41□□□□□ -1.22
VPS35-205ENST00000563984 SOX4Q06945 474 aaPredicted RBP7.41□□□□□ -1.22
VPS35-205ENST00000563984 SHISA5Q8N114 240 aa7.41□□□□□ -1.22
VPS35-205ENST00000563984 FBXL6Q8N531 539 aa7.41□□□□□ -1.22
VPS35-205ENST00000563984 TMEM39AQ9NV64 488 aa7.41□□□□□ -1.22
VPS35-205ENST00000563984 P4HBP07237 508 aaKnown RBP7.4□□□□□ -1.22
VPS35-205ENST00000563984 GSTT1P30711 240 aa7.4□□□□□ -1.22
VPS35-205ENST00000563984 FGD1P98174 961 aa7.4□□□□□ -1.22
VPS35-205ENST00000563984 HNRNPUQ00839 825 aaKnown RBP eCLIP7.4□□□□□ -1.22
VPS35-205ENST00000563984 FRMD6Q96NE9 622 aa7.4□□□□□ -1.22
VPS35-205ENST00000563984 RAD18Q9NS91 495 aa7.4□□□□□ -1.22
VPS35-205ENST00000563984 WWC3Q9ULE0 1092 aa7.4□□□□□ -1.22
VPS35-205ENST00000563984 SPG7Q9UQ90 795 aa7.4□□□□□ -1.22
VPS35-205ENST00000563984 AKAP2Q9Y2D5 859 aa7.4□□□□□ -1.22
VPS35-205ENST00000563984 SYNGAP1Q96PV0 1343 aa7.4□□□□□ -1.22
VPS35-205ENST00000563984 ADH5P11766 374 aa7.39□□□□□ -1.23
VPS35-205ENST00000563984 USP11P51784 963 aa7.39□□□□□ -1.23
VPS35-205ENST00000563984 ZNF157P51786 506 aaPredicted RBP7.39□□□□□ -1.23
VPS35-205ENST00000563984 NFKBIBQ15653 356 aa7.39□□□□□ -1.23
VPS35-205ENST00000563984 CDPF1Q6NVV7 123 aa7.39□□□□□ -1.23
VPS35-205ENST00000563984 C2CD4AQ8NCU7 369 aaPredicted RBP7.39□□□□□ -1.23
VPS35-205ENST00000563984 FBLIM1Q8WUP2 373 aa7.39□□□□□ -1.23
VPS35-205ENST00000563984 FBXL18Q96ME1 805 aa7.39□□□□□ -1.23
VPS35-205ENST00000563984 OSBPL7Q9BZF2 842 aa7.39□□□□□ -1.23
VPS35-205ENST00000563984 GPN3Q9UHW5 284 aaPredicted RBP7.39□□□□□ -1.23
VPS35-205ENST00000563984 ECEL1O95672 775 aa7.38□□□□□ -1.23
VPS35-205ENST00000563984 LDHBP07195 334 aaKnown RBP7.38□□□□□ -1.23
VPS35-205ENST00000563984 PDE3AQ14432 1141 aa7.38□□□□□ -1.23
VPS35-205ENST00000563984 TP53INP2Q8IXH6 220 aa7.38□□□□□ -1.23
VPS35-205ENST00000563984 C3orf58Q8NDZ4 430 aa7.38□□□□□ -1.23
VPS35-205ENST00000563984 SETDB2Q96T68 719 aa7.38□□□□□ -1.23
VPS35-205ENST00000563984 YIPF2Q9BWQ6 316 aa7.38□□□□□ -1.23
VPS35-205ENST00000563984 PPM1HQ9ULR3 514 aa7.38□□□□□ -1.23
VPS35-205ENST00000563984 ANKRD33BA6NCL7 494 aa7.37□□□□□ -1.23
VPS35-205ENST00000563984 AOC2O75106 756 aa7.37□□□□□ -1.23
VPS35-205ENST00000563984 F13BP05160 661 aa7.37□□□□□ -1.23
VPS35-205ENST00000563984 ANKRD24Q8TF21 1146 aa7.37□□□□□ -1.23
VPS35-205ENST00000563984 KRT82Q9NSB4 513 aa7.37□□□□□ -1.23
VPS35-205ENST00000563984 PRPF40AO75400 957 aaKnown RBP7.36□□□□□ -1.23
VPS35-205ENST00000563984 GSTP1P09211 210 aaKnown RBP7.36□□□□□ -1.23
VPS35-205ENST00000563984 FOSL1P15407 271 aa7.36□□□□□ -1.23
VPS35-205ENST00000563984 AKAP4Q5JQC9 854 aa7.36□□□□□ -1.23
VPS35-205ENST00000563984 VSIG10LQ86VR7 867 aa7.36□□□□□ -1.23
VPS35-205ENST00000563984 EZH1Q92800 747 aaPredicted RBP7.36□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms